Spg020936 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATAATGGGCGATGTTCTTTGTGTGCAAAGGTTGAGATCTGCACACCAAGGCTTGGTTTTGTAAAGTTTGAAGGGAGTTTGCCTGTGGTGTGTTCTTTGGAGAAGCTGGCTTATTTACAGAAAGTGGAAATAGTACTACTTGATCCAATCTTCCATGGCCATGGTCCTGTTGAGCAGAGAAAGTTGGCTCAAAATCTTGCTAGAACTCTTAGTGTTCTTCCCAATGCCATGGCAATTAGAATGTCTTTAATGGCCTTTCGGGTATGGATTTCCAACTATTTGTTTGCTTAGAACTTGGAGGAACTAATCATCAACTCCATGTCTTCTCTGTTAGGCATCATTAGCTCTAAAAATTTGCTTGCTGGGCTTCCAAAATTCTTGTGTGTGGGACTTAGAGTTAGAGTGGGTGAGTTTGGGATAACTTTTCCTATAAACACTATCAAGAGAAACACCAATTTAGTGTTTGTTTTAAGAGTACTTTAAGCGTCCGTTTGAAATATATTTTAATTTAAATGTTTTTCAAGAATGAATTTTCTTAAAATAAAATTTGTTAAAAATTGTTTATAATTTAAACACTCCTATGTTTGGTTACACTTACTCATAAGTGTTTTTATGCTCAATTTCTTGTATACTTAAAAACTCTTTTTAGAAAAGTTGGTTTCAAGTGTTTCTCTCAAAATAATTTATTTCTCAATCTCATTTTCTAATAAGTCATTTTTAGTGGTTGCCAAACACTAAAATTTTTTTCAAAATGATTTTTTTTTTCAAAATTAAACACGTAGGCCTCGTTTGATAACCATTTGGTTTTTGGTTTTTGGATTTTGAAAATTAAACTTGTTTTCTTCCAAATTTCTTACCATGGTTTTCATCATTGTCAATGACACATTTGAATTCCTAGCCAAATTCCAAAAACAAAAACAAGTTTTTGAAAACTACTTTTTTTAGTTTTTAAAACTTGAGTTGGTTTTTGAAAACGTGGAAAGAGGGTAGAGAACAAAACAAAGAAATTTATTAATGGAAGTAGTGTTTATAGGCTTAATTTTCAAAAACCAAAAACAAAAAACAAAATGGTTTTGTACAAAGTTGTAGGATCGAGACAAAATATTTTACAAATTTAGGAACTAGAATAAGATAACCTTTACAGACCAACTTGTGGGCACAAAATCTTGTAGTGGCAACCTACCTATGATGTTAAAATTCTACAAATTTTCTTCTAAAAATTCTTTAAACCAACTAATTTTTGTCAATTGAACTATTAGGGATATAGTTTAATCTTAAAGATTTTTTTTTTAATACATGTAGGACCCATTTGGAATAGATTTTAATGTAAGTGTTTTTCAATAATGCATTTTTTAATAAACATTTTGTATAAAAATTGCTTAGAATTTAAACACTCATATGTTTGGTTACATTTCCTCCTAAAGGATTTTACACACAAATTATTATATACTTAAAAACTATTTTTAAAAAATTTGCTTTCAAATGTTTCTCTTAAAGTAGTTCATTTGCCGATCTCTTTTATTAATAAGTCATTTTTAGTGGTTGCCAAACACTAGAATTTTTTTTAGATGACTTTTTTTTCAAAAGTAAACACTTGAAAAGTTAAGGCCCCGTTTGGTTCATGATCCGTTTTCGTTTTTATGTTTTCGAAAATAAAAAATACAAGGGAAACCATGAAAACGTGTTTGGTATGCCTATTTTGAAAAACAATTTTCGAAAACAACTCAAAAAATGGCCTGTTTTCAAAAACGATAAAATGTTGTTTTCATTGTTTTCCAATTTTGTTTTCAGAATAATGGAAACACGAGATACAACTCTAAAAACATGGGATACATATTTCTTTCCATCAAACAATGTTGCATTATCTACAAACAACATAACCAAACACAGTTTTCAAATCAAAAGTTTCATATAATACAACTATATGATATATGTTTTTTTTTTCTTATAATTTCAATTCCTACAATTTTTTTTTTAAGAATCAATTCCAGCATCATTGATTTATAATCTCTCTAAAAATGAATAAAAGTCAAGTAGAAAAATAATCAAATTAAATTAACTTTTTCTAAAAAAAATTAATTTTACCCGGCACATATTAATATTTTCATGCATTTTCAAATTCATAACCAAACACAGTTTTCAAATTTTGAATTCAAATTTAAAGTTTTTAAATTAGAACCAAACATGTTTTTAGATATAATGGAAATAAAAAATTTGTTTTCGTTTTCTGTTGAATTCTTTATTTTCGAAAACAATTTTCAAATCACGAACCAAACGGGGCCAACCAAACATAACCGTAATATACTAACGGTCTCCTTTTCTTTTTGTCTCAGCTTCTCTCCAACTTTCCATCAGTTTTAGAGGATAAGTCAAATCTGTTCTCTAAGTTGGGGCATTTAAAGTTGAAGAAAGATGCTAAATCCACAACCATGGAAATTCCAGTGAATGTGATGGCCTGCTTGCTTGGGAGGGCTCCTTTTCTAAAAACCATATTGGTTGAACTCTAGTATGGTAACCTTCGCAAC ATGCATAATGGGCGATGTTCTTTGTGTGCAAAGGTTGAGATCTGCACACCAAGGCTTGGTTTTGTAAAGTTTGAAGGGAGTTTGCCTGTGGTGTGTTCTTTGGAGAAGCTGGCTTATTTACAGAAAGTGGAAATAGTACTACTTGATCCAATCTTCCATGGCCATGGTCCTGTTGAGCAGAGAAAGTTGGCTCAAAATCTTGCTAGAACTCTTAGTGTTCTTCCCAATGCCATGGCAATTAGAATGTCTTTAATGGCCTTTCGGCTTCTCTCCAACTTTCCATCAGTTTTAGAGGATAAGTCAAATCTGTTCTCTAAGTTGGGGCATTTAAAGTTGAAGAAAGATGCTAAATCCACAACCATGGAAATTCCAGTGAATGTGATGGCCTGCTTGCTTGGGAGGGCTCCTTTTCTAAAAACCATATTGGTTGAACTCTAG