Spg023040 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg023040
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S ribosomal protein L13
Location	scaffold12: 30647400 .. 30649416 (+)
RNA-Seq Expression	Spg023040
Synteny	Spg023040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGGAACGAGGAGACTGGAATTGCAGAAGGGGGCGCAGAGAGGAAAAAGGTTCTCTTCAATTTCAATTCAGTGTGTTGCTTTCCTCTGCTGAATTTAATTTGATCTTCGTTTTTCGAAATCTATACATCGTTAAATTAGGGTTCTTAGTTCCTTCTCAACCAGTCCTGCTCAAGCTGTTTAGAGGGATCGTTCGGTTTTATTTTTTTTTGCCTCTCTGCATTTTCTTGGTATCCTACAAATGGTTGCGATGTCGGTTCCGCTTGTGGTTTTTCTTCTAGGGATTTGGCTTTCTTTTTCCAATCTTCACTTAGGGTTTTATTTGCTATTGTTGTTGGCAGTTTTGTGTTCGAATTAACCTTGTCTTCTTTGGAAAAGAAAATGTTGGTGTATTTGTTTGCTAGTGTGTCAACGAGATTTATCTGGATCGACCAATTTCATGATATGTAGAACATGAACAAAGTTCCTTTCTTAGGTTGTAATTTGCTAACTCAAATGCTTTAGCAGGTAAGCCATGAAGCACAACAATGTTATTCCTAGTGGGCACTTTAGGAAGCACTGGCAAAATTATGTTAGAACTTGGTTCAACCAACCTGCCAGGAAAACAAGGAGAAGGAATGGTGAGTGCCAGTTCTCAATTTCTGTTTCTGGGTTTTCTCTTCTGCCATTTCATCGTTGGTTATATGTTGTTTTGTATTGTTCTAACTGTTTTTTCTTGTGGATCATCACCAGCTCGTCAAGAAAAGGCTGTGAAAAATTTCCCTCGCCCTACTGCTGGACCACTTCGTCCTATTGTTCATGGACAAACATTGAAGTATAACATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTGGAAGAGTTGAAGGTGGGATTATTTTTTGGCTTTTGAGTTTTTTGGATGATATATGCATATATAACTCAGTTGATTCTGTGTTTCGTGTTTTCATTTCGATAAATGAAATATTGGAACTGCATCGTCATTTTTTTTTCAAATGTGAATGAACAGAAGCTTTATTTATATAAACCTTCGTTTTTTTATATGAGGTGTGCTCTGGTTCTGTACTTGGTAAAATTGTTTCTTTGGAAGTCCTGCGAGCATGACATGGAGTTGTAAAGTTAAACATCTGAAATATCTGCACAGTTGTGAATGCTGATTAACGCATAGTTCTTCTAGAGTGCACTAGAGTTGAGTAGTGAATTCAAGAACATATTTGGACATAATCATTCCTCCGTTGATACTTTTCATGATGATAGACAATTTTTTTCATAAATCAGGCAGCTGGCATTCCAAAGAAATATGCACCAACAATTGGCATTGCAGTTGATCATCGCCGTAGAAACCGCTCCTTGGAGAGTCTTCAAGCTAATGTGCAGAGGTTGAAGACTTACAAGGCCAAGGTGGTCGTCTTCCCACGACGTGCCCGCAAGTTCAAGGTAACTCTTCCTAGTTCCAACTGCCAAAGCAATACAATTCATTAGTTACTATGCCATCTTTTCTATTTGTGGGACTGCCTTGATCTCTGATCATTTACATATCTGTTGATGTAGGCTGGTGATTCTACTCCTGAGGAACTAGCAACTGCCACCCAGGTCCAGGGCTCTTACATGTCTATTGGACTAGAGAAGCCATCAGTTGAGCTTGTGAAGATCACAGAAGATATGAAATCTTTCAAGGCCTATGACAAACTTCGTGTTGAGCGAGCGAATGCCCGCCATGTCGGTGCTCGGTTGAAGAAGGCTGCTGAGGCAGAGAAGGAAGATAAGAAGTAAATGGTTCCAAGGTTTTAACTGTGCGCCCATATGTTTTGAATGAAAATTCAAGTTTGCTATAGTGTTCGGCATTTAAATTTAGTATCTTTTTTCCATGCTTTATATGTGCAAACCTGAGTTATGAGTTCAATTTTGAAATGATTAGAGATTTTTTTTATGCATATCGAACATACGCAGTTTTCGTAAATGTTGCCTCCTATGGTTTCATACATTTTTTTATATGGTTATTTTGTGACTTATACATGC

