Spg023112 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg023112
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold12: 29609928 .. 29614999 (+)
RNA-Seq ExpressionSpg023112
SyntenySpg023112
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCTCGAGGACCTATTCGAGCACTAGAATTGAAGAACTGCTCAAGGAACTGTTCGAGCAAGAAAGAGAAGATGAGGAGCTACATGCTCCAATTGACAAAGAGGAGGTCCAGGAGATCACCGTGGACCAAATGCCCAAGAAAAGGGGCAGAGATGACGAAGATGAGGCCGAGGGGAGGCAAAAGAAGAGGAAGATTACCAATTCCCTCAGGAGGCCTAGCACACGGGGAGCGACTTCTGTGCTTCCTCATGTCCAGACACCACCACCACCATCGCCTGCAAAGAGAGAATCCCCCACTCCTCGGGTAAAGAAAGCGTCAATCACAAAATTGAGGGTGGAACGACAGGTGGAGCCACACGTAGAGACTCAGGCCCGCCTCGCTTTTATGAAAAAGAGGGCCTTGATGTGTGATGGGTCGTTAGACTGCCAAATAAATTTGTAATTCCACAACACTAAAACCACTTTCGTAGTAATAGCGGTCAGGATCAAACACAGGGAAGGGAGTATGATTGCAGCAGCGCCGAGATGCCAAAGGGTAGCATCTCGATGCTCTCATCTATGGAAACTTGGCTGCTGCAACATCTCTTTTCTACTTTGCTTCACTTCATATGCTTCCTTAGCTTTCTAAACCTCAATCAACTAAGAAAAACCCAATTTCCTCCCTAGAACTTAATTCCTACAAAATAAACACATAAGAGTATGATATTGCCCAAATAAATCTCTAAGATTAACAATAAAATACCAGGAAAAATAGCTTATAACATGAGCTATCAGACGGTGCCATCAGCGCTGACGGGCCAGAGTTGTCGAGGCTTCGGGTCAAATAAATTTATAATCACCAAACACTAAACTACTTTGCAGTAGTAGTGGTCGGGGTCGAACACAGGGAGCACGACTATAATGTGCTTAACTTACATTTTTTGCGACAACTAGACTAATGGGGGGATTTGGATATGTGATAGATAATTGCGAGGAAAGATAAATTGGGAGAATTTAAATGACGGAAAATTAAATGCACAAAATAAAAGGATAGGCAGGTTAATCTTACAACAAGGATCACTATAATCGAAGACGTTTTAGTTTCAGTATGATTTATTTCCTACATTGATTATCGAGAAATTAATTCACCAATTGAAAGCCTAATCGGCTTAACTAGAAAAACCCAGCTAGCATAATATCCTTAAATTCCTAAGTCCGACCAATGCATCGAGACTAGTCCTAACCGATTAATAAGCTAATCGTGCACATTAACTACTAATTGATTGCATTAAGAACGATGATGATTAGAATGCTCTAAATTAACTAGGAAAAGCCTAAATTAACATCAAGCACATATTTAGACCCTAGCTATTTCATGCCAATTGCTTAATTTGGGATAACACGTCAAATTTCTACATGATTAGACCTATTTGCTACTTTAATTAACATATTATTTTAACAAGCTATGGTCGAGGTTGTCAATCTCTACTAACGTTGCTAAATTTATAAACATTGAGTCTAAACAACATTCAATACAGTAAATCATAGACTAATGGGGGGATTTGGATATGTGATAGATAATTGCGAGGAAAGATAAATTGGGAGAATTTAAATGACGGAAAATTAAATGCACAAAATAAAAGGATAGGCAGGTTAATCTTACAACAAGGATCACTATAATCGGAGACGTTTTAGTTTGAGTATGATTTATTTCCTTCATTGATTATCGAGAAATTAATTCACCAATTGAAAGCCTAATCAGCTTAACTAGAAAAACCCAGCAAGCATAATATCTTTAAATTCCTAAGTCCGACCAATGCATCGAGACTAGTCCTAACCGATTAATAAGCTAATCGTGCACATTAACTACTAATTGATTGCATTAAGAATGATGATGATTAGAATGCTCTAAATTAACTAGGAAAAGCCTAAATTAACATCAAGCACATATTTAGACCCTAGTTATTTCATGCCAATTGCTTAATTTGGGATAACACGTCAAATTTCTACATGATTATACCTATTCGCTACTTTAATTAACATATTATTTTAACAAGCTATGGTCGAGGTTGTCATTCTCTACTAACATTGCTAAATTTATAAACATTGAGTCTAAACAACATTCAATACAGTAAATCATGCAAGGGATAATACAAATCTCATGAAATAAAAATCATACTTACAACTGAGGTCCTGATTACAACAATCCAAGCTTAGACAGCCATAGGCGAGCCTAATCTAAGCCCCCAAGGCTTGATTAACCCACCCAAAACTGACCTAAACTTGGGCGAACTGAAACGTTGAGAAAAAAATGAGAAGAACAGTAGAAGAATCACTAAAAACAGAGTTTGGATGACCAAGATACGAAAAAACGATTTTATAGCGCAATCGTAGCGTCAAGATAATAGAAAGTAGTTTCTCGACGCTAGGCATTCTGTCTTCTGCGTGTTTTCACGGCAGCGTCGAGACGCTAGTGCTAGTGTCTCGATGCTAGCCTGCACTCCAGCCTATTGCTTTATTTTTCTTAGATTTCTTCCAAATTGCTTGGCTTGGGACTCGAACCTTTGACTCTTTAGCATTAATCTTCGGGCTCGCCATGGTTCGCTCGGGTCTTCTCACCTCCTCTTCATCCGTAAACTCCAAGTTGGCTAAAAAACGCTCCAAAATGACCGATTTAGTACCAAATTGTGTGATTCGCTGTAAACCGAGACTTTCCTTGGATCATTTACTCTTGTCATCTATTGTGGTTTCATGGTTGAATTTAAGTTGTTGGGATTTACTAATTGAAAAGAAGAAAAGAAAAGAATGGAAATAAAGAAGAAAAAAAAAAGAAAAGAAGAGGAAAAGGAAAAGGAAAAACAAAAAAAAAAGGAAAAAGAAAAGAAAGGAAGTGGGAAATGACAGCAAAAAAAACCCACCACCGACAATGATCCTTTTCACTTCATTTCCAGCCATTTTCTCATCATTTTCCATCCAAAATTTCAGAGCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGATTTTCGTGGTTTTGAGGTTAAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGATTCTGAGTCCAACCTGACAACCTCTGGTTTTGATTCGGTTTGAGCTACACAGAAGGAACTAAGAGGTGAGGTTTGATTTTCTTGAAAGTTAGTTCATTTTATAAAAAATTTCATGAAGGCAGCTTGAGCTAAATCGTATGAGAGTTAATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTAGTTTTTCGAGTATTCTGGGGTGTACAAGTTGAATCCGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAACTTCCTACAACTTTCATGAAGAATTCGTGAGCCAAAAAAGACTTGAAGTAGGCTTAATTTCAGGAGATAGATAAAGGGCAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTCCGGGGCGTTTCTGGAAACATTGGTTGAGAATATCATTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCCAAAATGAAGAGTTTGATGTATAGTACATTAATTTTGGTTAAGTACTGAGGAAGTTATGGGTGTTGGAACGTGTGGTATTGAATCTGGAAAATCTGGAAAGTAGAATGTGGAGTGAGATTTCTTATTCAAGTGTTTAGAATTCATGAGCATGGAAAGACAGAGCTAATTATGGTTCTAATGCTCGGTTTGGGTTGTTTGACAGGCCAAGAGGAAATAGGTTGGGTCTACAAACCAGGGAACTAGCTAAGATTGTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAACGGTTGTTCATGTTTAGATGTTTTACATGCTTTTCTATGAATGATACATGGTTTTTATGAATGGTTTCAAGCTTAAGTTATGAGCTTAGATTTTCTAATGAGGTTTATAAATGAGCACATGATTATTGAGTTTCTGAAAAAATAGTTGAAATGACATCCTTTTAAGCCAAACATGTATTAGCAAGAATTATTTAAAGATTTTCGGTTTTTCTTCCACGAGCAAGCTGAGTAAGCTTGGGTTTTACGAAAGATAACGATAAGCAGGCATGTTTAAACGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGCTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGTTGTCGTGAGTTCTGGGCGGGCCCCACTACAACAAAGACGATGGGAGTGCTGGGCAAGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGATGAACCTGCGATGTTTTTTAGAAAGCTTTTATCATAGCACGTTTATGTTTAACGCCTTGGTTGAGCAGCTTTATACGTTTAAAGTTTTATCACGTGTTCTGATTTCCGAATGTACAATTTTAAATGTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTGTATATTGTAAATGTTTTGTAAGGATTGGATAATTTAGTCCTAGAGGTCGTGGTTCTATAAACCCCAGTTGTATATGTTTTTGGTTGTGATATCTATATCAGGTTATTTTCCAAACCGAGTTATGTTAGGGCGGCACCTCGTGTATGTTGAAAGGTTTTCAAGGATTCCGTTGTGTTGTGTTTCACGTAGAATATTTTATATCTAAGATTAGTATGCTTATCAGGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCATTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATTCGCTCTCAATGTATCCAATGCTCGAATACCTTCAAAGATAGACATTTAA

mRNA sequence

ATGTGCTCGAGGACCTATTCGAGCACTAGAATTGAAGAACTGCTCAAGGAACTGTTCGAGCAAGAAAGAGAAGATGAGGAGCTACATGCTCCAATTGACAAAGAGGAGGTCCAGGAGATCACCGTGGACCAAATGCCCAAGAAAAGGGGCAGAGATGACGAAGATGAGGCCGAGGGGAGGCAAAAGAAGAGGAAGATTACCAATTCCCTCAGGAGGCCTAGCACACGGGGAGCGACTTCTGTGCTTCCTCATGTCCAGACACCACCACCACCATCGCCTGCAAAGAGAGAATCCCCCACTCCTCGGGTAAAGAAAGCGTCAATCACAAAATTGAGGGTGGAACGACAGGTGGAGCCACACGTAGAGACTCAGGCCCGCCTCGCTTTTATGAAAAAGAGGGCCTTGATGTGTGATGGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTAGTTTTTCGAGTATTCTGGGGTGTACAAGTTGAATCCGAAGCTCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGTTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCATTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATTCGCTCTCAATGTATCCAATGCTCGAATACCTTCAAAGATAGACATTTAA

Coding sequence (CDS)

ATGTGCTCGAGGACCTATTCGAGCACTAGAATTGAAGAACTGCTCAAGGAACTGTTCGAGCAAGAAAGAGAAGATGAGGAGCTACATGCTCCAATTGACAAAGAGGAGGTCCAGGAGATCACCGTGGACCAAATGCCCAAGAAAAGGGGCAGAGATGACGAAGATGAGGCCGAGGGGAGGCAAAAGAAGAGGAAGATTACCAATTCCCTCAGGAGGCCTAGCACACGGGGAGCGACTTCTGTGCTTCCTCATGTCCAGACACCACCACCACCATCGCCTGCAAAGAGAGAATCCCCCACTCCTCGGGTAAAGAAAGCGTCAATCACAAAATTGAGGGTGGAACGACAGGTGGAGCCACACGTAGAGACTCAGGCCCGCCTCGCTTTTATGAAAAAGAGGGCCTTGATGTGTGATGGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTAGTTTTTCGAGTATTCTGGGGTGTACAAGTTGAATCCGAAGCTCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGTTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCATTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACATTCGCTCTCAATGTATCCAATGCTCGAATACCTTCAAAGATAGACATTTAA

Protein sequence

MCSRTYSSTRIEELLKELFEQEREDEELHAPIDKEEVQEITVDQMPKKRGRDDEDEAEGRQKKRKITNSLRRPSTRGATSVLPHVQTPPPPSPAKRESPTPRVKKASITKLRVERQVEPHVETQARLAFMKKRALMCDGAQDFRAKQEDLWFSLVFRVFWGVQVESEALFGYIPLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVHWLHAIFRTKLAGGPGGGVTFALNVSNARIPSKIDI
Homology
[Close]
BLAST of Spg023112 vs. NCBI nr
Match: KAA0060199.1 (uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ95571.1 uncharacterized protein E5676_scaffold767G00770 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 5.5e-16
Identity = 53/81 (65.43%), Postives = 59/81 (72.84%), Query Frame = 0 

Query: 175 LLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVHWLHAIFR 234
           L TLSVLRDND VVEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR
Sbjct: 75  LSTLSVLRDNDAVVEIELPVPDTLPTSAESFESNSRST------GIVRGDDVCWLHAVFR 134

Query: 235 TKLAGGPGGGVTFALNVSNAR 256
            K AGGPGGGVTF +   +A+
Sbjct: 135 AKTAGGPGGGVTFNIAKGSAQ 149

[Close]
BLAST of Spg023112 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 7.2e-16
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 0 

Query: 163 QVESEALFGYI------PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSS---TF 222
           ++ S  L+G +      PL TLSVLRDND VVEIELPVPDTLPTSAESS S+SS+    +
Sbjct: 3   EILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELY 62

Query: 223 QEGQRVSL-------EEDDVHWLHAIFRTKLAGGPGGGV 246
            E   V +        EDDV WLHA+FR K AGGPGGGV
Sbjct: 63  VEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg023112 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 7.2e-16
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 0 

Query: 163 QVESEALFGYI------PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSS---TF 222
           ++ S  L+G +      PL TLSVLRDND VVEIELPVPDTLPTSAESS S+SS+    +
Sbjct: 3   EILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELY 62

Query: 223 QEGQRVSL-------EEDDVHWLHAIFRTKLAGGPGGGV 246
            E   V +        EDDV WLHA+FR K AGGPGGGV
Sbjct: 63  VEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg023112 vs. NCBI nr
Match: TYK25935.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 6.1e-15
Identity = 56/105 (53.33%), Postives = 63/105 (60.00%), Query Frame = 0 

Query: 174 PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQ------------------- 233
           PL TLSVLRDND VVEIELP+PDTLPTSAESS S+SS+  +                   
Sbjct: 322 PLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDAR 381

Query: 234 -------EGQRVSLEEDDVHWLHAIFRTKLAGGPGGGVTFALNVS 253
                  EG    +  DDV WLHAIFR K AGGPGGGVT + +VS
Sbjct: 382 AASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGGGVTPSKSVS 426

[Close]
BLAST of Spg023112 vs. NCBI nr
Match: KAA0040194.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 6.1e-15
Identity = 56/105 (53.33%), Postives = 63/105 (60.00%), Query Frame = 0 

Query: 174 PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQ------------------- 233
           PL TLSVLRDND VVEIELP+PDTLPTSAESS S+SS+  +                   
Sbjct: 322 PLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDAR 381

Query: 234 -------EGQRVSLEEDDVHWLHAIFRTKLAGGPGGGVTFALNVS 253
                  EG    +  DDV WLHAIFR K AGGPGGGVT + +VS
Sbjct: 382 AASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGGGVTPSKSVS 426

[Close]
BLAST of Spg023112 vs. ExPASy TrEMBL
Match: A0A5D3BAD1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00770 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-16
Identity = 53/81 (65.43%), Postives = 59/81 (72.84%), Query Frame = 0 

Query: 175 LLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVHWLHAIFR 234
           L TLSVLRDND VVEIELPVPDTLPTSAES  S+S ST        +  DDV WLHA+FR
Sbjct: 75  LSTLSVLRDNDAVVEIELPVPDTLPTSAESFESNSRST------GIVRGDDVCWLHAVFR 134

Query: 235 TKLAGGPGGGVTFALNVSNAR 256
            K AGGPGGGVTF +   +A+
Sbjct: 135 AKTAGGPGGGVTFNIAKGSAQ 149

[Close]
BLAST of Spg023112 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.5e-16
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 0 

Query: 163 QVESEALFGYI------PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSS---TF 222
           ++ S  L+G +      PL TLSVLRDND VVEIELPVPDTLPTSAESS S+SS+    +
Sbjct: 3   EILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELY 62

Query: 223 QEGQRVSL-------EEDDVHWLHAIFRTKLAGGPGGGV 246
            E   V +        EDDV WLHA+FR K AGGPGGGV
Sbjct: 63  VEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg023112 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.5e-16
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 0 

Query: 163 QVESEALFGYI------PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSS---TF 222
           ++ S  L+G +      PL TLSVLRDND VVEIELPVPDTLPTSAESS S+SS+    +
Sbjct: 3   EILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELY 62

Query: 223 QEGQRVSL-------EEDDVHWLHAIFRTKLAGGPGGGV 246
            E   V +        EDDV WLHA+FR K AGGPGGGV
Sbjct: 63  VEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]
BLAST of Spg023112 vs. ExPASy TrEMBL
Match: A0A5A7T9P7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G00060 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-15
Identity = 56/105 (53.33%), Postives = 63/105 (60.00%), Query Frame = 0 

Query: 174 PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQ------------------- 233
           PL TLSVLRDND VVEIELP+PDTLPTSAESS S+SS+  +                   
Sbjct: 322 PLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDAR 381

Query: 234 -------EGQRVSLEEDDVHWLHAIFRTKLAGGPGGGVTFALNVS 253
                  EG    +  DDV WLHAIFR K AGGPGGGVT + +VS
Sbjct: 382 AASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGGGVTPSKSVS 426

[Close]
BLAST of Spg023112 vs. ExPASy TrEMBL
Match: A0A5D3DR18 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00320 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-15
Identity = 56/105 (53.33%), Postives = 63/105 (60.00%), Query Frame = 0 

Query: 174 PLLTLSVLRDNDVVVEIELPVPDTLPTSAESSRSSSSSTFQ------------------- 233
           PL TLSVLRDND VVEIELP+PDTLPTSAESS S+SS+  +                   
Sbjct: 322 PLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDAR 381

Query: 234 -------EGQRVSLEEDDVHWLHAIFRTKLAGGPGGGVTFALNVS 253
                  EG    +  DDV WLHAIFR K AGGPGGGVT + +VS
Sbjct: 382 AASYVCWEGSAGIVRGDDVCWLHAIFRAKTAGGPGGGVTPSKSVS 426

The following BLAST results are available for this feature:
BLAST of Spg023112 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060199.15.5e-1665.43uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa] >TYJ9... [more]
TYK27998.17.2e-1657.58reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0066851.17.2e-1657.58reverse transcriptase [Cucumis melo var. makuwa][more]
TYK25935.16.1e-1553.33gag/pol protein [Cucumis melo var. makuwa][more]
KAA0040194.16.1e-1553.33gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of Spg023112 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg023112 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BAD12.7e-1665.43Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3DX393.5e-1657.58Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A5A7VMG93.5e-1657.58Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27... [more]
A0A5A7T9P72.9e-1553.33Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G000... [more]
A0A5D3DR182.9e-1553.33Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0032... [more]
BLAST of Spg023112 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..217
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..218

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg023112.1Spg023112.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0016740 transferase activity