Spg020967 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg020967
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNA polymerase II C-terminal domain phosphatase-like
Location	scaffold9: 3467185 .. 3468666 (-)
RNA-Seq Expression	Spg020967
Synteny	Spg020967

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTACTCACTCTCTCCTTTGGGGTCTTTAGAAAGAGTAGGGTGTTCGAAGATAAGTGCTCTTCTTTTGAAATCTTTTGGCCTATGGTCCAACATATTGCCTCTTGATGGTGTACAAATCACGTTTAATTCTTTTGTAATTATAGTCTTTTAATGATTATTAACCATTGAAAAGCTATTTGTTAGTTTTGTGGGGAGGGGTTCTCTCTACCTTTGTCCTTAGACCTTTGGTTCTCCTCGTTTGGTTGCCTCAATGAAATATAGGTTTTTGTTTCTTATATAAAAAAAAATTCTTGAAATTTAATAGGATTCTCAACTTTTCAATAATTTTTTGAAATTTTAATTTTCCATCTAAAGAGTCATTGACTTGTTTGACATTTTCAAAATTTGTGGTTTTTAGGCCCTATTAGACAATTCAATTTTATGTCTAATAGAATCAATTAATTTAAAAAAATATCAAATATATCAAAAAACTATCTGACATAAAATTTGATGTGCTTGAAATTTTCTTCAACATTTTTCTGCAGAGATAATCTTCACATAACTAGGAAATTCAGTATCATGAATGGTTTTACATTTATATCAGGGAATATTTTAATTGTTAATCTGAGTATAGCTCGGTGGATAAGGCATTAATTACGATCCTAAAGATTGATGGTTCAATCCCCATCTCTATAATTGTTGAACGTGAAAAAAAAATAATAATTCCCTTCAATTCAACAGGTATTAAAGACAATTCGGAGCAAAGTTCTGGTGGGATGCAAGGTGGTCTTCAGTCGAGTCTTTCCTACCAAATTTCAGGCTGAAAACCATCATCTCTGGAAGATGGTCGAGCAGTTGGGAGGCACTTGCTCAACCGAACTCGACCCATCTGTGACACACGTGGTCTCAACGGATTCTGGAACGGAGAAGTCTCGTTGGGCAGTGAAAGAGCAGAAGTTTCTGGTCAATCCACAGTGGATAGAAGCATCAAACTACTTCTGGAAACGGCAAGCGGAAGAGAACTTCCCTATGGAGCAAACCAAGAAACAATGACACAGTTTCTCTTAAATGGAGCTTGCATTTGTTGGGGGTTTACTTGCTGTGCCGTTAGTGCTTTTGTTCCCTATCCTTTATGGATTCTACCTTCTTTTTAGGTCAGCATCTAATTTTTGAAGTATCCCCCTAAAATCAACTTCAAGGGTTGATTGAAATTTGAAAGTCAAGCTTTGGTTTGTGTAGATGTTTAGGTGCATCGTGTTGTAATTTTGTCTAACCATTTTGAGTTATGGTTATAATTGTAGGGATGTAATTTCTGAGTTCGGCTTGTGATTCTTTTAAAAAAATTCAAGCCCAAACAACTACGGTTCTGTGTTTGTAATTCGTCTGATGTATTTGTCTCAGAACTGATATAGCAATGGGTGTAGTTGAAAGTTTCATGAAGGAATATACTAGAACTAGAACAATTGAAAAATAGAATTATATTTTTAGAAATAACGTG

mRNA sequence

ATGTGCTACTCACTCTCTCCTTTGGGGTCTTTAGAAAGAGTAGGGTGTTCGAAGATAAGTGCTCTTCTTTTGAAATCTTTTGGCCTATGGTCCAACATATTGCCTCTTGATGGTGTACAAATCACGTTTAATTCTTTTGTATTAAAGACAATTCGGAGCAAAGTTCTGGTGGGATGCAAGGTGGTCTTCAGTCGAGTCTTTCCTACCAAATTTCAGGCTGAAAACCATCATCTCTGGAAGATGGTCGAGCAGTTGGGAGGCACTTGCTCAACCGAACTCGACCCATCTGTGACACACGTGGTCTCAACGGATTCTGGAACGGAGAAGTCTCGTTGGGCAGTGAAAGAGCAGAAGTTTCTGGTCAATCCACAGTGGATAGAAGCATCAAACTACTTCTGGAAACGGCAAGCGGAAGAGAACTTCCCTATGGAGCAAACCAAGAAACAATGA

Coding sequence (CDS)

ATGTGCTACTCACTCTCTCCTTTGGGGTCTTTAGAAAGAGTAGGGTGTTCGAAGATAAGTGCTCTTCTTTTGAAATCTTTTGGCCTATGGTCCAACATATTGCCTCTTGATGGTGTACAAATCACGTTTAATTCTTTTGTATTAAAGACAATTCGGAGCAAAGTTCTGGTGGGATGCAAGGTGGTCTTCAGTCGAGTCTTTCCTACCAAATTTCAGGCTGAAAACCATCATCTCTGGAAGATGGTCGAGCAGTTGGGAGGCACTTGCTCAACCGAACTCGACCCATCTGTGACACACGTGGTCTCAACGGATTCTGGAACGGAGAAGTCTCGTTGGGCAGTGAAAGAGCAGAAGTTTCTGGTCAATCCACAGTGGATAGAAGCATCAAACTACTTCTGGAAACGGCAAGCGGAAGAGAACTTCCCTATGGAGCAAACCAAGAAACAATGA

Protein sequence

MCYSLSPLGSLERVGCSKISALLLKSFGLWSNILPLDGVQITFNSFVLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ

Homology

[Close]

BLAST of Spg020967 vs. NCBI nr
Match: XP_022973448.1 (RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita maxima])

HSP 1 Score: 201.1 bits (510), Expect = 6.9e-48
Identity = 106/151 (70.20%), Postives = 119/151 (78.81%), Query Frame = 0


Query: 2   CYSLSPLGSLERVGCSKISALL--LKS-FGLWSNILPLDGVQITFNSFVLKTIRSKVLVG 61
           C SLS L S E      ++ +L  LK    ++ N L  D V       VLKT+RSKVL G
Sbjct: 298 CKSLSELKSDESESDGALATILKVLKQVHNIFFNELSEDLVDRDVRQ-VLKTVRSKVLEG 357

Query: 62  CKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQK 121
           CKVVFSRVFPTKFQA+NHHLWKMVEQLGGTCSTELDPSVTH+VSTD+GTEKSRWA+KEQK
Sbjct: 358 CKVVFSRVFPTKFQADNHHLWKMVEQLGGTCSTELDPSVTHIVSTDAGTEKSRWAIKEQK 417

Query: 122 FLVNPQWIEASNYFWKRQAEENFPMEQTKKQ 150
           FLV+PQWIEASNYFWKR+AEE FP+E TKKQ
Sbjct: 418 FLVHPQWIEASNYFWKREAEEKFPVEHTKKQ 447

[Close]

BLAST of Spg020967 vs. NCBI nr
Match: XP_022141754.1 (RNA polymerase II C-terminal domain phosphatase-like 4 [Momordica charantia] >XP_022141755.1 RNA polymerase II C-terminal domain phosphatase-like 4 [Momordica charantia])

HSP 1 Score: 198.7 bits (504), Expect = 3.4e-47
Identity = 92/103 (89.32%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 47  VLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSG 106
           VLKT+RSKVL GCKVVF+RVFP KFQA+NHHLWKMVEQLGG+CST+LDPSVTHVVSTD+G
Sbjct: 348 VLKTVRSKVLEGCKVVFTRVFPAKFQADNHHLWKMVEQLGGSCSTDLDPSVTHVVSTDAG 407

Query: 107 TEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ 150
           TEKSRWAVKEQKFLV+P+WIEASNYFWKRQAEENFP+EQTKKQ
Sbjct: 408 TEKSRWAVKEQKFLVHPRWIEASNYFWKRQAEENFPVEQTKKQ 450

[Close]

BLAST of Spg020967 vs. NCBI nr
Match: XP_022925489.1 (RNA polymerase II C-terminal domain phosphatase-like 4 isoform X2 [Cucurbita moschata])

HSP 1 Score: 197.2 bits (500), Expect = 1.0e-46
Identity = 105/151 (69.54%), Postives = 118/151 (78.15%), Query Frame = 0


Query: 2   CYSLSPLGSLERV---GCSKISALLLKSFGLWSNILPLDGVQITFNSFVLKTIRSKVLVG 61
           C SLS L S E       + I  +L +   ++ N L  D V       VLKT+RSKVL G
Sbjct: 208 CKSLSELKSDESETDGALATILKVLKQVHNIFFNELSDDLVDRDVRQ-VLKTVRSKVLEG 267

Query: 62  CKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQK 121
           CKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELD SVTHVVSTD GTEKSRWA+KE+K
Sbjct: 268 CKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDSSVTHVVSTDPGTEKSRWALKEEK 327

Query: 122 FLVNPQWIEASNYFWKRQAEENFPMEQTKKQ 150
           FLV+P+WIEASNYFWKRQAE+NFP+EQ+KKQ
Sbjct: 328 FLVHPRWIEASNYFWKRQAEDNFPVEQSKKQ 357

[Close]

BLAST of Spg020967 vs. NCBI nr
Match: XP_022925487.1 (RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Cucurbita moschata] >XP_022925488.1 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Cucurbita moschata])

HSP 1 Score: 197.2 bits (500), Expect = 1.0e-46
Identity = 105/151 (69.54%), Postives = 118/151 (78.15%), Query Frame = 0


Query: 2   CYSLSPLGSLERV---GCSKISALLLKSFGLWSNILPLDGVQITFNSFVLKTIRSKVLVG 61
           C SLS L S E       + I  +L +   ++ N L  D V       VLKT+RSKVL G
Sbjct: 298 CKSLSELKSDESETDGALATILKVLKQVHNIFFNELSDDLVDRDVRQ-VLKTVRSKVLEG 357

Query: 62  CKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQK 121
           CKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELD SVTHVVSTD GTEKSRWA+KE+K
Sbjct: 358 CKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDSSVTHVVSTDPGTEKSRWALKEEK 417

Query: 122 FLVNPQWIEASNYFWKRQAEENFPMEQTKKQ 150
           FLV+P+WIEASNYFWKRQAE+NFP+EQ+KKQ
Sbjct: 418 FLVHPRWIEASNYFWKRQAEDNFPVEQSKKQ 447

[Close]

BLAST of Spg020967 vs. NCBI nr
Match: KAG6607512.1 (RNA polymerase II C-terminal domain phosphatase-like 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.8 bits (499), Expect = 1.3e-46
Identity = 104/151 (68.87%), Postives = 117/151 (77.48%), Query Frame = 0


Query: 2   CYSLSPLGSLERV---GCSKISALLLKSFGLWSNILPLDGVQITFNSFVLKTIRSKVLVG 61
           C SLS L S E       + I  +L +   ++ N L  D V       VLKT+RSKVL G
Sbjct: 580 CKSLSELKSDESETDGALATILKVLKQVHNIFFNELSEDLVDRDVRQ-VLKTVRSKVLEG 639

Query: 62  CKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQK 121
           CKVVFSRVFPTKFQA+NHHLWKMVEQLGGTCSTELDPSVTH+VSTD+GTEKSRWA+KEQK
Sbjct: 640 CKVVFSRVFPTKFQADNHHLWKMVEQLGGTCSTELDPSVTHIVSTDAGTEKSRWAIKEQK 699

Query: 122 FLVNPQWIEASNYFWKRQAEENFPMEQTKKQ 150
           FLV+PQWIEASNYFWKR+AEE F +E TKKQ
Sbjct: 700 FLVHPQWIEASNYFWKREAEEKFLVEHTKKQ 729

[Close]

BLAST of Spg020967 vs. ExPASy Swiss-Prot
Match: Q00IB6 (RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana OX=3702 GN=CPL4 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.7e-34
Identity = 64/103 (62.14%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 47  VLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSG 106
           +LK +R ++L GCK+VFSRVFPTK + E+H LWKM E+LG TC+TE+D SVTHVV+ D G
Sbjct: 333 MLKQVRKEILKGCKIVFSRVFPTKAKPEDHPLWKMAEELGATCATEVDASVTHVVAMDVG 392

Query: 107 TEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ 150
           TEK+RWAV+E+K++V+  WI+A+NY W +Q EENF +EQ KKQ
Sbjct: 393 TEKARWAVREKKYVVHRGWIDAANYLWMKQPEENFGLEQLKKQ 435

[Close]

BLAST of Spg020967 vs. ExPASy Swiss-Prot
Match: Q8LL04 (RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana OX=3702 GN=CPL3 PE=1 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 6.6e-17
Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 47   VLKTIRSKVLVGCKVVFSRVFPT-KFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDS 106
            +L + + K+L GC++VFSR+ P  + +   H LW+  EQ G  C+T++D  VTHVV+   
Sbjct: 1142 ILASEQRKILAGCRIVFSRIIPVGEAKPHLHPLWQTAEQFGAVCTTQVDEHVTHVVTNSL 1201

Query: 107  GTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEEN 141
            GT+K  WA+   +F+V+P W+EAS + ++R A EN
Sbjct: 1202 GTDKVNWALTRGRFVVHPGWVEASAFLYQR-ANEN 1235

[Close]

BLAST of Spg020967 vs. ExPASy TrEMBL
Match: A0A6J1ID30 (RNA polymerase II C-terminal domain phosphatase-like OS=Cucurbita maxima OX=3661 GN=LOC111471991 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.3e-48
Identity = 106/151 (70.20%), Postives = 119/151 (78.81%), Query Frame = 0


Query: 2   CYSLSPLGSLERVGCSKISALL--LKS-FGLWSNILPLDGVQITFNSFVLKTIRSKVLVG 61
           C SLS L S E      ++ +L  LK    ++ N L  D V       VLKT+RSKVL G
Sbjct: 298 CKSLSELKSDESESDGALATILKVLKQVHNIFFNELSEDLVDRDVRQ-VLKTVRSKVLEG 357

Query: 62  CKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQK 121
           CKVVFSRVFPTKFQA+NHHLWKMVEQLGGTCSTELDPSVTH+VSTD+GTEKSRWA+KEQK
Sbjct: 358 CKVVFSRVFPTKFQADNHHLWKMVEQLGGTCSTELDPSVTHIVSTDAGTEKSRWAIKEQK 417

Query: 122 FLVNPQWIEASNYFWKRQAEENFPMEQTKKQ 150
           FLV+PQWIEASNYFWKR+AEE FP+E TKKQ
Sbjct: 418 FLVHPQWIEASNYFWKREAEEKFPVEHTKKQ 447

[Close]

BLAST of Spg020967 vs. ExPASy TrEMBL
Match: A0A6J1CJQ5 (RNA polymerase II C-terminal domain phosphatase-like OS=Momordica charantia OX=3673 GN=LOC111012040 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.7e-47
Identity = 92/103 (89.32%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 47  VLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSG 106
           VLKT+RSKVL GCKVVF+RVFP KFQA+NHHLWKMVEQLGG+CST+LDPSVTHVVSTD+G
Sbjct: 348 VLKTVRSKVLEGCKVVFTRVFPAKFQADNHHLWKMVEQLGGSCSTDLDPSVTHVVSTDAG 407

Query: 107 TEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ 150
           TEKSRWAVKEQKFLV+P+WIEASNYFWKRQAEENFP+EQTKKQ
Sbjct: 408 TEKSRWAVKEQKFLVHPRWIEASNYFWKRQAEENFPVEQTKKQ 450

[Close]

BLAST of Spg020967 vs. ExPASy TrEMBL
Match: A0A6J1EFC1 (RNA polymerase II C-terminal domain phosphatase-like OS=Cucurbita moschata OX=3662 GN=LOC111432775 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.8e-47
Identity = 105/151 (69.54%), Postives = 118/151 (78.15%), Query Frame = 0


Query: 2   CYSLSPLGSLERV---GCSKISALLLKSFGLWSNILPLDGVQITFNSFVLKTIRSKVLVG 61
           C SLS L S E       + I  +L +   ++ N L  D V       VLKT+RSKVL G
Sbjct: 298 CKSLSELKSDESETDGALATILKVLKQVHNIFFNELSDDLVDRDVRQ-VLKTVRSKVLEG 357

Query: 62  CKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQK 121
           CKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELD SVTHVVSTD GTEKSRWA+KE+K
Sbjct: 358 CKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDSSVTHVVSTDPGTEKSRWALKEEK 417

Query: 122 FLVNPQWIEASNYFWKRQAEENFPMEQTKKQ 150
           FLV+P+WIEASNYFWKRQAE+NFP+EQ+KKQ
Sbjct: 418 FLVHPRWIEASNYFWKRQAEDNFPVEQSKKQ 447

[Close]

BLAST of Spg020967 vs. ExPASy TrEMBL
Match: A0A6J1ECB6 (RNA polymerase II C-terminal domain phosphatase-like OS=Cucurbita moschata OX=3662 GN=LOC111432775 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.8e-47
Identity = 105/151 (69.54%), Postives = 118/151 (78.15%), Query Frame = 0


Query: 2   CYSLSPLGSLERV---GCSKISALLLKSFGLWSNILPLDGVQITFNSFVLKTIRSKVLVG 61
           C SLS L S E       + I  +L +   ++ N L  D V       VLKT+RSKVL G
Sbjct: 208 CKSLSELKSDESETDGALATILKVLKQVHNIFFNELSDDLVDRDVRQ-VLKTVRSKVLEG 267

Query: 62  CKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQK 121
           CKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELD SVTHVVSTD GTEKSRWA+KE+K
Sbjct: 268 CKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDSSVTHVVSTDPGTEKSRWALKEEK 327

Query: 122 FLVNPQWIEASNYFWKRQAEENFPMEQTKKQ 150
           FLV+P+WIEASNYFWKRQAE+NFP+EQ+KKQ
Sbjct: 328 FLVHPRWIEASNYFWKRQAEDNFPVEQSKKQ 357

[Close]

BLAST of Spg020967 vs. ExPASy TrEMBL
Match: A0A6J1BV42 (RNA polymerase II C-terminal domain phosphatase-like OS=Momordica charantia OX=3673 GN=LOC111005808 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.3e-46
Identity = 90/103 (87.38%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 47  VLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSG 106
           VLKT+RSKVL GCKVVF+RVFPTKF A+NHHLWKMVEQLGG+CST+LD SVTHVVSTD+G
Sbjct: 348 VLKTVRSKVLEGCKVVFTRVFPTKFPADNHHLWKMVEQLGGSCSTDLDSSVTHVVSTDAG 407

Query: 107 TEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ 150
           TEKSRWAVKEQKFLV+P+WIEASNYFWKRQ EENFP+EQTKKQ
Sbjct: 408 TEKSRWAVKEQKFLVHPRWIEASNYFWKRQVEENFPVEQTKKQ 450

[Close]

BLAST of Spg020967 vs. TAIR 10
Match: AT5G58003.1 (C-terminal domain phosphatase-like 4 )

HSP 1 Score: 144.8 bits (364), Expect = 5.5e-35
Identity = 64/103 (62.14%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 47  VLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSG 106
           +LK +R ++L GCK+VFSRVFPTK + E+H LWKM E+LG TC+TE+D SVTHVV+ D G
Sbjct: 333 MLKQVRKEILKGCKIVFSRVFPTKAKPEDHPLWKMAEELGATCATEVDASVTHVVAMDVG 392

Query: 107 TEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ 150
           TEK+RWAV+E+K++V+  WI+A+NY W +Q EENF +EQ KKQ
Sbjct: 393 TEKARWAVREKKYVVHRGWIDAANYLWMKQPEENFGLEQLKKQ 435

[Close]

BLAST of Spg020967 vs. TAIR 10
Match: AT2G33540.1 (C-terminal domain phosphatase-like 3 )

HSP 1 Score: 88.6 bits (218), Expect = 4.7e-18
Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 47   VLKTIRSKVLVGCKVVFSRVFPT-KFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDS 106
            +L + + K+L GC++VFSR+ P  + +   H LW+  EQ G  C+T++D  VTHVV+   
Sbjct: 1142 ILASEQRKILAGCRIVFSRIIPVGEAKPHLHPLWQTAEQFGAVCTTQVDEHVTHVVTNSL 1201

Query: 107  GTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEEN 141
            GT+K  WA+   +F+V+P W+EAS + ++R A EN
Sbjct: 1202 GTDKVNWALTRGRFVVHPGWVEASAFLYQR-ANEN 1235

The following BLAST results are available for this feature:

BLAST of Spg020967 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973448.1	6.9e-48	70.20	RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita maxima]	[more]
XP_022141754.1	3.4e-47	89.32	RNA polymerase II C-terminal domain phosphatase-like 4 [Momordica charantia] >XP...	[more]
XP_022925489.1	1.0e-46	69.54	RNA polymerase II C-terminal domain phosphatase-like 4 isoform X2 [Cucurbita mos...	[more]
XP_022925487.1	1.0e-46	69.54	RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Cucurbita mos...	[more]
KAG6607512.1	1.3e-46	68.87	RNA polymerase II C-terminal domain phosphatase-like 4, partial [Cucurbita argyr...	[more]

BLAST of Spg020967 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00IB6	7.7e-34	62.14	RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana O...	[more]
Q8LL04	6.6e-17	42.11	RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana O...	[more]

BLAST of Spg020967 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ID30	3.3e-48	70.20	RNA polymerase II C-terminal domain phosphatase-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1CJQ5	1.7e-47	89.32	RNA polymerase II C-terminal domain phosphatase-like OS=Momordica charantia OX=3...	[more]
A0A6J1EFC1	4.8e-47	69.54	RNA polymerase II C-terminal domain phosphatase-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1ECB6	4.8e-47	69.54	RNA polymerase II C-terminal domain phosphatase-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1BV42	5.3e-46	87.38	RNA polymerase II C-terminal domain phosphatase-like OS=Momordica charantia OX=3...	[more]

BLAST of Spg020967 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58003.1	5.5e-35	62.14	C-terminal domain phosphatase-like 4	[more]
AT2G33540.1	4.7e-18	42.11	C-terminal domain phosphatase-like 3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001357	BRCT domain	SMART	SM00292	BRCT_7	coord: 53..133 e-value: 1.1E-5 score: 34.9
IPR001357	BRCT domain	PFAM	PF12738	PTCB-BRCT	coord: 74..125 e-value: 1.3E-9 score: 37.8
IPR001357	BRCT domain	PROSITE	PS50172	BRCT	coord: 51..143 score: 12.67192
IPR036420	BRCT domain superfamily	GENE3D	3.40.50.10190	BRCT domain	coord: 55..143 e-value: 9.0E-25 score: 88.8
IPR036420	BRCT domain superfamily	SUPERFAMILY	52113	BRCT domain	coord: 53..143
None	No IPR available	PANTHER	PTHR23081:SF28	BNAC03G12630D PROTEIN	coord: 47..145
None	No IPR available	CDD	cd17729	BRCT_CTDP1	coord: 47..138 e-value: 1.25934E-36 score: 119.56
IPR039189	CTD phosphatase Fcp1	PANTHER	PTHR23081	RNA POLYMERASE II CTD PHOSPHATASE	coord: 47..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg020967.1	Spg020967.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070940	dephosphorylation of RNA polymerase II C-terminal domain
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008420	RNA polymerase II CTD heptapeptide repeat phosphatase activity