mRNA sequence

ATGAAGCACAACAATGTTATTCCTAGTGGGCACTTTAGGAAGCACTGGCAAAATTATGTTAGAACTTGGTTCAACCAACCTGCCAGGAAAACAAGGAGAAGGAATGCTCGTCAAGAAAAGGCTGTGAAAAATTTCCCTCGCCCTACTGCTGGACCACTTCGTCCTATTGTTCATGGACAAACATTGAAGTATAACATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTGGAAGAGTTGAAGGCAGCTGGCATTCCAAAGAAATATGCACCAACAATTGGCATTGCAGTTGATCATCGCCGTAGAAACCGCTCCTTGGAGAGTCTTCAAGCTAATGTGCAGAGGTTGAAGACTTACAAGGCCAAGGTGGTCGTCTTCCCACGACGTGCCCGCAAGTTCAAGGCTGGTGATTCTACTCCTGAGGAACTAGCAACTGCCACCCAGGTCCAGGGCTCTTACATGTCTATTGGACTAGAGAAGCCATCAGTTGAGCTTGTGAAGATCACAGAAGATATGAAATCTTTCAAGGCCTATGACAAACTTCGTGTTGAGCGAGCGAATGCCCGCCATGTCGGTGCTCGGTTGAAGAAGGCTGCTGAGGCAGAGAAGGAAGATAAGAAGTAA

Coding sequence (CDS)

ATGAAGCACAACAATGTTATTCCTAGTGGGCACTTTAGGAAGCACTGGCAAAATTATGTTAGAACTTGGTTCAACCAACCTGCCAGGAAAACAAGGAGAAGGAATGCTCGTCAAGAAAAGGCTGTGAAAAATTTCCCTCGCCCTACTGCTGGACCACTTCGTCCTATTGTTCATGGACAAACATTGAAGTATAACATGAAAGTGAGGGCTGGTAGAGGCTTCTCTTTGGAAGAGTTGAAGGCAGCTGGCATTCCAAAGAAATATGCACCAACAATTGGCATTGCAGTTGATCATCGCCGTAGAAACCGCTCCTTGGAGAGTCTTCAAGCTAATGTGCAGAGGTTGAAGACTTACAAGGCCAAGGTGGTCGTCTTCCCACGACGTGCCCGCAAGTTCAAGGCTGGTGATTCTACTCCTGAGGAACTAGCAACTGCCACCCAGGTCCAGGGCTCTTACATGTCTATTGGACTAGAGAAGCCATCAGTTGAGCTTGTGAAGATCACAGAAGATATGAAATCTTTCAAGGCCTATGACAAACTTCGTGTTGAGCGAGCGAATGCCCGCCATGTCGGTGCTCGGTTGAAGAAGGCTGCTGAGGCAGAGAAGGAAGATAAGAAGTAA

Protein sequence

MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKAKVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKLRVERANARHVGARLKKAAEAEKEDKK

Homology

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BLAST of Spg023040 vs. NCBI nr
Match: XP_004143667.1 (60S ribosomal protein L13-3 [Cucumis sativus] >KAA0055099.1 60S ribosomal protein L13-3-like [Cucumis melo var. makuwa] >KGN50340.1 hypothetical protein Csa_000560 [Cucumis sativus])

HSP 1 Score: 396.7 bits (1018), Expect = 1.2e-106
Identity = 203/206 (98.54%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQGSYM IGLEKPSVELVKITEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           RVERANARHVGARLKKAAEAEKE+KK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

