Spg020190 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg020190
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold1: 28205773 .. 28207727 (+)
RNA-Seq Expression	Spg020190
Synteny	Spg020190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGTCAAAGACCAAGAGGTAAGGAGAACTAATTCCTCACTCAAGGTTAGAACACTCCACAAGCAAGTTGATCAGACCTACCTGAATGTTCATGCTTGCAACTCTGAATTCAAGAATTGCAAAGTGGGTGATGAGGCTTAGTCATCAAGAAAAGCGCAAAAGGCTAAAAACTCAATTCATCATAAAACTAGCGTACAAACCTAATGGCCAAGCTTTAAATAGCTTCCCAAAACCCTAACTACATGCCACATCATTGATCATAACAAAATGACCAAAGTACCCCTACTAATAAGTCATAAAAGGGACAATATTGGAAAATAATAAAATTACATCAAATTATTGAATTACATATAAATAATAATTCAATGTGTCTTTGGCGGTTCATATCACTCTCCTTCGTACACCTGTCTTGAAACCGAGGTGTTTGCATCGATGGCGGTTAGTACTAGATTTCATTTTGTTCGTTAATTAAATTGATGTTGTTACAAAATAACTTGATTGTTGATAATTTTTGTAGGTTGTTGTCACGATACATCTTGTTCTCACCGACGAAGAGAGAGAGTTTATGTCTCTAACGCTGTAGGCTCCACTTGTAGAACCTGCCCTTCCCCCTCTCCCTGCAGTTGTCCCTCAGGTGGAGGGGGGTGCAGGGTTGGATGATATGGAGCTGGATCCACTCGAAGTGGGGGATTACTTGGGTGTGGAAGAAGGAAGCTTTGGATCCACTCACTTTATCCCTCAGAAGGTCGAGATGACGAAAGGGAAAGCAAATGACGAGATGGAGATAGTGAAAGAGAAAGATATTAAAAGAGAAAAGGGTAAAGAGAAAGTAGTGGATGAAGAAGTGATCGAACAAGAAAAGAATAAGAAGAAGAAGAAGAAAGAGAAAGAGAAGGAGGTGGAGACGGAGAAAGTGAAAGAAAAAGATGTTAAAGGAGAAAAGGGTAAAGAGAAAGTAGTGGATGAAGAAGTGATCGAACAAGAAAAGAATAAGAAGAAGAAAGGGAAAGAGAAGAAGTTGGAGACGGAGAAAGTGAAAGATAAAGATATTGAAGGAGATAAGGGCAAAGAGAAAGTAGTGGATGAACAAGTGATCGAAGGAGAAGAGAAGGAGAAGAAGCGGAGTTGCACGACATGCGTAGATTTTTACGAAAGCTTGCTAAGGTATCATTTGATTACATGTGTTCTTTTTATTTCTTATGCCTTTTTTTACATGACAATTAATGAGTGTGTTATATACAGGATAAAAGTGTAGACCTGACTAAGTACATTGGACGTGACGATGATGCGGGTAATGGGGGTCCATCCACCAAAAATCATGCAAAAAAGGGTAATGAGCGTGACGCTGAGGAACAACGTACCTGGTAGTGGGAAGGGGGTTGGTGATGATGACGAGGGTCCATCCACTGAAAAACATGATGACGCGACCGGGGAACGTGACACCGATGACGACATAGGAGTCAGTGGGAAGGTGGATGACATCGTGGTACCTAAACCGGAGGTAAGTCATCTTTGAGTTTCAAAATTATGTAGTTTAGGGCTTACATAATTATATTTATCTTACTGTGTAGCCTGTTGAGTTTGAGGACGGGGAGGAGGACAAAATGGACGTAACGGGATCGGATGAACCCATCATGCGTCGTGGAAAGCGTGTCCATCAGATATCTTGGAAACTTCGATCTCCATGGACTGACATCAGACCTGATGGTAAACGAAAGAAGTCGAAGATGTATGACCCTATGCGTTCCATTCCCGATGAGTTTGAACAATCGTTTCAGAAATGGTTGGACGACCCTGCATCCGATGGATCAGAATGAAAGGTCGTTTATTCATACAAGAACAAGTTCTGGTTTAAAATTTTGATAAATTCGTCATATTGGACGAGCGATGAGGTACACTAAAACCCATTACATGTTATTTTCATGCATGCATATAAACACTAAATAGTGGAG

