Spg025114 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAATCGTATGCGTCGGCGGCTGATTTCTCGCGATTCGATCACCACTACCAGCAACAACAGAGCAAGCCGAAGGCCTCACGAGTCGGCGATTTTTTTCCTGTCTATGTAGCGTTTGTAATCTTGGAATGGTAAGTTTTGGATTTGTTTTTTCCCATGCTTTTGTTTTTGTATGCTGATCACATTCTTGAATTTTACTTCCGAGTTAAAAATGGCGATTAGTTGATTAAGCAAAGTCAAAAAGTCTGTGTTAGGCAATTTAATTTCTTTTCTCCAGCCATGGGATTCAAAATTCCCATACTTTTTTTCGCCGTTCCATTGAGTGTTTGTTCGATTCTTGGTTTTAGTTTTATTCTGCCGTTGTTGTTGAAGCCATTATTGTGAGAACCATTATACCAGAACTGAAATGTTATTTTAAGAAAAATTTAGACAATCTCCTTTATTTTAATGTCAGATGCACTCAATATAGATCCATTTTTTTAATACATACACATCTTTTCACAAAATATTTACAATGGTTGATAAATTAAATTTAAAATTCATATAGACACATCCTTTCAAACCATACAACACATCCTCTCAGACACATCCTTTCACCCTTTAAATGCAAATCGTTTTGATTTTCTTGGACAAAAACTTTATTTTCAAAATGTCAAATGAGAAGATGATGGTTTCTTTCATAAGAGAGCTTAAAGCCTTTCAAAGGGAATGGAAGATAAAAGTTTTTGTTCTTCGTAAAGGGAATGTTGAATCATGTCAGAATGGCGCCTTGAAAATACAGAAATTTATTTTCATCGATGAAGAGGTAATTTTGATCTTCAAAAGTTAATATTTATCCATTGTTATTCAAATTTAGATTTGGAAATTCCTACCTATGCAAATCATGGATGATGATATTTCCTTCTCTATTTTAAATAATGTTTCAGTTTACATGTTTCTGTATTGCATTGTTTCCTAGATTATGATGACTTGACCTTTCCTGTAATCTTTAAATTTCATTAAAAATCTTAACTAATATTCCCGGTCAAATACAGGGGAATTAAAACTTAAATTTATTCAATTTTTCATGTGTTTACAGGGATCCAAAATTCAAGCAGTGATGTTCAACGAAGTTATAGAAACCATCGGAAATGGTATTTTAAGGAATAAATTTTATTTGATTGAAAATGGAAATGTGAAAAATGTGAATGGTAAATATGCAAATGTAAATGAAGAGATTGAAATGACCCTGTCTTCATCTACGACGATCGAAGAAATTGAAGAACCATTTCCTCTTCATAAATTGACGTATAATTTCATCCAAATTTCTGAGATGGAATCATTTGGGATGACAGGAAAAATGATAGGTAACTATTTTTCCAAAAAAAAAATTATAGTATATTTAGATATTATTCGATATATATATTTTTTTTTCATGTTAATTCTCTACCTACTTTGCAGATTTTATTGGAATTGTATTCTCTGTGAGATCTATGGTTGAAATAAAAATGAAAAATTCAAACAATAAAACATTGATGAAGAGAGAGATATTTTTGCTAGAACAAAGGTTAGTAATTGTTTCAATTTTTTTTCCTTTACAAAAATTATTTATTTCATGGTTGTTTTATGTTAAAAAGTGGTAATTTAATTTGTAGTGGCAAGCCATTTAGATTGACACTGTGGAATGATTTGGCAACCAATGAAGGTTTAGAATTAGAAGAACAAATTATTCACAATCCAATAATTTTAGCATTCAATCTGAAGGTGAACATGTATGAAGGTAAACTTTTTAAATCCAATATATAACACTAATATAAGGGGCAGGAGGATTCTTAATTTAACTTTTATTTTTTCTTATGTTAGGAGAATTAAGCATGGCAACAACAATGACGAGCAACATCTTAATTGAACCAGATTTTGTAGATTCAAAAGATCTAAAAGAACGGTATTTATCCATATATCTCTAAATTCGAAATTTGCATTTACTATTAAATTAACCTCTACAGGTATTTGTTCATATATCTCTAAATTTGAAATCTGCATTTACTATTTAAATTAACCTCTACCTTTATTTAAATTAACCTCTACATTTATACTATTCTTGTAGGAGGGAACTTCTTTTGGATCACACATACATGTCTACTTTTATTCCTCCCTCTAAAAAAATGGAAAGAGCAAAATTAGTAAGCATCAAAGATATTATTCATGGGTTAGTTGATGATTTATATTGTTGTATCATTGGCTCAATTGTCGAGATAGTTAACAAAGACAATCCATGGTTTGAGAAATGCAAACTTTGCAACCAGAGAGTGTATCCCAATGGAAGTCAGAAAATGACTCACTGTAACAATTGCAACGACCTTGTCCAATTCATTAGAAAATATATGCTAAAGCTTAAAATTTGTGATGGCCAAATGACTGCACATATAACTGCTTTTGAAGCTGCAGAAGTCATAGTTGGAAGTAGTGTTTCCCATTATGCAACCCAAATTTTACAGGTAATCATATAAAATAGAAATTTATTTCTTAAATAAATCCCCTCTAAATTTTTATCTAACATTTTATATTTGTTCATTTGTTGACTACAATCTCAGATGAAAAAGAAGGAGGATTCCAAAATTTATCGCAATTTCATCCTCGCACAAGGAAAAACTTACAAATTCCTCGTTCGCATGGACAAGAAGTTTGAAGGAGATCGATCAAAGGGACATTTTGTGGTTCAAGAGATAAATAAAGTAGAGGTTGAAGAATCTGACTTAGAAACTCTTGAAGTTTTACATGTTAAGAAAAAAATTAAAATAGAAAGATAGTTTCAATTTTTTTTTTTTTATATTTTTCACATTTGTTTTGTTAATTTAAACGATCCACATGTAATGTTAACTATCATATTTCAACTTTGGTATTTTTAATTTTTCATTAGTTTCCTTATTTTAGTGGCATAATCATAAATGATGTTTAGTGGGAATAAAATGACCAATTATATTGTAATGAGTTTTT ATGAAATCGTATGCGTCGGCGGCTGATTTCTCGCGATTCGATCACCACTACCAGCAACAACAGAGCAAGCCGAAGGCCTCACGAGTCGGCGATTTTTTTCCTGTCTATGTAGCGTTTGTAATCTTGGAATGTGGCAAGCCATTTAGATTGACACTGTGGAATGATTTGGCAACCAATGAAGGTTTAGAATTAGAAGAACAAATTATTCACAATCCAATAATTTTAGCATTCAATCTGAAGGTGAACATGTATGAAGGAGAATTAAGCATGGCAACAACAATGACGAGCAACATCTTAATTGAACCAGATTTTGTAGATTCAAAAGATCTAAAAGAACGGAGGGAACTTCTTTTGGATCACACATACATGTCTACTTTTATTCCTCCCTCTAAAAAAATGGAAAGAGCAAAATTAGTAAGCATCAAAGATATTATTCATGGGTTAGTTGATGATTTATATTGTTGTATCATTGGCTCAATTGTCGAGATAGTTAACAAAGACAATCCATGGTTTGAGAAATGCAAACTTTGCAACCAGAGAGTGTATCCCAATGGAAGTCAGAAAATGACTCACTGTAACAATTGCAACGACCTTGTCCAATTCATTAGAAAATATATGCTAAAGCTTAAAATTTGTGATGGCCAAATGACTGCACATATAACTGCTTTTGAAGCTGCAGAAGTCATAGTTGGAAGTAGTGTTTCCCATTATGCAACCCAAATTTTACAGATGAAAAAGAAGGAGGATTCCAAAATTTATCGCAATTTCATCCTCGCACAAGGAAAAACTTACAAATTCCTCGTTCGCATGGACAAGAAGTTTGAAGGAGATCGATCAAAGGGACATTTTGTGGTTCAAGAGATAAATAAAGTAGAGGTTGAAGAATCTGACTTAGAAACTCTTGAAGTTTTACATGTTAAGAAAAAAATTAAAATAGAAAGATAG ATGAAATCGTATGCGTCGGCGGCTGATTTCTCGCGATTCGATCACCACTACCAGCAACAACAGAGCAAGCCGAAGGCCTCACGAGTCGGCGATTTTTTTCCTGTCTATGTAGCGTTTGTAATCTTGGAATGTGGCAAGCCATTTAGATTGACACTGTGGAATGATTTGGCAACCAATGAAGGTTTAGAATTAGAAGAACAAATTATTCACAATCCAATAATTTTAGCATTCAATCTGAAGGTGAACATGTATGAAGGAGAATTAAGCATGGCAACAACAATGACGAGCAACATCTTAATTGAACCAGATTTTGTAGATTCAAAAGATCTAAAAGAACGGAGGGAACTTCTTTTGGATCACACATACATGTCTACTTTTATTCCTCCCTCTAAAAAAATGGAAAGAGCAAAATTAGTAAGCATCAAAGATATTATTCATGGGTTAGTTGATGATTTATATTGTTGTATCATTGGCTCAATTGTCGAGATAGTTAACAAAGACAATCCATGGTTTGAGAAATGCAAACTTTGCAACCAGAGAGTGTATCCCAATGGAAGTCAGAAAATGACTCACTGTAACAATTGCAACGACCTTGTCCAATTCATTAGAAAATATATGCTAAAGCTTAAAATTTGTGATGGCCAAATGACTGCACATATAACTGCTTTTGAAGCTGCAGAAGTCATAGTTGGAAGTAGTGTTTCCCATTATGCAACCCAAATTTTACAGATGAAAAAGAAGGAGGATTCCAAAATTTATCGCAATTTCATCCTCGCACAAGGAAAAACTTACAAATTCCTCGTTCGCATGGACAAGAAGTTTGAAGGAGATCGATCAAAGGGACATTTTGTGGTTCAAGAGATAAATAAAGTAGAGGTTGAAGAATCTGACTTAGAAACTCTTGAAGTTTTACATGTTAAGAAAAAAATTAAAATAGAAAGATAG MKSYASAADFSRFDHHYQQQQSKPKASRVGDFFPVYVAFVILECGKPFRLTLWNDLATNEGLELEEQIIHNPIILAFNLKVNMYEGELSMATTMTSNILIEPDFVDSKDLKERRELLLDHTYMSTFIPPSKKMERAKLVSIKDIIHGLVDDLYCCIIGSIVEIVNKDNPWFEKCKLCNQRVYPNGSQKMTHCNNCNDLVQFIRKYMLKLKICDGQMTAHITAFEAAEVIVGSSVSHYATQILQMKKKEDSKIYRNFILAQGKTYKFLVRMDKKFEGDRSKGHFVVQEINKVEVEESDLETLEVLHVKKKIKIER Homology
BLAST of Spg025114 vs. NCBI nr
Match: XP_020253860.1 (replication protein A 70 kDa DNA-binding subunit B-like [Asparagus officinalis]) HSP 1 Score: 141.0 bits (354), Expect = 1.8e-29 Identity = 88/277 (31.77%), Postives = 157/277 (56.68%), Query Frame = 0
BLAST of Spg025114 vs. NCBI nr
Match: KAG5560633.1 (hypothetical protein RHGRI_003829 [Rhododendron griersonianum]) HSP 1 Score: 138.3 bits (347), Expect = 1.2e-28 Identity = 96/303 (31.68%), Postives = 152/303 (50.17%), Query Frame = 0
BLAST of Spg025114 vs. NCBI nr
Match: KAG5574299.1 (hypothetical protein H5410_054433 [Solanum commersonii]) HSP 1 Score: 136.7 bits (343), Expect = 3.4e-28 Identity = 88/269 (32.71%), Postives = 146/269 (54.28%), Query Frame = 0
BLAST of Spg025114 vs. NCBI nr
Match: XP_016485940.1 (PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana tabacum]) HSP 1 Score: 136.3 bits (342), Expect = 4.4e-28 Identity = 82/247 (33.20%), Postives = 134/247 (54.25%), Query Frame = 0
BLAST of Spg025114 vs. NCBI nr
Match: KAG5563556.1 (hypothetical protein RHGRI_006105 [Rhododendron griersonianum]) HSP 1 Score: 136.0 bits (341), Expect = 5.8e-28 Identity = 95/303 (31.35%), Postives = 150/303 (49.50%), Query Frame = 0
BLAST of Spg025114 vs. ExPASy Swiss-Prot
Match: Q9FME0 (Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana OX=3702 GN=RPA1D PE=2 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 1.3e-09 Identity = 56/221 (25.34%), Postives = 106/221 (47.96%), Query Frame = 0
BLAST of Spg025114 vs. ExPASy Swiss-Prot