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BLAST of Spg023040 vs. NCBI nr
Match: XP_008467320.1 (PREDICTED: 60S ribosomal protein L13-3-like [Cucumis melo])

HSP 1 Score: 396.4 bits (1017), Expect = 1.6e-106
Identity = 202/206 (98.06%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQGSYM IGLEKPSVELVK+TEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKVTEDMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           RVERANARHVGARLKKAAEAEKE+KK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

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BLAST of Spg023040 vs. NCBI nr
Match: XP_022929155.1 (60S ribosomal protein L13-3-like [Cucurbita moschata] >KAG6579642.1 hypothetical protein SDJN03_24090, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017097.1 hypothetical protein SDJN02_22209 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 395.6 bits (1015), Expect = 2.6e-106
Identity = 200/206 (97.09%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG YMSIGLEKPSVELVKITED+KSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           R+ER NARHVGARLK+AAEAEKE+KK
Sbjct: 181 RIERTNARHVGARLKRAAEAEKEEKK 206

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BLAST of Spg023040 vs. NCBI nr
Match: XP_023550831.1 (60S ribosomal protein L13-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 394.8 bits (1013), Expect = 4.5e-106
Identity = 199/206 (96.60%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG YMSIGLEKPSVELVKITED+KSFKAYDK+
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           R+ER NARHVGARLK+AAEAEKE+KK
Sbjct: 181 RIERTNARHVGARLKRAAEAEKEEKK 206

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BLAST of Spg023040 vs. NCBI nr
Match: XP_022969755.1 (60S ribosomal protein L13-3-like [Cucurbita maxima])

HSP 1 Score: 394.0 bits (1011), Expect = 7.7e-106
Identity = 199/206 (96.60%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRN RQEKAVKNFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNVRQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG YMSIGLEKPSVELVKITED+KSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           R+ER NARHVGARLK+AAEAEKE+KK
Sbjct: 181 RIERTNARHVGARLKRAAEAEKEEKK 206

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BLAST of Spg023040 vs. ExPASy Swiss-Prot
Match: P41127 (60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.0e-92
Identity = 167/206 (81.07%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELA ATQVQG Y+ I  EKP++ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           R+ER N RH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

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BLAST of Spg023040 vs. ExPASy Swiss-Prot
Match: Q9FF90 (60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 6.6e-92
Identity = 167/206 (81.07%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAG+GF+LEELK AGIPKK APTIGI+VDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+VVFPRR+R+ KAGDSTPEELA ATQVQG YM I   K ++ELVK+T D+K+FKAYDK+
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           R+ER NARH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNARHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Spg023040 vs. ExPASy Swiss-Prot
Match: P41128 (60S ribosomal protein L13-1 OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 2.8e-90
Identity = 165/206 (80.10%), Postives = 186/206 (90.29%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELK+AGIPKK APTIGIAVDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDST EELA ATQVQG YM I  EK + ELVK+T +MKS KA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           R+ER N RH GAR K+AA+AEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206

[Close]

BLAST of Spg023040 vs. ExPASy Swiss-Prot
Match: P41129 (60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 3.6e-90
Identity = 164/206 (79.61%), Postives = 186/206 (90.29%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGI++DHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDST EELA ATQVQG YM I  EK ++ELVK+T +MKS  AYDK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           R+ER N RH GAR K+AA+AEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206

[Close]

BLAST of Spg023040 vs. ExPASy Swiss-Prot
Match: Q9SMT4 (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13C PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.7e-79
Identity = 150/206 (72.82%), Postives = 171/206 (83.01%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+K W+NYV+T FNQPA KTRRR ARQ KAVK FPRPTAGP+RP+VH Q
Sbjct: 1   MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TL YNMKVRAG+GF+LEELKAAGIPKK APTIGI+VDH R+NRSLE  Q NVQRLKTYKA
Sbjct: 61  TLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPR AR  K GDS  +ELA ATQVQ  +M I  E P++ELVK+T DMK F AYDK+
Sbjct: 121 KLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           R+E  N RH G R K+AAEAEKE+KK
Sbjct: 181 RLEGINKRHAGVRAKRAAEAEKEEKK 206