ATGCATAATGGGCGATGTTCTTTGTGTGCAAAGGTTGAGATCTGCACACCAAGGCTTGGTTTTGTAAAGTTTGAAGGGAGTTTGCCTGTGGTGTGTTCTTTGGAGAAGCTGGCTTATTTACAGAAAGTGGAAATAGTACTACTTGATCCAATCTTCCATGGCCATGGTCCTGTTGAGCAGAGAAAGTTGGCTCAAAATCTTGCTAGAACTCTTAGTGTTCTTCCCAATGCCATGGCAATTAGAATGTCTTTAATGGCCTTTCGGCTTCTCTCCAACTTTCCATCAGTTTTAGAGGATAAGTCAAATCTGTTCTCTAAGTTGGGGCATTTAAAGTTGAAGAAAGATGCTAAATCCACAACCATGGAAATTCCAGTGAATGTGATGGCCTGCTTGCTTGGGAGGGCTCCTTTTCTAAAAACCATATTGGTTGAACTCTAG MHNGRCSLCAKVEICTPRLGFVKFEGSLPVVCSLEKLAYLQKVEIVLLDPIFHGHGPVEQRKLAQNLARTLSVLPNAMAIRMSLMAFRLLSNFPSVLEDKSNLFSKLGHLKLKKDAKSTTMEIPVNVMACLLGRAPFLKTILVEL Homology
BLAST of Spg020936 vs. NCBI nr
Match: XP_017984420.1 (PREDICTED: F-box/LRR-repeat protein At3g26922 [Theobroma cacao]) HSP 1 Score: 65.5 bits (158), Expect = 4.4e-07 Identity = 43/130 (33.08%), Postives = 66/130 (50.77%), Query Frame = 0
BLAST of Spg020936 vs. NCBI nr
Match: EOY20083.1 (F-box/RNI-like superfamily protein [Theobroma cacao]) HSP 1 Score: 64.3 bits (155), Expect = 9.8e-07 Identity = 43/130 (33.08%), Postives = 66/130 (50.77%), Query Frame = 0
BLAST of Spg020936 vs. NCBI nr
Match: XP_011040385.1 (PREDICTED: F-box/LRR-repeat protein At3g26922-like [Populus euphratica]) HSP 1 Score: 55.1 bits (131), Expect = 6.0e-04 Identity = 46/152 (30.26%), Postives = 68/152 (44.74%), Query Frame = 0
BLAST of Spg020936 vs. NCBI nr
Match: XP_017984699.1 (PREDICTED: putative F-box/FBD/LRR-repeat protein At5g22670 [Theobroma cacao]) HSP 1 Score: 54.7 bits (130), Expect = 7.8e-04 Identity = 40/130 (30.77%), Postives = 64/130 (49.23%), Query Frame = 0
BLAST of Spg020936 vs. ExPASy TrEMBL
Match: A0A061FSZ8 (F-box/RNI-like superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_045482 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 4.8e-07 Identity = 43/130 (33.08%), Postives = 66/130 (50.77%), Query Frame = 0
BLAST of Spg020936 vs. ExPASy TrEMBL
Match: A0A061FZ54 (F-box/RNI-like superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_045483 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 4.9e-04 Identity = 40/125 (32.00%), Postives = 62/125 (49.60%), Query Frame = 0
BLAST of Spg020936 vs. ExPASy TrEMBL
Match: A0A2K1YI97 (F-box domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G104300 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 4.9e-04 Identity = 45/150 (30.00%), Postives = 66/150 (44.00%), Query Frame = 0
BLAST of Spg020936 vs. ExPASy TrEMBL
Match: A0A061FSK8 (F-box/RNI-like superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_045475 PE=4 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 8.4e-04 Identity = 39/130 (30.00%), Postives = 64/130 (49.23%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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