Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GACAGGGGGCCTCAAGATGGCTCGATTTCAAGGTATCCGCCTCAGTCGTTGATCAGGGTGAACTCGGACATGATTCCTATCCAGGTACGCTCTCCTTCTCTGGGTCTTTCTCCTTCTATTCCAATCGAGAGGGGAGGGTGGTTGTGTTCAGGACGGCTAGTCTATTTTAAGCGTCCACTGACTGATCGAGAAACCTCCGACCTTTTGACTCTCCTATCATTGATTGGGGAGACCACTTTTAGCGCTTCTAGAAGGGATCTCCGCTTGTGGAGCCCTGACCCGCCTCGAGGTTTCTCTTGTCGATCATTTTTCCATTGCTTATTAGACCCTTCCCCCATCGATGTTTCCATCTTTTCTTTGCTTTGGAAGGTGAAAGCCCCAAAGAAGGTGCAGTTTTTTATTTGGCAGGTTATCCACGGATGAGTTAACACCCTTGATCGGCTATCTAGAAAGATTCCTCGCTTATTTGGGCCCTTTTGTTGCATTCTCTGTCGGATGGCGGAGGAAGACCTTGATCATATTTTGTGGCATTGCGACTTTGCTGCGACTGTTTGGGACGAGTTCTTTGGTCTTTTCGACTTGCAGTTTGCCAGACATAGAGGTCTTAGAGAGATGATCGAGGAGTTCCTTCCCCATCCTCCTTTGTTAAATATAATGTTCCCCTTTGGGGCGAGAGAAACAACAGACTTTTAGAGGGTTGGAGAGGGATTCAGTTGAGGTTTGGTCCCTTGTTAAATATAATGTTTCCCTTTGGGCGTCGGTGACGCGTTTGTTTTGTAATTATCCCATTGGTCTCATTATTTTGGATTGGAGGCCCTTCTTCTAA
mRNA sequence
GACAGGGGGCCTCAAGATGGCTCGATTTCAAGGTATCCGCCTCAGTCGTTGATCAGGGTGAACTCGGACATGATTCCTATCCAGGTACGCTCTCCTTCTCTGGGTCTTTCTCCTTCTATTCCAATCGAGAGGGGAGGGTGGTTGTGTTCAGGACGGCTAGTCTATTTTAAGCGTCCACTGACTGATCGAGAAACCTCCGACCTTTTGACTCTCCTATCATTGATTGGGGAGACCACTTTTAGCGCTTCTAGAAGGGATCTCCGCTTGTGGAGCCCTGACCCGCCTCGAGGTGAAAGCCCCAAAGAAGGTGCAGTTTTTTATTTGGCAGACCTTGATCATATTTTGTGGCATTGCGACTTTGCTGCGACTGTTTGGGACGAGTTCTTTGGTCTTTTCGACTTGCAGTTTGCCAGACATAGAGAGAAACAACAGACTTTTAGAGGGTTGGAGAGGGATTCAGTTGAGGTTTGGTCCCTTGTTAAATATAATGTTTCCCTTTGGGCGTCGGTGACGCGTTTGTTTTGTAATTATCCCATTGGTCTCATTATTTTGGATTGGAGGCCCTTCTTCTAA
Coding sequence (CDS)
GACAGGGGGCCTCAAGATGGCTCGATTTCAAGGTATCCGCCTCAGTCGTTGATCAGGGTGAACTCGGACATGATTCCTATCCAGGTACGCTCTCCTTCTCTGGGTCTTTCTCCTTCTATTCCAATCGAGAGGGGAGGGTGGTTGTGTTCAGGACGGCTAGTCTATTTTAAGCGTCCACTGACTGATCGAGAAACCTCCGACCTTTTGACTCTCCTATCATTGATTGGGGAGACCACTTTTAGCGCTTCTAGAAGGGATCTCCGCTTGTGGAGCCCTGACCCGCCTCGAGGTGAAAGCCCCAAAGAAGGTGCAGTTTTTTATTTGGCAGACCTTGATCATATTTTGTGGCATTGCGACTTTGCTGCGACTGTTTGGGACGAGTTCTTTGGTCTTTTCGACTTGCAGTTTGCCAGACATAGAGAGAAACAACAGACTTTTAGAGGGTTGGAGAGGGATTCAGTTGAGGTTTGGTCCCTTGTTAAATATAATGTTTCCCTTTGGGCGTCGGTGACGCGTTTGTTTTGTAATTATCCCATTGGTCTCATTATTTTGGATTGGAGGCCCTTCTTCTAA
Protein sequence
DRGPQDGSISRYPPQSLIRVNSDMIPIQVRSPSLGLSPSIPIERGGWLCSGRLVYFKRPLTDRETSDLLTLLSLIGETTFSASRRDLRLWSPDPPRGESPKEGAVFYLADLDHILWHCDFAATVWDEFFGLFDLQFARHREKQQTFRGLERDSVEVWSLVKYNVSLWASVTRLFCNYPIGLIILDWRPFF
Homology
BLAST of Spg023931 vs. NCBI nr
Match:
TYK09969.1 (calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa])
HSP 1 Score: 79.7 bits (195), Expect = 3.0e-11
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 0
Query: 56 FKRPLTDRETSDLLTLLSLIGETTFSASRRDLRLWSPDP-----------------PRGE 115
F+R L+DRETS+++ L+SL+ +F RRD+ +WSP P P E
Sbjct: 175 FRRALSDRETSNVVALISLLESHSFRLGRRDVTVWSPFPLEGFLCKSFFQCLVNSTPTSE 234
Query: 116 S----------PKEGAVF---YLADLDHILWHCDFAATVWDEFFGLFDLQFARHREKQQT 146
S P++ +F DLDH+LWHC+ + VWD+F F L +ARHR+ + T
Sbjct: 235 SVSSLIWRIKVPRKFVLFSWQVEEDLDHLLWHCELVSCVWDDFLQTFGLSYARHRDVRGT 294
BLAST of Spg023931 vs. NCBI nr
Match:
XP_016900613.1 (PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo])
HSP 1 Score: 77.0 bits (188), Expect = 1.9e-10
Identity = 37/119 (31.09%), Postives = 57/119 (47.90%), Query Frame = 0
Query: 108 LADLDHILWHCDFAATVWDEFFGLFDLQFARHRE-------------------------- 167
L DLDH+L H A+ +WD F F L +ARHR+
Sbjct: 53 LEDLDHLLGHSALASGIWDAFLQTFGLLYARHRDVRGMIEEFLLNLPCGERGRFLWRACV 112
Query: 168 -----------KQQTFRGLERDSVEVWSLVKYNVSLWASVTRLFCNYPIGLIILDWRPF 190
++ F G+ER + E+W +++Y+VSLW S+++ FCNYP+ +I+ W F
Sbjct: 113 CAILWVLWDETNRRVFWGVERGTGEIWLVIRYHVSLWDSISKTFCNYPLDMILYSWATF 171
BLAST of Spg023931 vs. NCBI nr
Match:
TYK19563.1 (uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa])
HSP 1 Score: 72.4 bits (176), Expect = 4.7e-09
Identity = 47/133 (35.34%), Postives = 68/133 (51.13%), Query Frame = 0
Query: 61 TDRETSDLLTLLSLIGETTFSASRRDLRLWSPDPPRG-ESPKEGAVFY--LADLDHILWH 120
T RET ++ +LLSL+ +F RRD S R + EG + + + LW
Sbjct: 273 TLRETMEVASLLSLLEGCSFREGRRDEFDVSIAGQRDVRAMTEGFILHPPFKEKGRFLWL 332
Query: 121 CDFAATVWDEFFGLFDLQFARHREKQQTFRGLERDSVEVWSLVKYNVSLWASVTRLFCNY 180
+ A +WD + + FRG +RD E+ SLV+++VSLW SV++LFCNY
Sbjct: 333 AEVCAIMWDIW----------GERNDRVFRGKDRDLSEIGSLVRFHVSLWTSVSKLFCNY 392
Query: 181 PIGLIILDWRPFF 191
+G I L PFF
Sbjct: 393 SLGNINLSLIPFF 395
BLAST of Spg023931 vs. NCBI nr
Match:
KAG7014044.1 (hypothetical protein SDJN02_24216, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 58.9 bits (141), Expect = 5.4e-05
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 0
Query: 146 FRGLERDSVEVWSLVKYNVSLWASVTRLFCNYPIGLIILDWRP 189
FRGLER +VW+ + + VSLW S T+ CNY +GLI+LD RP
Sbjct: 138 FRGLERSWSDVWAFITFKVSLWTSTTKSLCNYSLGLILLDRRP 180
BLAST of Spg023931 vs. NCBI nr
Match:
TYJ96204.1 (nuclear cap-binding protein subunit 2 [Cucumis melo var. makuwa])