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BLAST of Spg023040 vs. ExPASy TrEMBL
Match: A0A5A7UNR2 (60S ribosomal protein L13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00250 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 5.7e-107
Identity = 203/206 (98.54%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQGSYM IGLEKPSVELVKITEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           RVERANARHVGARLKKAAEAEKE+KK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of Spg023040 vs. ExPASy TrEMBL
Match: A0A0A0KKX2 (60S ribosomal protein L13 OS=Cucumis sativus OX=3659 GN=Csa_5G168780 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 5.7e-107
Identity = 203/206 (98.54%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQGSYM IGLEKPSVELVKITEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKITEDMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           RVERANARHVGARLKKAAEAEKE+KK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of Spg023040 vs. ExPASy TrEMBL
Match: A0A1S3CTG8 (60S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103504700 PE=3 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 7.5e-107
Identity = 202/206 (98.06%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVK FPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKAFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQGSYM IGLEKPSVELVK+TEDMKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMPIGLEKPSVELVKVTEDMKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           RVERANARHVGARLKKAAEAEKE+KK
Sbjct: 181 RVERANARHVGARLKKAAEAEKEEKK 206

[Close]

BLAST of Spg023040 vs. ExPASy TrEMBL
Match: A0A6J1ETG8 (60S ribosomal protein L13 OS=Cucurbita moschata OX=3662 GN=LOC111435822 PE=3 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.3e-106
Identity = 200/206 (97.09%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG YMSIGLEKPSVELVKITED+KSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           R+ER NARHVGARLK+AAEAEKE+KK
Sbjct: 181 RIERTNARHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of Spg023040 vs. ExPASy TrEMBL
Match: A0A6J1I0U7 (60S ribosomal protein L13 OS=Cucurbita maxima OX=3661 GN=LOC111468859 PE=3 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.7e-106
Identity = 199/206 (96.60%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRN RQEKAVKNFPRPTAGPLRPIVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNVRQEKAVKNFPRPTAGPLRPIVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           KVVVFPRRARKFKAGDSTPEELATATQVQG YMSIGLEKPSVELVKITED+KSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGPYMSIGLEKPSVELVKITEDLKSFKAYDKL 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           R+ER NARHVGARLK+AAEAEKE+KK
Sbjct: 181 RIERTNARHVGARLKRAAEAEKEEKK 206

[Close]

BLAST of Spg023040 vs. TAIR 10
Match: AT3G49010.1 (breast basic conserved 1 )

HSP 1 Score: 340.9 bits (873), Expect = 7.2e-94
Identity = 167/206 (81.07%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELA ATQVQG Y+ I  EKP++ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           R+ER N RH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Spg023040 vs. TAIR 10
Match: AT3G49010.2 (breast basic conserved 1 )

HSP 1 Score: 340.9 bits (873), Expect = 7.2e-94
Identity = 167/206 (81.07%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELA ATQVQG Y+ I  EKP++ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           R+ER N RH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Spg023040 vs. TAIR 10
Match: AT3G49010.3 (breast basic conserved 1 )

HSP 1 Score: 340.9 bits (873), Expect = 7.2e-94
Identity = 167/206 (81.07%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELA ATQVQG Y+ I  EKP++ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           R+ER N RH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Spg023040 vs. TAIR 10
Match: AT5G23900.1 (Ribosomal protein L13e family protein )

HSP 1 Score: 338.2 bits (866), Expect = 4.7e-93
Identity = 167/206 (81.07%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIPS HFRKHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAG+GF+LEELK AGIPKK APTIGI+VDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+VVFPRR+R+ KAGDSTPEELA ATQVQG YM I   K ++ELVK+T D+K+FKAYDK+
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           R+ER NARH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNARHAGARAKRAAEAEKEEKK 206

[Close]

BLAST of Spg023040 vs. TAIR 10
Match: AT3G49010.4 (breast basic conserved 1 )