Match: Q10Q08 (Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1B PE=1 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 2.8e-09 Identity = 60/225 (26.67%), Postives = 107/225 (47.56%), Query Frame = 0
BLAST of Spg025114 vs. ExPASy Swiss-Prot
Match: Q9SD82 (Replication protein A 70 kDa DNA-binding subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA1B PE=3 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 5.3e-08 Identity = 51/202 (25.25%), Postives = 90/202 (44.55%), Query Frame = 0
BLAST of Spg025114 vs. ExPASy TrEMBL
Match: A0A1S4BAI4 (replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=4097 GN=LOC107806315 PE=4 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 2.1e-28 Identity = 82/247 (33.20%), Postives = 134/247 (54.25%), Query Frame = 0
BLAST of Spg025114 vs. ExPASy TrEMBL
Match: M1DXI7 (Replication protein A1 OS=Solanum tuberosum OX=4113 PE=4 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 2.8e-28 Identity = 86/271 (31.73%), Postives = 147/271 (54.24%), Query Frame = 0
BLAST of Spg025114 vs. ExPASy TrEMBL
Match: A0A1J6KWZ0 (Rep_fac-A_C domain-containing protein OS=Nicotiana attenuata OX=49451 GN=A4A49_29609 PE=4 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 4.0e-27 Identity = 83/276 (30.07%), Postives = 144/276 (52.17%), Query Frame = 0
BLAST of Spg025114 vs. ExPASy TrEMBL
Match: M1DP79 (Replication factor A OS=Solanum tuberosum OX=4113 PE=4 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 6.9e-27 Identity = 89/291 (30.58%), Postives = 150/291 (51.55%), Query Frame = 0
BLAST of Spg025114 vs. ExPASy TrEMBL
Match: A0A1S4BU38 (replication protein A 70 kDa DNA-binding subunit B-like OS=Nicotiana tabacum OX=4097 GN=LOC107811908 PE=4 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 4.4e-26 Identity = 81/272 (29.78%), Postives = 141/272 (51.84%), Query Frame = 0
BLAST of Spg025114 vs. TAIR 10
Match: AT5G61000.1 (Replication factor-A protein 1-related ) HSP 1 Score: 65.5 bits (158), Expect = 8.9e-11 Identity = 56/221 (25.34%), Postives = 106/221 (47.96%), Query Frame = 0
BLAST of Spg025114 vs. TAIR 10
Match: AT5G08020.1 (RPA70-kDa subunit B ) HSP 1 Score: 60.1 bits (144), Expect = 3.7e-09 Identity = 51/202 (25.25%), Postives = 90/202 (44.55%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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