mRNA sequence

ATGATCGTCAAAGACCAAGAGGTAAGGAGAACTAATTCCTCACTCAAGGTTAGAACACTCCACAAGCAAGTTGATCAGACCTACCTGAATGTTCATGCTTGCAACTCTGAATTCAAGAATTGCAAAGTGGAACCTGCCCTTCCCCCTCTCCCTGCAGTTGTCCCTCAGGTGGAGGGGGGTGCAGGGTTGGATGATATGGAGCTGGATCCACTCGAAGTGGGGGATTACTTGGGTGTGGAAGAAGGAAGCTTTGGATCCACTCACTTTATCCCTCAGAAGGTCGAGATGACGAAAGGGAAAGCAAATGACGAGATGGAGATAGTGAAAGAGAAAGATATTAAAAGAGAAAAGGGTAAAGAGAAAGTAGTGGATGAAGAAGTGATCGAACAAGAAAAGAATAAGAAGAAGAAGAAGAAAGAGAAAGAGAAGGAGGTGGAGACGGAGAAAGTGAAAGAAAAAGATGTTAAAGGAGAAAAGGGTAAAGAGAAAGTAGTGGATGAAGAAGTGATCGAACAAGAAAAGAATAAGAAGAAGAAAGGGAAAGAGAAGAAGTTGGAGACGGAGAAAGTGAAAGATAAAGATATTGAAGGAGATAAGGGCAAAGAGAAAGTAGTGGATGAACAAGTGATCGAAGGAGAAGAGAAGGAGAAGAAGCGGAGTTGCACGACATGCGTAGATTTTTACGAAAGCTTGCTAAGGAACAACGTACCTGGTAGTGGGAAGGGGGTTGGTGATGATGACGAGGGTCCATCCACTGAAAAACATGATGACGCGACCGGGGAACGTGACACCGATGACGACATAGGAGTCAGTGGGAAGGTGGATGACATCGTGGTACCTAAACCGGAGCCTGTTGAGTTTGAGGACGGGGAGGAGGACAAAATGGACGTAACGGGATCGGATGAACCCATCATGCGTCGTGGAAAGCGTGTCCATCAGATATCTTGGAAACTTCGATCTCCATGGACTGACATCAGACCTGATGGTAAACGAAAGAAGTCGAAGATGTATGACCCTATGCGTTCCATTCCCGATGAGTTTGAACAATCGTTTCAGAAATGGTTGGACGACCCTGCATCCGATGGATCAGAATGA

Coding sequence (CDS)

ATGATCGTCAAAGACCAAGAGGTAAGGAGAACTAATTCCTCACTCAAGGTTAGAACACTCCACAAGCAAGTTGATCAGACCTACCTGAATGTTCATGCTTGCAACTCTGAATTCAAGAATTGCAAAGTGGAACCTGCCCTTCCCCCTCTCCCTGCAGTTGTCCCTCAGGTGGAGGGGGGTGCAGGGTTGGATGATATGGAGCTGGATCCACTCGAAGTGGGGGATTACTTGGGTGTGGAAGAAGGAAGCTTTGGATCCACTCACTTTATCCCTCAGAAGGTCGAGATGACGAAAGGGAAAGCAAATGACGAGATGGAGATAGTGAAAGAGAAAGATATTAAAAGAGAAAAGGGTAAAGAGAAAGTAGTGGATGAAGAAGTGATCGAACAAGAAAAGAATAAGAAGAAGAAGAAGAAAGAGAAAGAGAAGGAGGTGGAGACGGAGAAAGTGAAAGAAAAAGATGTTAAAGGAGAAAAGGGTAAAGAGAAAGTAGTGGATGAAGAAGTGATCGAACAAGAAAAGAATAAGAAGAAGAAAGGGAAAGAGAAGAAGTTGGAGACGGAGAAAGTGAAAGATAAAGATATTGAAGGAGATAAGGGCAAAGAGAAAGTAGTGGATGAACAAGTGATCGAAGGAGAAGAGAAGGAGAAGAAGCGGAGTTGCACGACATGCGTAGATTTTTACGAAAGCTTGCTAAGGAACAACGTACCTGGTAGTGGGAAGGGGGTTGGTGATGATGACGAGGGTCCATCCACTGAAAAACATGATGACGCGACCGGGGAACGTGACACCGATGACGACATAGGAGTCAGTGGGAAGGTGGATGACATCGTGGTACCTAAACCGGAGCCTGTTGAGTTTGAGGACGGGGAGGAGGACAAAATGGACGTAACGGGATCGGATGAACCCATCATGCGTCGTGGAAAGCGTGTCCATCAGATATCTTGGAAACTTCGATCTCCATGGACTGACATCAGACCTGATGGTAAACGAAAGAAGTCGAAGATGTATGACCCTATGCGTTCCATTCCCGATGAGTTTGAACAATCGTTTCAGAAATGGTTGGACGACCCTGCATCCGATGGATCAGAATGA

Protein sequence

MIVKDQEVRRTNSSLKVRTLHKQVDQTYLNVHACNSEFKNCKVEPALPPLPAVVPQVEGGAGLDDMELDPLEVGDYLGVEEGSFGSTHFIPQKVEMTKGKANDEMEIVKEKDIKREKGKEKVVDEEVIEQEKNKKKKKKEKEKEVETEKVKEKDVKGEKGKEKVVDEEVIEQEKNKKKKGKEKKLETEKVKDKDIEGDKGKEKVVDEQVIEGEEKEKKRSCTTCVDFYESLLRNNVPGSGKGVGDDDEGPSTEKHDDATGERDTDDDIGVSGKVDDIVVPKPEPVEFEDGEEDKMDVTGSDEPIMRRGKRVHQISWKLRSPWTDIRPDGKRKKSKMYDPMRSIPDEFEQSFQKWLDDPASDGSE

Homology

The following BLAST results are available for this feature:

BLAST of Spg020190 vs.


Match Name	E-value	Identity	Description

BLAST of Spg020190 vs.


Match Name	E-value	Identity	Description

BLAST of Spg020190 vs.


Match Name	E-value	Identity	Description

BLAST of Spg020190 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 128..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 231..308
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 246..272
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg020190.1	Spg020190.1	mRNA