HSP 1 Score: 334.7 bits (857), Expect = 5.2e-92
Identity = 166/206 (80.58%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPIVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRP+VHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKK APTIGIAVDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELATATQVQGSYMSIGLEKPSVELVKITEDMKSFKAYDKL 180
           K+V+FPRRAR  KAGDSTPEELA ATQVQG Y+ I  EKP++ELVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRAR--KAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RVERANARHVGARLKKAAEAEKEDKK 207
           R+ER N RH GAR K+AAEAEKE+KK
Sbjct: 181 RLERTNKRHAGARAKRAAEAEKEEKK 204

The following BLAST results are available for this feature:

BLAST of Spg023040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143667.1	1.2e-106	98.54	60S ribosomal protein L13-3 [Cucumis sativus] >KAA0055099.1 60S ribosomal protei...	[more]
XP_008467320.1	1.6e-106	98.06	PREDICTED: 60S ribosomal protein L13-3-like [Cucumis melo]	[more]
XP_022929155.1	2.6e-106	97.09	60S ribosomal protein L13-3-like [Cucurbita moschata] >KAG6579642.1 hypothetical...	[more]
XP_023550831.1	4.5e-106	96.60	60S ribosomal protein L13-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022969755.1	7.7e-106	96.60	60S ribosomal protein L13-3-like [Cucurbita maxima]	[more]

BLAST of Spg023040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41127	1.0e-92	81.07	60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1	[more]
Q9FF90	6.6e-92	81.07	60S ribosomal protein L13-3 OS=Arabidopsis thaliana OX=3702 GN=RPL13D PE=1 SV=1	[more]
P41128	2.8e-90	80.10	60S ribosomal protein L13-1 OS=Brassica napus OX=3708 PE=2 SV=1	[more]
P41129	3.6e-90	79.61	60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1	[more]
Q9SMT4	1.7e-79	72.82	Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana OX=3702 GN=RPL13C P...	[more]

BLAST of Spg023040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UNR2	5.7e-107	98.54	60S ribosomal protein L13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A0A0KKX2	5.7e-107	98.54	60S ribosomal protein L13 OS=Cucumis sativus OX=3659 GN=Csa_5G168780 PE=3 SV=1	[more]
A0A1S3CTG8	7.5e-107	98.06	60S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103504700 PE=3 SV=1	[more]
A0A6J1ETG8	1.3e-106	97.09	60S ribosomal protein L13 OS=Cucurbita moschata OX=3662 GN=LOC111435822 PE=3 SV=...	[more]
A0A6J1I0U7	3.7e-106	96.60	60S ribosomal protein L13 OS=Cucurbita maxima OX=3661 GN=LOC111468859 PE=3 SV=1	[more]

BLAST of Spg023040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49010.1	7.2e-94	81.07	breast basic conserved 1	[more]
AT3G49010.2	7.2e-94	81.07	breast basic conserved 1	[more]
AT3G49010.3	7.2e-94	81.07	breast basic conserved 1	[more]
AT5G23900.1	4.7e-93	81.07	Ribosomal protein L13e family protein	[more]
AT3G49010.4	5.2e-92	80.58	breast basic conserved 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001380	Ribosomal protein L13e	PFAM	PF01294	Ribosomal_L13e	coord: 6..185 e-value: 1.2E-77 score: 259.8
IPR001380	Ribosomal protein L13e	PANTHER	PTHR11722	60S RIBOSOMAL PROTEIN L13	coord: 2..206
IPR001380	Ribosomal protein L13e	HAMAP	MF_00499	Ribosomal_L13e	coord: 44..127 score: 21.640017
None	No IPR available	GENE3D	1.20.5.110		coord: 166..206 e-value: 9.7E-15 score: 56.3
None	No IPR available	PANTHER	PTHR11722:SF11	60S RIBOSOMAL PROTEIN L13	coord: 2..206
IPR018256	Ribosomal protein L13e, conserved site	PROSITE	PS01104	RIBOSOMAL_L13E	coord: 69..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg023040.1	Spg023040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome