Spg020936 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg020936
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionF-box/RNI-like superfamily protein
Locationscaffold9: 2864703 .. 2867230 (-)
RNA-Seq ExpressionSpg020936
SyntenySpg020936
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATAATGGGCGATGTTCTTTGTGTGCAAAGGTTGAGATCTGCACACCAAGGCTTGGTTTTGTAAAGTTTGAAGGGAGTTTGCCTGTGGTGTGTTCTTTGGAGAAGCTGGCTTATTTACAGAAAGTGGAAATAGTACTACTTGATCCAATCTTCCATGGCCATGGTCCTGTTGAGCAGAGAAAGTTGGCTCAAAATCTTGCTAGAACTCTTAGTGTTCTTCCCAATGCCATGGCAATTAGAATGTCTTTAATGGCCTTTCGGGTATGGATTTCCAACTATTTGTTTGCTTAGAACTTGGAGGAACTAATCATCAACTCCATGTCTTCTCTGTTAGGCATCATTAGCTCTAAAAATTTGCTTGCTGGGCTTCCAAAATTCTTGTGTGTGGGACTTAGAGTTAGAGTGGGTGAGTTTGGGATAACTTTTCCTATAAACACTATCAAGAGAAACACCAATTTAGTGTTTGTTTTAAGAGTACTTTAAGCGTCCGTTTGAAATATATTTTAATTTAAATGTTTTTCAAGAATGAATTTTCTTAAAATAAAATTTGTTAAAAATTGTTTATAATTTAAACACTCCTATGTTTGGTTACACTTACTCATAAGTGTTTTTATGCTCAATTTCTTGTATACTTAAAAACTCTTTTTAGAAAAGTTGGTTTCAAGTGTTTCTCTCAAAATAATTTATTTCTCAATCTCATTTTCTAATAAGTCATTTTTAGTGGTTGCCAAACACTAAAATTTTTTTCAAAATGATTTTTTTTTTCAAAATTAAACACGTAGGCCTCGTTTGATAACCATTTGGTTTTTGGTTTTTGGATTTTGAAAATTAAACTTGTTTTCTTCCAAATTTCTTACCATGGTTTTCATCATTGTCAATGACACATTTGAATTCCTAGCCAAATTCCAAAAACAAAAACAAGTTTTTGAAAACTACTTTTTTTAGTTTTTAAAACTTGAGTTGGTTTTTGAAAACGTGGAAAGAGGGTAGAGAACAAAACAAAGAAATTTATTAATGGAAGTAGTGTTTATAGGCTTAATTTTCAAAAACCAAAAACAAAAAACAAAATGGTTTTGTACAAAGTTGTAGGATCGAGACAAAATATTTTACAAATTTAGGAACTAGAATAAGATAACCTTTACAGACCAACTTGTGGGCACAAAATCTTGTAGTGGCAACCTACCTATGATGTTAAAATTCTACAAATTTTCTTCTAAAAATTCTTTAAACCAACTAATTTTTGTCAATTGAACTATTAGGGATATAGTTTAATCTTAAAGATTTTTTTTTTAATACATGTAGGACCCATTTGGAATAGATTTTAATGTAAGTGTTTTTCAATAATGCATTTTTTAATAAACATTTTGTATAAAAATTGCTTAGAATTTAAACACTCATATGTTTGGTTACATTTCCTCCTAAAGGATTTTACACACAAATTATTATATACTTAAAAACTATTTTTAAAAAATTTGCTTTCAAATGTTTCTCTTAAAGTAGTTCATTTGCCGATCTCTTTTATTAATAAGTCATTTTTAGTGGTTGCCAAACACTAGAATTTTTTTTAGATGACTTTTTTTTCAAAAGTAAACACTTGAAAAGTTAAGGCCCCGTTTGGTTCATGATCCGTTTTCGTTTTTATGTTTTCGAAAATAAAAAATACAAGGGAAACCATGAAAACGTGTTTGGTATGCCTATTTTGAAAAACAATTTTCGAAAACAACTCAAAAAATGGCCTGTTTTCAAAAACGATAAAATGTTGTTTTCATTGTTTTCCAATTTTGTTTTCAGAATAATGGAAACACGAGATACAACTCTAAAAACATGGGATACATATTTCTTTCCATCAAACAATGTTGCATTATCTACAAACAACATAACCAAACACAGTTTTCAAATCAAAAGTTTCATATAATACAACTATATGATATATGTTTTTTTTTTCTTATAATTTCAATTCCTACAATTTTTTTTTTAAGAATCAATTCCAGCATCATTGATTTATAATCTCTCTAAAAATGAATAAAAGTCAAGTAGAAAAATAATCAAATTAAATTAACTTTTTCTAAAAAAAATTAATTTTACCCGGCACATATTAATATTTTCATGCATTTTCAAATTCATAACCAAACACAGTTTTCAAATTTTGAATTCAAATTTAAAGTTTTTAAATTAGAACCAAACATGTTTTTAGATATAATGGAAATAAAAAATTTGTTTTCGTTTTCTGTTGAATTCTTTATTTTCGAAAACAATTTTCAAATCACGAACCAAACGGGGCCAACCAAACATAACCGTAATATACTAACGGTCTCCTTTTCTTTTTGTCTCAGCTTCTCTCCAACTTTCCATCAGTTTTAGAGGATAAGTCAAATCTGTTCTCTAAGTTGGGGCATTTAAAGTTGAAGAAAGATGCTAAATCCACAACCATGGAAATTCCAGTGAATGTGATGGCCTGCTTGCTTGGGAGGGCTCCTTTTCTAAAAACCATATTGGTTGAACTCTAGTATGGTAACCTTCGCAAC