HSP 1 Score: 58.5 bits (140), Expect = 7.1e-05
Identity = 28/70 (40.00%), Postives = 36/70 (51.43%), Query Frame = 0
Query: 71 LLSLIGETTFSASRRDLRLWSPDPPRGESPKEGAVFYLADLDHILWHCDFAATVWDEFFG 130
LLSL+ E F RRD+R+WSP P E DLDH+LW C + VW F
Sbjct: 427 LLSLLDECNFVVGRRDIRIWSPKPSGEE-----------DLDHLLWDCQYTRAVWSWFLQ 485
Query: 131 LFDLQFARHR 141
FD++ A +
Sbjct: 487 EFDVRIASQK 485
BLAST of Spg023931 vs. ExPASy TrEMBL
Match:
A0A5D3CI74 (Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00980 PE=4 SV=1)
HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 0
Query: 56 FKRPLTDRETSDLLTLLSLIGETTFSASRRDLRLWSPDP-----------------PRGE 115
F+R L+DRETS+++ L+SL+ +F RRD+ +WSP P P E
Sbjct: 175 FRRALSDRETSNVVALISLLESHSFRLGRRDVTVWSPFPLEGFLCKSFFQCLVNSTPTSE 234
Query: 116 S----------PKEGAVF---YLADLDHILWHCDFAATVWDEFFGLFDLQFARHREKQQT 146
S P++ +F DLDH+LWHC+ + VWD+F F L +ARHR+ + T
Sbjct: 235 SVSSLIWRIKVPRKFVLFSWQVEEDLDHLLWHCELVSCVWDDFLQTFGLSYARHRDVRGT 294
BLAST of Spg023931 vs. ExPASy TrEMBL
Match:
A0A1S4DXB1 (uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=4 SV=1)
HSP 1 Score: 77.0 bits (188), Expect = 9.3e-11
Identity = 37/119 (31.09%), Postives = 57/119 (47.90%), Query Frame = 0
Query: 108 LADLDHILWHCDFAATVWDEFFGLFDLQFARHRE-------------------------- 167
L DLDH+L H A+ +WD F F L +ARHR+
Sbjct: 53 LEDLDHLLGHSALASGIWDAFLQTFGLLYARHRDVRGMIEEFLLNLPCGERGRFLWRACV 112
Query: 168 -----------KQQTFRGLERDSVEVWSLVKYNVSLWASVTRLFCNYPIGLIILDWRPF 190
++ F G+ER + E+W +++Y+VSLW S+++ FCNYP+ +I+ W F
Sbjct: 113 CAILWVLWDETNRRVFWGVERGTGEIWLVIRYHVSLWDSISKTFCNYPLDMILYSWATF 171
BLAST of Spg023931 vs. ExPASy TrEMBL
Match:
A0A5D3D7T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00660 PE=4 SV=1)
HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09
Identity = 47/133 (35.34%), Postives = 68/133 (51.13%), Query Frame = 0
Query: 61 TDRETSDLLTLLSLIGETTFSASRRDLRLWSPDPPRG-ESPKEGAVFY--LADLDHILWH 120
T RET ++ +LLSL+ +F RRD S R + EG + + + LW
Sbjct: 273 TLRETMEVASLLSLLEGCSFREGRRDEFDVSIAGQRDVRAMTEGFILHPPFKEKGRFLWL 332
Query: 121 CDFAATVWDEFFGLFDLQFARHREKQQTFRGLERDSVEVWSLVKYNVSLWASVTRLFCNY 180
+ A +WD + + FRG +RD E+ SLV+++VSLW SV++LFCNY
Sbjct: 333 AEVCAIMWDIW----------GERNDRVFRGKDRDLSEIGSLVRFHVSLWTSVSKLFCNY 392
Query: 181 PIGLIILDWRPFF 191
+G I L PFF
Sbjct: 393 SLGNINLSLIPFF 395
BLAST of Spg023931 vs. ExPASy TrEMBL
Match:
A0A5D3BB82 (Nuclear cap-binding protein subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold261G00390 PE=3 SV=1)
HSP 1 Score: 58.5 bits (140), Expect = 3.4e-05
Identity = 28/70 (40.00%), Postives = 36/70 (51.43%), Query Frame = 0
Query: 71 LLSLIGETTFSASRRDLRLWSPDPPRGESPKEGAVFYLADLDHILWHCDFAATVWDEFFG 130
LLSL+ E F RRD+R+WSP P E DLDH+LW C + VW F
Sbjct: 427 LLSLLDECNFVVGRRDIRIWSPKPSGEE-----------DLDHLLWDCQYTRAVWSWFLQ 485
Query: 131 LFDLQFARHR 141
FD++ A +
Sbjct: 487 EFDVRIASQK 485
BLAST of Spg023931 vs. ExPASy TrEMBL
Match:
A5AK27 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_008195 PE=4 SV=1)
HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 39/142 (27.46%), Postives = 63/142 (44.37%), Query Frame = 0
Query: 56 FKRPLTDRETSDLLTLLSLIGETTFSASRRDLRLWSPDPPRGESPKEGAVFYLADLDH-- 115
F+R LTD E DL +L+ + S S D R WS P + K F+LA H
Sbjct: 1703 FRRNLTDSEIEDLESLMRSLDRLHISPSVPDKRSWSISPSGLFTVKS---FFLALSQHSE 1762
Query: 116 --------ILWHCDFAATVWDEFFGLFDLQFARHREKQ-QTFRGLERDSVEVWSLVKYNV 175
+W+ +W + L + RE+ + F R+S +W +++
Sbjct: 1763 SPPVFPTKFVWNSQRGVVLWQD--ACIALMWVVWRERNARIFEDKARNSGCLWDSIRFLA 1822
Query: 176 SLWASVTRLFCNYPIGLIILDW 187
SLWA +++F P+ ++ LDW
Sbjct: 1823 SLWAFCSKVFKGIPLNMLQLDW 1839
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYK09969.1 | 3.0e-11 | 35.83 | calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa] | [more] |
XP_016900613.1 | 1.9e-10 | 31.09 | PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo] | [more] |
TYK19563.1 | 4.7e-09 | 35.34 | uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa] | [more] |
KAG7014044.1 | 5.4e-05 | 55.81 | hypothetical protein SDJN02_24216, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
TYJ96204.1 | 7.1e-05 | 40.00 | nuclear cap-binding protein subunit 2 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3CI74 | 1.4e-11 | 35.83 | Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
A0A1S4DXB1 | 9.3e-11 | 31.09 | uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=... | [more] |
A0A5D3D7T2 | 2.3e-09 | 35.34 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BB82 | 3.4e-05 | 40.00 | Nuclear cap-binding protein subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=... | [more] |
A5AK27 | 1.7e-04 | 27.46 | Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI... | [more] |
Match Name | E-value | Identity | Description | |