Spg022771 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg022771
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	scaffold2: 6062212 .. 6062574 (+)
RNA-Seq Expression	Spg022771
Synteny	Spg022771

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAATAGGCGGTGGAGGAGAATTATTGTTGCAATTTACGGCACTGAGACAAATGGTTGGCTTCCTAAACAAACCAGGGGGGGTTGCTGGAGGAAGGCCATGGGTGGATATTGACAAAAACAGAGATCTTTTCCTTGAGCTAGTGAAGTTCAAAGTGGGCAGAGGCTCAAAAATTCAGTTCTGGGAAGACGCCTGGGCCACAGATGTTTGCTCCACACAAGTACCCTTATCTTTATGCCTTATTTTCAAAAAAGGAGGCTTTGGTTTCAGATTGCCTGTCGGTTTCTGCAAATGCTTGGGATTTGGGGTTAAAGAGGCACCTTTGATAGAGAGCTTCCTAGATGGACCGGTTTTATAG

mRNA sequence

ATGAAGAAAATAGGCGGTGGAGGAGAATTATTGTTGCAATTTACGGCACTGAGACAAATGGTTGGCTTCCTAAACAAACCAGGGGGGGTTGCTGGAGGAAGGCCATGGGTGGATATTGACAAAAACAGAGATCTTTTCCTTGAGCTAGTGAAGTTCAAAGTGGGCAGAGGCTCAAAAATTCAGTTCTGGGAAGACGCCTGGGCCACAGATGTTTGCTCCACACAAGTACCCTTATCTTTATGCCTTATTTTCAAAAAAGGAGGCTTTGGTTTCAGATTGCCTGTCGGTTTCTGCAAATGCTTGGGATTTGGGGTTAAAGAGGCACCTTTGATAGAGAGCTTCCTAGATGGACCGGTTTTATAG

Coding sequence (CDS)

ATGAAGAAAATAGGCGGTGGAGGAGAATTATTGTTGCAATTTACGGCACTGAGACAAATGGTTGGCTTCCTAAACAAACCAGGGGGGGTTGCTGGAGGAAGGCCATGGGTGGATATTGACAAAAACAGAGATCTTTTCCTTGAGCTAGTGAAGTTCAAAGTGGGCAGAGGCTCAAAAATTCAGTTCTGGGAAGACGCCTGGGCCACAGATGTTTGCTCCACACAAGTACCCTTATCTTTATGCCTTATTTTCAAAAAAGGAGGCTTTGGTTTCAGATTGCCTGTCGGTTTCTGCAAATGCTTGGGATTTGGGGTTAAAGAGGCACCTTTGATAGAGAGCTTCCTAGATGGACCGGTTTTATAG

Protein sequence

MKKIGGGGELLLQFTALRQMVGFLNKPGGVAGGRPWVDIDKNRDLFLELVKFKVGRGSKIQFWEDAWATDVCSTQVPLSLCLIFKKGGFGFRLPVGFCKCLGFGVKEAPLIESFLDGPVL

Homology

[Close]

BLAST of Spg022771 vs. NCBI nr
Match: XP_022158566.1 (uncharacterized protein LOC111025019 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-05
Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 22  GFLNK-PGGVAGGRPWVDIDKNRDLFLELVKFKVGRGSKIQFWEDAWA 69
           G+L K P G A GRPW DI KN   F E+V FK  +G ++ FW D WA
Sbjct: 274 GWLTKAPKGKAKGRPWFDIAKNLSAFQEMVVFKANQGDRLSFWMDKWA 321

[Close]

BLAST of Spg022771 vs. NCBI nr
Match: RVW41121.1 (hypothetical protein CK203_069690 [Vitis vinifera])

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-04
Identity = 27/56 (48.21%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 26  KPGGVAGGRPWVDIDKNRDLFLELVKFKVGRGSKIQFWEDAWATDVCSTQVPLSLC 82
           K  G AG R W +I K  D   E + F VG+GSKI+FW+D W TD      PLS C
Sbjct: 89  KVSGAAGVRVWKEIMKESDWCWENLSFLVGKGSKIKFWKDRWCTD-----TPLSQC 139

[Close]

BLAST of Spg022771 vs. NCBI nr
Match: CAN73460.1 (hypothetical protein VITISV_033905 [Vitis vinifera])

HSP 1 Score: 55.5 bits (132), Expect = 3.8e-04
Identity = 26/56 (46.43%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 26  KPGGVAGGRPWVDIDKNRDLFLELVKFKVGRGSKIQFWEDAWATDVCSTQVPLSLC 82
           K  G AG   W +I K  D   E + F VG+GSKI+FW+D W TD     +PLS C
Sbjct: 254 KVRGAAGAGVWKEIMKESDWCWENLAFVVGKGSKIKFWKDRWCTD-----IPLSQC 304

[Close]

BLAST of Spg022771 vs. NCBI nr
Match: CAN70311.1 (hypothetical protein VITISV_022886 [Vitis vinifera])

HSP 1 Score: 55.1 bits (131), Expect = 4.9e-04
Identity = 26/56 (46.43%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 26   KPGGVAGGRPWVDIDKNRDLFLELVKFKVGRGSKIQFWEDAWATDVCSTQVPLSLC 82
            K  G AG   W +I K  D   E + F VG+GSKI+FW+D W TD     +PLS C
Sbjct: 1769 KVSGAAGVXVWKEIMKESDWCWENLAFIVGKGSKIKFWKDRWCTD-----IPLSQC 1819

[Close]

BLAST of Spg022771 vs. NCBI nr
Match: RVX13534.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 54.7 bits (130), Expect = 6.4e-04
Identity = 26/56 (46.43%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 26  KPGGVAGGRPWVDIDKNRDLFLELVKFKVGRGSKIQFWEDAWATDVCSTQVPLSLC 82
           K  G AG   W +I K  D   E + F VG+GSKI+FW+D W TD     +PLS C
Sbjct: 875 KVSGAAGVGVWKEIMKESDWCWENLAFIVGKGSKIKFWKDRWCTD-----IPLSQC 925

[Close]

BLAST of Spg022771 vs. ExPASy TrEMBL
Match: A0A6J1E196 (uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025019 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.8e-05
Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 22  GFLNK-PGGVAGGRPWVDIDKNRDLFLELVKFKVGRGSKIQFWEDAWA 69
           G+L K P G A GRPW DI KN   F E+V FK  +G ++ FW D WA
Sbjct: 274 GWLTKAPKGKAKGRPWFDIAKNLSAFQEMVVFKANQGDRLSFWMDKWA 321

[Close]

BLAST of Spg022771 vs. ExPASy TrEMBL
Match: A0A2N9IM54 (Non-specific serine/threonine protein kinase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53236 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-05
Identity = 27/70 (38.57%), Postives = 37/70 (52.86%), Query Frame = 0


Query: 1    MKKIGGGGELLLQFTALRQMVGFLNKPGGVAGGRPWVDIDKNRDLFLELVKFKVGRGSKI 60
            +K +  G E LLQ T    +VG  ++ GG  G   W  I       LE ++F VGRG +I
Sbjct: 1231 LKNLIYGEESLLQNTVRNGVVGSPSRIGGAHGCGLWKSISMGWGTLLEQIRFSVGRGDRI 1290

Query: 61   QFWEDAWATD 71
            +FW+D W  D
Sbjct: 1291 RFWKDKWCGD 1300

[Close]

BLAST of Spg022771 vs. ExPASy TrEMBL
Match: A0A2N9FB74 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12260 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.7e-05
Identity = 27/70 (38.57%), Postives = 37/70 (52.86%), Query Frame = 0


Query: 1    MKKIGGGGELLLQFTALRQMVGFLNKPGGVAGGRPWVDIDKNRDLFLELVKFKVGRGSKI 60
            +K +  G E LLQ T    +VG  ++ GG  G   W  I       LE ++F VGRG +I
Sbjct: 1257 LKNLIYGEESLLQNTVRNGVVGSPSRIGGAHGCGLWKSISMGWGTLLEQIRFSVGRGDRI 1316

Query: 61   QFWEDAWATD 71
            +FW+D W  D
Sbjct: 1317 RFWKDKWCGD 1326

[Close]

BLAST of Spg022771 vs. ExPASy TrEMBL
Match: A0A438E023 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_069690 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.3e-05
Identity = 27/56 (48.21%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 26  KPGGVAGGRPWVDIDKNRDLFLELVKFKVGRGSKIQFWEDAWATDVCSTQVPLSLC 82
           K  G AG R W +I K  D   E + F VG+GSKI+FW+D W TD      PLS C
Sbjct: 89  KVSGAAGVRVWKEIMKESDWCWENLSFLVGKGSKIKFWKDRWCTD-----TPLSQC 139

[Close]

BLAST of Spg022771 vs. ExPASy TrEMBL
Match: A5AJ71 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_033905 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-04
Identity = 26/56 (46.43%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 26  KPGGVAGGRPWVDIDKNRDLFLELVKFKVGRGSKIQFWEDAWATDVCSTQVPLSLC 82
           K  G AG   W +I K  D   E + F VG+GSKI+FW+D W TD     +PLS C
Sbjct: 254 KVRGAAGAGVWKEIMKESDWCWENLAFVVGKGSKIKFWKDRWCTD-----IPLSQC 304

The following BLAST results are available for this feature:

BLAST of Spg022771 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158566.1	5.8e-05	52.08	uncharacterized protein LOC111025019 [Momordica charantia]	[more]
RVW41121.1	1.3e-04	48.21	hypothetical protein CK203_069690 [Vitis vinifera]	[more]
CAN73460.1	3.8e-04	46.43	hypothetical protein VITISV_033905 [Vitis vinifera]	[more]
CAN70311.1	4.9e-04	46.43	hypothetical protein VITISV_022886 [Vitis vinifera]	[more]
RVX13534.1	6.4e-04	46.43	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]

BLAST of Spg022771 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg022771 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E196	2.8e-05	52.08	uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A2N9IM54	3.7e-05	38.57	Non-specific serine/threonine protein kinase OS=Fagus sylvatica OX=28930 GN=FSB_...	[more]
A0A2N9FB74	3.7e-05	38.57	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12260 PE=4 SV=1	[more]
A0A438E023	6.3e-05	48.21	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_069690 PE=4 SV=1	[more]
A5AJ71	1.8e-04	46.43	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_033905 PE=4 SV=1	[more]

BLAST of Spg022771 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg022771.1	Spg022771.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050896	response to stimulus
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003824	catalytic activity