mRNA sequence

ATGCATAATGGGCGATGTTCTTTGTGTGCAAAGGTTGAGATCTGCACACCAAGGCTTGGTTTTGTAAAGTTTGAAGGGAGTTTGCCTGTGGTGTGTTCTTTGGAGAAGCTGGCTTATTTACAGAAAGTGGAAATAGTACTACTTGATCCAATCTTCCATGGCCATGGTCCTGTTGAGCAGAGAAAGTTGGCTCAAAATCTTGCTAGAACTCTTAGTGTTCTTCCCAATGCCATGGCAATTAGAATGTCTTTAATGGCCTTTCGGCTTCTCTCCAACTTTCCATCAGTTTTAGAGGATAAGTCAAATCTGTTCTCTAAGTTGGGGCATTTAAAGTTGAAGAAAGATGCTAAATCCACAACCATGGAAATTCCAGTGAATGTGATGGCCTGCTTGCTTGGGAGGGCTCCTTTTCTAAAAACCATATTGGTTGAACTCTAG

Coding sequence (CDS)

ATGCATAATGGGCGATGTTCTTTGTGTGCAAAGGTTGAGATCTGCACACCAAGGCTTGGTTTTGTAAAGTTTGAAGGGAGTTTGCCTGTGGTGTGTTCTTTGGAGAAGCTGGCTTATTTACAGAAAGTGGAAATAGTACTACTTGATCCAATCTTCCATGGCCATGGTCCTGTTGAGCAGAGAAAGTTGGCTCAAAATCTTGCTAGAACTCTTAGTGTTCTTCCCAATGCCATGGCAATTAGAATGTCTTTAATGGCCTTTCGGCTTCTCTCCAACTTTCCATCAGTTTTAGAGGATAAGTCAAATCTGTTCTCTAAGTTGGGGCATTTAAAGTTGAAGAAAGATGCTAAATCCACAACCATGGAAATTCCAGTGAATGTGATGGCCTGCTTGCTTGGGAGGGCTCCTTTTCTAAAAACCATATTGGTTGAACTCTAG

Protein sequence

MHNGRCSLCAKVEICTPRLGFVKFEGSLPVVCSLEKLAYLQKVEIVLLDPIFHGHGPVEQRKLAQNLARTLSVLPNAMAIRMSLMAFRLLSNFPSVLEDKSNLFSKLGHLKLKKDAKSTTMEIPVNVMACLLGRAPFLKTILVEL
Homology
BLAST of Spg020936 vs. NCBI nr
Match: XP_017984420.1 (PREDICTED: F-box/LRR-repeat protein At3g26922 [Theobroma cacao])

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-07
Identity = 43/130 (33.08%), Postives = 66/130 (50.77%), Query Frame = 0

Query: 11  KVEICTPRLGFVKFEGSLPVVCSLEKLAYLQKVEIVLLDPIFHGHGPVEQRKLAQNLART 70
           KVEIC PRL   K+ G  P+VC  E LA+L  V     D   +     E+  + + L  T
Sbjct: 253 KVEICAPRLTTFKYSGIPPIVCLKENLAFLDDVS---FDIKAYSLKRNEEESVIR-LINT 312

Query: 71  LSVLPNAMAIRMSLMAFRLLSNFPSVLEDKSNLFSKLGHLKLK-KDAKSTTMEIPVNVMA 130
            +    A ++ +S    ++L+ FPS+L+     F+ L HLK+K K  +S   E+P  ++ 
Sbjct: 313 FNEFRQAKSLTLSTSTVKILAKFPSLLDQNRLPFANLKHLKIKVKKWQSKRFEMPACILN 372

Query: 131 CLLGRAPFLK 140
           C L  +  LK
Sbjct: 373 CFLNNSTILK 378

BLAST of Spg020936 vs. NCBI nr
Match: EOY20083.1 (F-box/RNI-like superfamily protein [Theobroma cacao])

HSP 1 Score: 64.3 bits (155), Expect = 9.8e-07
Identity = 43/130 (33.08%), Postives = 66/130 (50.77%), Query Frame = 0

Query: 11  KVEICTPRLGFVKFEGSLPVVCSLEKLAYLQKVEIVLLDPIFHGHGPVEQRKLAQNLART 70
           KVEIC PRL   K+ G  P+VC  E LA+L   + V  D   +     E+  + + L  T
Sbjct: 253 KVEICAPRLTTFKYSGIPPIVCLKENLAFL---DDVYFDIKAYSLKRNEEESVIR-LINT 312

Query: 71  LSVLPNAMAIRMSLMAFRLLSNFPSVLEDKSNLFSKLGHLKLK-KDAKSTTMEIPVNVMA 130
                 A ++ +S    ++L+ FPS+L+     F+ L HLK+K K  +S   E+P  ++ 
Sbjct: 313 FKEFRQAKSLTLSTSTVKILAKFPSLLDQNRLPFANLKHLKIKVKKWQSKRFEMPACILN 372

Query: 131 CLLGRAPFLK 140
           C L  +  LK
Sbjct: 373 CFLNNSTILK 378

BLAST of Spg020936 vs. NCBI nr
Match: XP_011040385.1 (PREDICTED: F-box/LRR-repeat protein At3g26922-like [Populus euphratica])

HSP 1 Score: 55.1 bits (131), Expect = 6.0e-04
Identity = 46/152 (30.26%), Postives = 68/152 (44.74%), Query Frame = 0

Query: 3   NGRCSLC---AKVEICTPRLGFVKFEGSLPVVCSLEKLAYLQKVEIVLLDPIFHGH---- 62
           N RCS      KV +  P+L   KF+G+ P+  S   L  L  V +V L    H H    
Sbjct: 244 NWRCSRIMHGCKVMLFAPKLTSFKFDGNTPLFWSEVNLTSLDDVTVV-LQRYHHSHNYPF 303

Query: 63  --------GPVEQRKLAQNLARTLSVLPNAMAIRMSLMAFRLLSNFPSVLEDKSNLFSKL 122
                      ++  L  NL + L     A ++ +S+    +LS  P+ L+   + FS L
Sbjct: 304 YEVEDEYISEEDEMGLGLNLIKMLHQFCIAKSLTLSMNIIEILSEVPAALDKHPSPFSSL 363

Query: 123 GHLKLKKDAKSTTMEIPVNVMACLLGRAPFLK 140
            +LKLK D K  T  +P +V+   L  + FLK
Sbjct: 364 KYLKLKTDHKDVT--LPAHVLNYFLRSSSFLK 392

BLAST of Spg020936 vs. NCBI nr
Match: XP_017984699.1 (PREDICTED: putative F-box/FBD/LRR-repeat protein At5g22670 [Theobroma cacao])

HSP 1 Score: 54.7 bits (130), Expect = 7.8e-04
Identity = 40/130 (30.77%), Postives = 64/130 (49.23%), Query Frame = 0

Query: 11  KVEICTPRLGFVKFEGSLPVVCSLEKLAYLQKVEIVLLDPIFHGHGPVEQRKLAQNLART 70
           KVEI  PRL   K  G +P+VC  E LA+L  V   +   IF     + + +    L   
Sbjct: 240 KVEIYAPRLTTFKDSGYVPMVCLRENLAFLDDVYFDIKASIF----ILNEEEHVIRLINA 299

Query: 71  LSVLPNAMAIRMSLMAFRLLSNFPSVLEDKSNLFSKLGHLKLK-KDAKSTTMEIPVNVMA 130
            +   +A ++ +S    ++L+ FPS+++     F+ L HL +K K  +S   EIP  ++ 
Sbjct: 300 FNEFRHAKSLTLSTSTVKVLTKFPSMVDRNLLPFANLKHLNIKVKKWQSKGFEIPACILN 359

Query: 131 CLLGRAPFLK 140
             L R+  LK
Sbjct: 360 YFLNRSTVLK 365

BLAST of Spg020936 vs. ExPASy TrEMBL
Match: A0A061FSZ8 (F-box/RNI-like superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_045482 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.8e-07
Identity = 43/130 (33.08%), Postives = 66/130 (50.77%), Query Frame = 0

Query: 11  KVEICTPRLGFVKFEGSLPVVCSLEKLAYLQKVEIVLLDPIFHGHGPVEQRKLAQNLART 70
           KVEIC PRL   K+ G  P+VC  E LA+L   + V  D   +     E+  + + L  T
Sbjct: 253 KVEICAPRLTTFKYSGIPPIVCLKENLAFL---DDVYFDIKAYSLKRNEEESVIR-LINT 312

Query: 71  LSVLPNAMAIRMSLMAFRLLSNFPSVLEDKSNLFSKLGHLKLK-KDAKSTTMEIPVNVMA 130
                 A ++ +S    ++L+ FPS+L+     F+ L HLK+K K  +S   E+P  ++ 
Sbjct: 313 FKEFRQAKSLTLSTSTVKILAKFPSLLDQNRLPFANLKHLKIKVKKWQSKRFEMPACILN 372

Query: 131 CLLGRAPFLK 140
           C L  +  LK
Sbjct: 373 CFLNNSTILK 378

BLAST of Spg020936 vs. ExPASy TrEMBL
Match: A0A061FZ54 (F-box/RNI-like superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_045483 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.9e-04
Identity = 40/125 (32.00%), Postives = 62/125 (49.60%), Query Frame = 0

Query: 11  KVEICTPRLGFVKFEGSLPVVCSLEKLAYLQKVEIVLLDP--IFHGHGPVEQRKLAQNLA 70
           KVEI  PRL   K+ G+ P+VC  + LA +  V   +  P    H  G    R +     
Sbjct: 257 KVEIYAPRLTTFKYSGTPPIVCLTDHLASVDNVYFDIKTPPRFRHSEGEYVLRSI----- 316

Query: 71  RTLSVLPNAMAIRMSLMAFRLLSNFPSVLEDKSNLFSKLGHLKLK-KDAKSTTMEIPVNV 130
            TLS   +A ++ +S    ++L+ FPS+L+     F+ L H+K+K K  +    E+P   
Sbjct: 317 NTLSEFRHAKSLTLSSSTVQVLTKFPSLLDQNPLSFANLKHMKIKVKKWERDRFEMP--- 372

Query: 131 MACLL 133
            AC+L
Sbjct: 377 -ACIL 372

BLAST of Spg020936 vs. ExPASy TrEMBL
Match: A0A2K1YI97 (F-box domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G104300 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.9e-04
Identity = 45/150 (30.00%), Postives = 66/150 (44.00%), Query Frame = 0

Query: 4   GRCSLCAKVEICTPRLGFVKFEGSLPVVCSLEKLAYLQKVEIVLLDPIFHGHG------- 63
           GR     KV +  P+L   KF G+ P+  S   L  L  V +V L    H H        
Sbjct: 248 GRIMRGCKVMLFAPKLTSFKFYGNTPLFWSDVNLTSLDDVNVV-LQRYHHSHNYPFYVVE 307

Query: 64  -------PVEQRKLAQNLARTLSVLPNAMAIRMSLMAFRLLSNFPSVLEDKSNLFSKLGH 123
                     ++ L  NL + L    +A ++ +S+    +LS  P+ L+   + FS L +
Sbjct: 308 DEYISEEDETEQGLGLNLIKMLHQFCSAKSLTLSMNIIEILSEVPAALDKHPSPFSNLKY 367

Query: 124 LKLKKDAKSTTMEIPVNVMACLLGRAPFLK 140
           LKLK D K  T  +P +V+   L  A FLK
Sbjct: 368 LKLKTDHKDVT--LPAHVLNYFLRSASFLK 394

BLAST of Spg020936 vs. ExPASy TrEMBL
Match: A0A061FSK8 (F-box/RNI-like superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_045475 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.4e-04
Identity = 39/130 (30.00%), Postives = 64/130 (49.23%), Query Frame = 0

Query: 11  KVEICTPRLGFVKFEGSLPVVCSLEKLAYLQKVEIVLLDPIFHGHGPVEQRKLAQNLART 70
           KVEI  PRL   K  G +P++C  E LA+L  V   +   IF     + + +    L   
Sbjct: 240 KVEIYAPRLTTFKDSGYVPMMCLRENLAFLDDVYFDIKASIF----ILNEEEHVIRLINA 299

Query: 71  LSVLPNAMAIRMSLMAFRLLSNFPSVLEDKSNLFSKLGHLKLK-KDAKSTTMEIPVNVMA 130
            +   +A ++ +S    ++L+ FPS+++     F+ L HL +K K  +S   EIP  ++ 
Sbjct: 300 FNEFRHAKSLTLSTSTVKVLTKFPSMVDRNLLPFANLKHLNIKVKKWQSKGFEIPACILN 359

Query: 131 CLLGRAPFLK 140
             L R+  LK
Sbjct: 360 YFLNRSTVLK 365

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_017984420.14.4e-0733.08PREDICTED: F-box/LRR-repeat protein At3g26922 [Theobroma cacao][more]
EOY20083.19.8e-0733.08F-box/RNI-like superfamily protein [Theobroma cacao][more]
XP_011040385.16.0e-0430.26PREDICTED: F-box/LRR-repeat protein At3g26922-like [Populus euphratica][more]
XP_017984699.17.8e-0430.77PREDICTED: putative F-box/FBD/LRR-repeat protein At5g22670 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A061FSZ84.8e-0733.08F-box/RNI-like superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_045482 PE=4... [more]
A0A061FZ544.9e-0432.00F-box/RNI-like superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_045483 PE=4... [more]
A0A2K1YI974.9e-0430.00F-box domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G1043... [more]
A0A061FSK88.4e-0430.00F-box/RNI-like superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_045475 PE=4... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg020936.1Spg020936.1mRNA