Spg023955 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg023955
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	U6 snRNA-associated Sm-like protein LSm1
Location	scaffold13: 671052 .. 671943 (+)
RNA-Seq Expression	Spg023955
Synteny	Spg023955

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAGATCAACTTAGAATTAGGCCTCAAACGAAACGAAAGCTTCCAATTTTCTTCAGTTTCAATGTCTTGGGGCTCTTGGTTACGACCCGAACACATCTTCCTCACTACTTCTCTCGGCGCTTATCTCGACCGTACAACACATCAACATCCTCTTCTCTTCTTCCAACTCTTCTTCTTCCAATTATACTCATTGTTAATCTCTTTCTGCTTCAGGCAAAATACTGCTGACGCTTCTTGATGGACGTGATTTCATCGGCATCATGCGTTCCTTCGACCACCACGGTATCGCTATCTATCTATCTATCTATCTATCTATAGGATACAATCTTTGTATTAACCAATCACTCTATCAGGTAACATTGTTCTTCAGGATGCATTTGAAAGAATTATTGTTGGCAATCTCTATTGCGATAACCGCAAGGGACTCGTCTTGACTCGAGCCGAGAATGCGATTCTAGTTGGAGAGATGGTAATATATAACAACAATCTCATTTCTTTCTCTTTTTCATTCGAATCTTAGTTTTTCTTTCACTTGTATCATTATTCAGGACTCCAGATTCCCAGAACTTCCTCCTGATATGACTAGCGTCTCACTGCCTGAGATTTTAACTGTAGGTAAACTAAACTAAACTACTTCCCTTTTAAATGGGGCTTTGAGGGAGCCCAATCTTGTAAAGAATCATGTCCAATTGTCCATGCAGGCTCAGAAAGCAGAAATGGACTCATCAAGGCTTAAAAGAAGCTTCAAGAAATGGATGGAGGACTTCCTTGACGATTTTTGAAATGTATCTTCAGTCCACTAGTGATTTTCTGTTTTTTGTTTGGATAGTTGAAAACAATTTGTTAGTTCCCTGTTTGCTAGTTATATTCTATTGTCAATGAATGGAAAA

mRNA sequence

ATGTCTTGGGGCTCTTGGTTACGACCCGAACACATCTTCCTCACTACTTCTCTCGGCGCTTATCTCGACCGCAAAATACTGCTGACGCTTCTTGATGGACGTGATTTCATCGGCATCATGCGTTCCTTCGACCACCACGGTAACATTGTTCTTCAGGATGCATTTGAAAGAATTATTGTTGGCAATCTCTATTGCGATAACCGCAAGGGACTCGTCTTGACTCGAGCCGAGAATGCGATTCTAGTTGGAGAGATGGACTCCAGATTCCCAGAACTTCCTCCTGATATGACTAGCGTCTCACTGCCTGAGATTTTAACTGCTCAGAAAGCAGAAATGGACTCATCAAGGCTTAAAAGAAGCTTCAAGAAATGGATGGAGGACTTCCTTGACGATTTTTGA

Coding sequence (CDS)

ATGTCTTGGGGCTCTTGGTTACGACCCGAACACATCTTCCTCACTACTTCTCTCGGCGCTTATCTCGACCGCAAAATACTGCTGACGCTTCTTGATGGACGTGATTTCATCGGCATCATGCGTTCCTTCGACCACCACGGTAACATTGTTCTTCAGGATGCATTTGAAAGAATTATTGTTGGCAATCTCTATTGCGATAACCGCAAGGGACTCGTCTTGACTCGAGCCGAGAATGCGATTCTAGTTGGAGAGATGGACTCCAGATTCCCAGAACTTCCTCCTGATATGACTAGCGTCTCACTGCCTGAGATTTTAACTGCTCAGAAAGCAGAAATGGACTCATCAAGGCTTAAAAGAAGCTTCAAGAAATGGATGGAGGACTTCCTTGACGATTTTTGA

Protein sequence

MSWGSWLRPEHIFLTTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDNRKGLVLTRAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEMDSSRLKRSFKKWMEDFLDDF

Homology

[Close]

BLAST of Spg023955 vs. NCBI nr
Match: XP_023527037.1 (sm-like protein LSM1B isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.4 bits (407), Expect = 5.4e-36
Identity = 74/122 (60.66%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 9   PEHIFLTTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDNR 68
           PE+IF T  +G+YLDRK+L+ LLDGR  IG M +FD HGN V++ AFERI+  N YCD  
Sbjct: 7   PEYIFRTPCIGSYLDRKLLILLLDGRCIIGTMCTFDQHGNFVVESAFERIVAENQYCDKP 66

Query: 69  KGLVLTRAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEMDSSRLKRSFKKWMEDF 128
            GL++ R +NAI +GEMD  FPELPP +T+VSLP+IL A+KAE++SS LKR+ KKWME+ 
Sbjct: 67  MGLLVVRGDNAIFIGEMDLSFPELPPHITAVSLPQILIARKAELESSALKRTLKKWMEEL 126

Query: 129 LD 131
           LD
Sbjct: 127 LD 128

[Close]

BLAST of Spg023955 vs. NCBI nr
Match: XP_022955856.1 (sm-like protein LSM1B [Cucurbita moschata])

HSP 1 Score: 156.4 bits (394), Expect = 1.7e-34
Identity = 72/121 (59.50%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 10  EHIFLTTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDNRK 69
           E+IF T  +G+YLDRK+L+ LLDGR  IG M +FD HGN V++ AFERI+  N YCD   
Sbjct: 7   EYIFGTPCIGSYLDRKLLILLLDGRCIIGTMCAFDQHGNFVVESAFERIVAENQYCDKPM 66

Query: 70  GLVLTRAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEMDSSRLKRSFKKWMEDFL 129
           GL++ R +NA+ +GEMD  FPELPP +T+VSLP+IL A+KAE++SS LKR+ KKWME+ L
Sbjct: 67  GLLVVRGDNAMFIGEMDLSFPELPPHITAVSLPQILIARKAELESSALKRTLKKWMEELL 126

Query: 130 D 131
           D
Sbjct: 127 D 127

[Close]

BLAST of Spg023955 vs. NCBI nr
Match: XP_022980750.1 (sm-like protein LSM1B [Cucurbita maxima])

HSP 1 Score: 151.4 bits (381), Expect = 5.6e-33
Identity = 70/121 (57.85%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 10  EHIFLTTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDNRK 69
           E+IF T  +G+YLDRK+L+ LLDGR  IG M +FD +GN+V++ AFERI   N YCD   
Sbjct: 22  EYIFRTPCIGSYLDRKLLILLLDGRCIIGTMCTFDQYGNVVVESAFERIFAENQYCDKPM 81

Query: 70  GLVLTRAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEMDSSRLKRSFKKWMEDFL 129
           GL++ R +NAI +GEMD  FPELPP +T+VSLP+IL A+KAE+ SS  KR+ KKWME+  
Sbjct: 82  GLLVVRGDNAIFIGEMDLSFPELPPHITAVSLPQILIARKAELQSSVFKRTLKKWMEELF 141

Query: 130 D 131
           D
Sbjct: 142 D 142

[Close]

BLAST of Spg023955 vs. NCBI nr
Match: XP_039018543.1 (sm-like protein LSM1B [Hibiscus syriacus] >KAE8687572.1 U6 snRNA-associated Sm-like protein LSm1 [Hibiscus syriacus])

HSP 1 Score: 142.5 bits (358), Expect = 2.6e-30
Identity = 71/126 (56.35%), Postives = 91/126 (72.22%), Query Frame = 0


Query: 5   SWLRPEHIFLTTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLY 64
           SW  P+ IFL+TSL  YLD+K+++ L DGR  +G++RSFD   N+VL+ A ER+IVGNLY
Sbjct: 2   SWAGPDDIFLSTSLATYLDKKLIVLLRDGRKLLGLLRSFDQFANVVLEGACERVIVGNLY 61

Query: 65  CDNRKGLVLTRAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEMDSSRLKRSFKKW 124
           CD   GL + R EN +L+GEMDS   ELPP MT+VS  EI  AQKAE +++ LK S +K 
Sbjct: 62  CDIPLGLYVIRGENVVLIGEMDSEKEELPPHMTAVSAAEIKRAQKAEREATDLKGSMRKR 121

Query: 125 MEDFLD 131
           ME FLD
Sbjct: 122 ME-FLD 126

[Close]

BLAST of Spg023955 vs. NCBI nr
Match: KAF8388708.1 (hypothetical protein HHK36_025388 [Tetracentron sinense])

HSP 1 Score: 142.5 bits (358), Expect = 2.6e-30
Identity = 73/126 (57.94%), Postives = 91/126 (72.22%), Query Frame = 0


Query: 5   SWLRPEHIFLTTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLY 64
           SW  PE IFL+TSL +YLD+K+LL L DGR  +GI+RSFD + N VL+ A ER+IVG+LY
Sbjct: 2   SWAGPEDIFLSTSLASYLDKKLLLLLRDGRKLLGILRSFDQYANAVLEGACERVIVGDLY 61

Query: 65  CDNRKGLVLTRAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEMDSSRLKRSFKKW 124
           CD   GL + R EN +L+GE+D    ELPP MT VS  EI +AQKAE D++ LK S +K 
Sbjct: 62  CDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSAAEIKSAQKAERDATDLKGSMRKR 121

Query: 125 MEDFLD 131
           ME FLD
Sbjct: 122 ME-FLD 126

[Close]

BLAST of Spg023955 vs. ExPASy Swiss-Prot
Match: Q945P8 (Sm-like protein LSM1A OS=Arabidopsis thaliana OX=3702 GN=LSM1A PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.0e-29
Identity = 65/126 (51.59%), Postives = 85/126 (67.46%), Query Frame = 0


Query: 5   SWLRPEHIFLTTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLY 64
           SW  P+ IF +TSL AYLD+K+L+ L DGR  +G++RSFD   N VL++A+ER+IVG+LY
Sbjct: 2   SWAAPDDIFFSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLY 61

Query: 65  CDNRKGLVLTRAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEMDSSRLKRSFKKW 124
           CD   GL + R EN +L+GE+D    ELP  M  V   EI  AQKAE +   LK + +K 
Sbjct: 62  CDIPLGLYIIRGENVVLIGELDVEKEELPAHMVQVPEAEIKRAQKAEKEEMLLKGTMRKR 121

Query: 125 MEDFLD 131
           ME FLD
Sbjct: 122 ME-FLD 126

[Close]

BLAST of Spg023955 vs. ExPASy Swiss-Prot
Match: Q8LFL8 (Sm-like protein LSM1B OS=Arabidopsis thaliana OX=3702 GN=LSM1B PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.0e-29
Identity = 66/126 (52.38%), Postives = 85/126 (67.46%), Query Frame = 0


Query: 5   SWLRPEHIFLTTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLY 64
           SW  PE I+L+TSL +YLDRK+L+ L DGR  +G +RSFD   N VL+ A ER+IVG  Y
Sbjct: 2   SWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQY 61

Query: 65  CDNRKGLVLTRAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEMDSSRLKRSFKKW 124
           CD   GL + R EN +L+GE+D+   ELPP M  VS  EI  AQK E ++S L+ + +K 
Sbjct: 62  CDIPLGLYVIRGENVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRKR 121

Query: 125 MEDFLD 131
           ME FLD
Sbjct: 122 ME-FLD 126

[Close]

BLAST of Spg023955 vs. ExPASy Swiss-Prot
Match: Q54W83 (Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum OX=44689 GN=lsm1 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-15
Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 14  LTTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDNRKGLVL 73
           +++ LG  +D+K+++ L DGR FIGIMR+FD   NIVLQD  ERI VG+ Y D   GL  
Sbjct: 1   MSSGLGDEVDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFF 60

Query: 74  TRAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEM----DSSRLKR 120
            R +N +++GE+D         +  +S  EI  A   E     +  +LKR
Sbjct: 61  IRGDNVVILGEIDPDKEVQEKKLKKISWDEITKAAALEKIKKEEEEQLKR 110

[Close]

BLAST of Spg023955 vs. ExPASy Swiss-Prot
Match: P87173 (U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lsm1 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.1e-13
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 17 SLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDNRKGLVLTRA 76
          SL  Y+DRK+++ L DG+  IGI+RSFD   N++LQ   ERI V ++Y D  +G+ + R 
Sbjct: 15 SLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRG 74

Query: 77 ENAILVGEMD 87
          EN +L+GE+D
Sbjct: 75 ENVVLLGELD 84

[Close]

BLAST of Spg023955 vs. ExPASy Swiss-Prot
Match: Q5E9Z8 (U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus OX=9913 GN=LSM1 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-12
Identity = 41/100 (41.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 15  TTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDNRKGLVLT 74
           T SL   +D+K L+ L DGR  IG +RS D   N+VL    ERI VG  Y D  +G+ + 
Sbjct: 7   TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVV 66

Query: 75  RAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEMDS 115
           R EN +L+GE+D    E    +  VS+ EIL  Q+ E  +
Sbjct: 67  RGENVVLLGEIDLE-KESDTPLQQVSIEEILEEQRVEQQT 105

[Close]

BLAST of Spg023955 vs. ExPASy TrEMBL
Match: A0A6J1GV01 (sm-like protein LSM1B OS=Cucurbita moschata OX=3662 GN=LOC111457720 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 8.4e-35
Identity = 72/121 (59.50%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 10  EHIFLTTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDNRK 69
           E+IF T  +G+YLDRK+L+ LLDGR  IG M +FD HGN V++ AFERI+  N YCD   
Sbjct: 7   EYIFGTPCIGSYLDRKLLILLLDGRCIIGTMCAFDQHGNFVVESAFERIVAENQYCDKPM 66

Query: 70  GLVLTRAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEMDSSRLKRSFKKWMEDFL 129
           GL++ R +NA+ +GEMD  FPELPP +T+VSLP+IL A+KAE++SS LKR+ KKWME+ L
Sbjct: 67  GLLVVRGDNAMFIGEMDLSFPELPPHITAVSLPQILIARKAELESSALKRTLKKWMEELL 126

Query: 130 D 131
           D
Sbjct: 127 D 127

[Close]

BLAST of Spg023955 vs. ExPASy TrEMBL
Match: A0A6J1IXE4 (sm-like protein LSM1B OS=Cucurbita maxima OX=3661 GN=LOC111480024 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.7e-33
Identity = 70/121 (57.85%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 10  EHIFLTTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDNRK 69
           E+IF T  +G+YLDRK+L+ LLDGR  IG M +FD +GN+V++ AFERI   N YCD   
Sbjct: 22  EYIFRTPCIGSYLDRKLLILLLDGRCIIGTMCTFDQYGNVVVESAFERIFAENQYCDKPM 81

Query: 70  GLVLTRAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEMDSSRLKRSFKKWMEDFL 129
           GL++ R +NAI +GEMD  FPELPP +T+VSLP+IL A+KAE+ SS  KR+ KKWME+  
Sbjct: 82  GLLVVRGDNAIFIGEMDLSFPELPPHITAVSLPQILIARKAELQSSVFKRTLKKWMEELF 141

Query: 130 D 131
           D
Sbjct: 142 D 142

[Close]

BLAST of Spg023955 vs. ExPASy TrEMBL
Match: A0A6A2Z8Z4 (U6 snRNA-associated Sm-like protein LSm1 OS=Hibiscus syriacus OX=106335 GN=LSM1 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.3e-30
Identity = 71/126 (56.35%), Postives = 91/126 (72.22%), Query Frame = 0


Query: 5   SWLRPEHIFLTTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLY 64
           SW  P+ IFL+TSL  YLD+K+++ L DGR  +G++RSFD   N+VL+ A ER+IVGNLY
Sbjct: 2   SWAGPDDIFLSTSLATYLDKKLIVLLRDGRKLLGLLRSFDQFANVVLEGACERVIVGNLY 61

Query: 65  CDNRKGLVLTRAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEMDSSRLKRSFKKW 124
           CD   GL + R EN +L+GEMDS   ELPP MT+VS  EI  AQKAE +++ LK S +K 
Sbjct: 62  CDIPLGLYVIRGENVVLIGEMDSEKEELPPHMTAVSAAEIKRAQKAEREATDLKGSMRKR 121

Query: 125 MEDFLD 131
           ME FLD
Sbjct: 122 ME-FLD 126

[Close]

BLAST of Spg023955 vs. ExPASy TrEMBL
Match: A0A5C7HX26 (U6 snRNA-associated Sm-like protein LSm1 OS=Acer yangbiense OX=1000413 GN=LSM1 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.1e-30
Identity = 72/126 (57.14%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 5   SWLRPEHIFLTTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLY 64
           SW  P+ +FL+TSL  YLD+KIL+ L DGR  +G++RSFD   N+VL+ A ERIIVG+LY
Sbjct: 2   SWAGPDDVFLSTSLATYLDKKILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLY 61

Query: 65  CDNRKGLVLTRAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEMDSSRLKRSFKKW 124
           CD   GL + R EN +L+GE+DS   ELPP MT VS  EI  AQKAE D++ LK S +K 
Sbjct: 62  CDIPLGLYVIRGENVVLIGELDSEKEELPPHMTRVSTAEIKRAQKAEKDATLLKGSMRKR 121

Query: 125 MEDFLD 131
           ME FLD
Sbjct: 122 ME-FLD 126

[Close]

BLAST of Spg023955 vs. ExPASy TrEMBL
Match: A0A022Q0J9 (U6 snRNA-associated Sm-like protein LSm1 OS=Erythranthe guttata OX=4155 GN=LSM1 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.1e-30
Identity = 70/126 (55.56%), Postives = 88/126 (69.84%), Query Frame = 0


Query: 5   SWLRPEHIFLTTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLY 64
           SW  PE ++ +TSL +YLD+K+L+ L DGR  +GI+RSFD   N VL+ A ER+IVG LY
Sbjct: 2   SWAGPEDVYTSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGELY 61

Query: 65  CDNRKGLVLTRAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEMDSSRLKRSFKKW 124
           CD   GL + R EN +L+GE+D    ELPP MT VS  EI  AQKAE ++S LK + KKW
Sbjct: 62  CDIPLGLYVIRGENVVLIGELDLEKDELPPHMTRVSAEEIKRAQKAEREASELKGTMKKW 121

Query: 125 MEDFLD 131
           M DFLD
Sbjct: 122 M-DFLD 126

[Close]

BLAST of Spg023955 vs. TAIR 10
Match: AT1G19120.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-30
Identity = 65/126 (51.59%), Postives = 85/126 (67.46%), Query Frame = 0


Query: 5   SWLRPEHIFLTTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLY 64
           SW  P+ IF +TSL AYLD+K+L+ L DGR  +G++RSFD   N VL++A+ER+IVG+LY
Sbjct: 2   SWAAPDDIFFSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLY 61

Query: 65  CDNRKGLVLTRAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEMDSSRLKRSFKKW 124
           CD   GL + R EN +L+GE+D    ELP  M  V   EI  AQKAE +   LK + +K 
Sbjct: 62  CDIPLGLYIIRGENVVLIGELDVEKEELPAHMVQVPEAEIKRAQKAEKEEMLLKGTMRKR 121

Query: 125 MEDFLD 131
           ME FLD
Sbjct: 122 ME-FLD 126

[Close]

BLAST of Spg023955 vs. TAIR 10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-30
Identity = 66/126 (52.38%), Postives = 85/126 (67.46%), Query Frame = 0


Query: 5   SWLRPEHIFLTTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLY 64
           SW  PE I+L+TSL +YLDRK+L+ L DGR  +G +RSFD   N VL+ A ER+IVG  Y
Sbjct: 2   SWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQY 61

Query: 65  CDNRKGLVLTRAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEMDSSRLKRSFKKW 124
           CD   GL + R EN +L+GE+D+   ELPP M  VS  EI  AQK E ++S L+ + +K 
Sbjct: 62  CDIPLGLYVIRGENVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRKR 121

Query: 125 MEDFLD 131
           ME FLD
Sbjct: 122 ME-FLD 126

[Close]

BLAST of Spg023955 vs. TAIR 10
Match: AT3G14080.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-30
Identity = 66/126 (52.38%), Postives = 85/126 (67.46%), Query Frame = 0


Query: 5   SWLRPEHIFLTTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLY 64
           SW  PE I+L+TSL +YLDRK+L+ L DGR  +G +RSFD   N VL+ A ER+IVG  Y
Sbjct: 2   SWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQY 61

Query: 65  CDNRKGLVLTRAENAILVGEMDSRFPELPPDMTSVSLPEILTAQKAEMDSSRLKRSFKKW 124
           CD   GL + R EN +L+GE+D+   ELPP M  VS  EI  AQK E ++S L+ + +K 
Sbjct: 62  CDIPLGLYVIRGENVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRKR 121

Query: 125 MEDFLD 131
           ME FLD
Sbjct: 122 ME-FLD 126

[Close]

BLAST of Spg023955 vs. TAIR 10
Match: AT1G65700.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 48.1 bits (113), Expect = 6.2e-06
Identity = 23/73 (31.51%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 15 TTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDNR-KGLVL 74
          TT L   +D+ I +   DGR+ +G+++ FD   NI+L ++ ER+            GL +
Sbjct: 4  TTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYI 63

Query: 75 TRAENAILVGEMD 87
           R +N  ++GE+D
Sbjct: 64 IRGDNIGVIGELD 76

[Close]

BLAST of Spg023955 vs. TAIR 10
Match: AT1G65700.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 48.1 bits (113), Expect = 6.2e-06
Identity = 23/73 (31.51%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 15 TTSLGAYLDRKILLTLLDGRDFIGIMRSFDHHGNIVLQDAFERIIVGNLYCDNR-KGLVL 74
          TT L   +D+ I +   DGR+ +G+++ FD   NI+L ++ ER+            GL +
Sbjct: 4  TTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYI 63

Query: 75 TRAENAILVGEMD 87
           R +N  ++GE+D
Sbjct: 64 IRGDNIGVIGELD 76

The following BLAST results are available for this feature:

BLAST of Spg023955 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527037.1	5.4e-36	60.66	sm-like protein LSM1B isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022955856.1	1.7e-34	59.50	sm-like protein LSM1B [Cucurbita moschata]	[more]
XP_022980750.1	5.6e-33	57.85	sm-like protein LSM1B [Cucurbita maxima]	[more]
XP_039018543.1	2.6e-30	56.35	sm-like protein LSM1B [Hibiscus syriacus] >KAE8687572.1 U6 snRNA-associated Sm-l...	[more]
KAF8388708.1	2.6e-30	57.94	hypothetical protein HHK36_025388 [Tetracentron sinense]	[more]

BLAST of Spg023955 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q945P8	3.0e-29	51.59	Sm-like protein LSM1A OS=Arabidopsis thaliana OX=3702 GN=LSM1A PE=1 SV=1	[more]
Q8LFL8	3.0e-29	52.38	Sm-like protein LSM1B OS=Arabidopsis thaliana OX=3702 GN=LSM1B PE=1 SV=1	[more]
Q54W83	1.4e-15	40.00	Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum OX...	[more]
P87173	5.1e-13	47.14	U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q5E9Z8	1.1e-12	41.00	U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus OX=9913 GN=LSM1 PE=2 SV=1	[more]

BLAST of Spg023955 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GV01	8.4e-35	59.50	sm-like protein LSM1B OS=Cucurbita moschata OX=3662 GN=LOC111457720 PE=3 SV=1	[more]
A0A6J1IXE4	2.7e-33	57.85	sm-like protein LSM1B OS=Cucurbita maxima OX=3661 GN=LOC111480024 PE=3 SV=1	[more]
A0A6A2Z8Z4	1.3e-30	56.35	U6 snRNA-associated Sm-like protein LSm1 OS=Hibiscus syriacus OX=106335 GN=LSM1 ...	[more]
A0A5C7HX26	2.1e-30	57.14	U6 snRNA-associated Sm-like protein LSm1 OS=Acer yangbiense OX=1000413 GN=LSM1 P...	[more]
A0A022Q0J9	2.1e-30	55.56	U6 snRNA-associated Sm-like protein LSm1 OS=Erythranthe guttata OX=4155 GN=LSM1 ...	[more]

BLAST of Spg023955 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19120.1	2.1e-30	51.59	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.1	2.1e-30	52.38	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.2	2.1e-30	52.38	Small nuclear ribonucleoprotein family protein	[more]
AT1G65700.1	6.2e-06	31.51	Small nuclear ribonucleoprotein family protein	[more]
AT1G65700.2	6.2e-06	31.51	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 16..84 e-value: 9.7E-8 score: 41.7
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 18..82 e-value: 1.1E-9 score: 37.9
None	No IPR available	GENE3D	2.30.30.100		coord: 15..129 e-value: 5.4E-23 score: 83.0
None	No IPR available	PANTHER	PTHR15588:SF13	SM-LIKE PROTEIN LSM1A	coord: 8..129
IPR044642	U6 snRNA-associated Sm-like protein Lsm1/8	PANTHER	PTHR15588	LSM1	coord: 8..129
IPR034104	Sm-like protein Lsm1	CDD	cd01728	LSm1	coord: 15..85 e-value: 2.23258E-28 score: 97.2016
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 17..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg023955.1	Spg023955.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
cellular_component	GO:1990726	Lsm1-7-Pat1 complex
cellular_component	GO:0000932	P-body
molecular_function	GO:0000339	RNA cap binding