Spg016326 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg016326
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionF-box/WD repeat-containing protein sel-10-like
Locationscaffold9: 41369665 .. 41372139 (-)
RNA-Seq ExpressionSpg016326
SyntenySpg016326
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGCCAATATAATTCCCGATGCCATGGCCTTCCGTTCCAACAAGTCTTTACTCAGCATAATGGTCGACGACGATGAAAAACAAACGACGACGGCACAAATAATCGATTCCCAAAAGGATTGGTCAGAAGAAGCGAGCCCACATGGGTCGAAGGTGGTGAAGGTAATCCCTCCGCCGAGCCCTGGATCGCCTTGGAGTTTGTCTCCTTTGCGGACCCCTTCGCCTGTTTTGCTCTATCACTGCATAGCGTCGCTTCATCGGGGCGAAGGGAATATATATTCGATTGCTATTTCGAAGGGCGTGGTGTTTACTGGCTCCGATAGCTGCCGTGTTCGTGCATGGAAGCAGCCCGACTGCATGGAGCGTGGGTATCTCAAGGCCGCCGCTGGTGGAGTCAAGGCCATTGCGGCTTCCGGTATCTTTACTTTACTTTACTTTATTCCAGATTTTGATATTTTACTATTAATACACACTTGGATGGAGTTTGTAATTTTGGCGCCTCAAGGTATGTAATGGAAAAGAAATAAAACTTAAATATTTAAAAGTGGATTTGGTTAGGTTTAAAGGTTATGAATAATATAATTTAATCTCTAAACTTTACCACGATATAATCTTTTTTGAAAGTGTTTGAAATGATACTTGTAATATATTAAGGATTTAATGAAATTTTTCATTGTAACAAATTTTAAACTAGGAACTCACTCAATACTTTCATATGTTAGTAGTATAATTTTAATTAGGTCAAATTACAAATTTTGTGTCGGAAGAAATTTGGGATTTGATAAGTCTTAAAAAAAAAAATATATATATATATATATATAAACTTTAACGTTGTATTTAATAATTTCCTAAAATTTGAAGAGTATCTCTAATAAATTTTTATACTTTCCATTTTTCCTGAACTTAAAAACTGTCTTACAAGTTAGAGAGGTACTATGTACAAAATTAGAAATTAAAGAACCTATTTAGAACCAAATTAAAAGTTAAAGACTTCTATTTGACATTTTTTAAATTTTAGTGACTTAATTAAACATAACAACGAAAGATTAAGGATATACTAGACATTTTCTTAAAACAATTTATAGATTCATTACACACTACCTAGAAATTAAAACATTCTAGCCAAAGTACCATCTCATTTGTCTATTTAAGATAATTTCACATAATATATTATCTTATTGTATGGTCCAACACTATTATTCTTAAATGAGAATATTTCTAGTTCTACTACGTACTTAGTATGAAAATTTTCGCCTATTATCTTCATTCTTCGTTTCTCATACCGGCAACATTGAAAAATAGTATAAGATTCATGAGACAAAATAATATATCCTTAAATGATGTGTCAAATTTGGAGCGAAAAGCATAATTGCTATCATAGTATTTAAAAATTTCTGATTTTTTTTTCCAACATATCACCATTCAAATGTTACAATTAGGAAAGATAAAAAAAAAGTAATTCTCATTCTCTACCTTTTTGTTGGATCTAGTTTAATTTAACGCTCTTTGATTTCATTTGAATCAGGAAATATGTTGTTCACTTCACACAGAGATCAAAGAATCCGGGTATGGAATTTCACAGCATCAGAAAACCTGACGTCGAAAAAAATATGTTCACTCCCAAAAAAGACCTCCTTCCTCTTATTCTCCACAACAGAATCCACCCATCTCCACAAAGACACCATATCCTGCATGGCCTACTACCACGCAGACGGCCTCCTCTACACCGCCTCCCTCGACAAGACCGTCAAAGCCTGGCGAATCTCCGACCGCAGATGCGTTGACTCCTTCCTCGCCCACGAAGACAAAGTCAACTCCATAACCCTCAACCAGAACGACGGCTGCCTCTTCACCTGCTCCTCCGACGGCACCGTCAAGATCTGGCGAAGGCTATACCGAGAGAACTCCCACACCCTCACCATGACACTCAAGTTCCAGACCTCCCCTGTGAACGCCGTCGTTTTGAGCTGCCACCACGACGCCACCTTCCTCTACTCGGGCTCCTCCGACGGGACCATCAACTTCTGGGAAAAGGAGAAGCTTTCTTACAGGTACAACCACGGCGGGTTCCTGCAAGGCCACAGATTTGGGGTGCTGTGCTTGGCGGTGGTGGAGAGGCTGGTGCTGAGTGGGTCGGAGGACACGACGGTGAGGATATGGCGGAAGGAGGAGGGGGGCTGTTTCCACGAGTGCTTGGCGGTGCTGGATGGGCACAGAGGGCCGGTGAGATGCGTGGCGGGGAGCTTGGAGATGGAGAAGATGGAGATGAGCTTTTTGGTTTATAGTGGGAGTTTGGACCAGTCGTTTAAGGTGTGGAGAGTGAAGGTGGTGGCGGGTAGTGATGAGGAGAAGAAGAATGGATTGTTGGAGTGTGGGGACAGTGGGGATTTCAAGATGAAGAAGCTCTATGAGATGAGCCCTGTGTTGTCTCCTTCTTGGGTTGAGAAAAAGCTTCAAGCTAACTATTTTTAA

mRNA sequence

ATGCATGCCAATATAATTCCCGATGCCATGGCCTTCCGTTCCAACAAGTCTTTACTCAGCATAATGGTCGACGACGATGAAAAACAAACGACGACGGCACAAATAATCGATTCCCAAAAGGATTGTGGGGATTTCAAGATGAAGAAGCTCTATGAGATGAGCCCTGTGTTGTCTCCTTCTTGGGTTGAGAAAAAGCTTCAAGCTAACTATTTTTAA

Coding sequence (CDS)

ATGCATGCCAATATAATTCCCGATGCCATGGCCTTCCGTTCCAACAAGTCTTTACTCAGCATAATGGTCGACGACGATGAAAAACAAACGACGACGGCACAAATAATCGATTCCCAAAAGGATTGTGGGGATTTCAAGATGAAGAAGCTCTATGAGATGAGCCCTGTGTTGTCTCCTTCTTGGGTTGAGAAAAAGCTTCAAGCTAACTATTTTTAA

Protein sequence

MHANIIPDAMAFRSNKSLLSIMVDDDEKQTTTAQIIDSQKDCGDFKMKKLYEMSPVLSPSWVEKKLQANYF
Homology
[Close]
BLAST of Spg016326 vs. NCBI nr
Match: XP_008466650.1 (PREDICTED: F-box/WD repeat-containing protein sel-10-like [Cucumis melo])

HSP 1 Score: 54.3 bits (129), Expect = 5.0e-04
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 44  DFKMKKLYEMSPVLSPSWVEKKLQANYF 72
           D KMKKLYE SPVLSPSWV+KKLQ NYF
Sbjct: 119 DLKMKKLYETSPVLSPSWVQKKLQPNYF 146

[Close]
BLAST of Spg016326 vs. NCBI nr
Match: XP_022981716.1 (protein JINGUBANG-like [Cucurbita maxima])

HSP 1 Score: 54.3 bits (129), Expect = 5.0e-04
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 35  IIDSQKDCGDFKMKKLYEMSPVLSPSWVEKKLQANYF 72
           + + + + GD KM KLYEMSPVLSPSWVEKKLQA+ +
Sbjct: 269 LAEEENNGGDLKMNKLYEMSPVLSPSWVEKKLQASNY 305

[Close]
BLAST of Spg016326 vs. NCBI nr
Match: XP_022941463.1 (protein JINGUBANG-like [Cucurbita moschata])

HSP 1 Score: 54.3 bits (129), Expect = 5.0e-04
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 35  IIDSQKDCGDFKMKKLYEMSPVLSPSWVEKKLQANYF 72
           + + + + GD KM KLYEMSPVLSPSWVEKKLQA+ +
Sbjct: 269 LAEEENNGGDLKMNKLYEMSPVLSPSWVEKKLQASNY 305

[Close]
BLAST of Spg016326 vs. NCBI nr
Match: KAG7031724.1 (Protein JINGUBANG, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 54.3 bits (129), Expect = 5.0e-04
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 35  IIDSQKDCGDFKMKKLYEMSPVLSPSWVEKKLQANYF 72
           + + + + GD KM KLYEMSPVLSPSWVEKKLQA+ +
Sbjct: 886 LAEEENNGGDLKMNKLYEMSPVLSPSWVEKKLQASNY 922

[Close]
BLAST of Spg016326 vs. NCBI nr
Match: KAG6608090.1 (Protein JINGUBANG, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.3 bits (129), Expect = 5.0e-04
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 35  IIDSQKDCGDFKMKKLYEMSPVLSPSWVEKKLQANYF 72
           + + + + GD KM KLYEMSPVLSPSWVEKKLQA+ +
Sbjct: 401 LAEEENNGGDLKMNKLYEMSPVLSPSWVEKKLQASNY 437

[Close]
BLAST of Spg016326 vs. ExPASy TrEMBL
Match: A0A6J1IXB8 (protein JINGUBANG-like OS=Cucurbita maxima OX=3661 GN=LOC111480780 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 35  IIDSQKDCGDFKMKKLYEMSPVLSPSWVEKKLQANYF 72
           + + + + GD KM KLYEMSPVLSPSWVEKKLQA+ +
Sbjct: 269 LAEEENNGGDLKMNKLYEMSPVLSPSWVEKKLQASNY 305

[Close]
BLAST of Spg016326 vs. ExPASy TrEMBL
Match: A0A6J1FS64 (protein JINGUBANG-like OS=Cucurbita moschata OX=3662 GN=LOC111446752 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 35  IIDSQKDCGDFKMKKLYEMSPVLSPSWVEKKLQANYF 72
           + + + + GD KM KLYEMSPVLSPSWVEKKLQA+ +
Sbjct: 269 LAEEENNGGDLKMNKLYEMSPVLSPSWVEKKLQASNY 305

[Close]
BLAST of Spg016326 vs. ExPASy TrEMBL
Match: A0A1S3CRS7 (F-box/WD repeat-containing protein sel-10-like OS=Cucumis melo OX=3656 GN=LOC103504006 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 44  DFKMKKLYEMSPVLSPSWVEKKLQANYF 72
           D KMKKLYE SPVLSPSWV+KKLQ NYF
Sbjct: 119 DLKMKKLYETSPVLSPSWVQKKLQPNYF 146

The following BLAST results are available for this feature:
BLAST of Spg016326 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008466650.15.0e-0485.71PREDICTED: F-box/WD repeat-containing protein sel-10-like [Cucumis melo][more]
XP_022981716.15.0e-0464.86protein JINGUBANG-like [Cucurbita maxima][more]
XP_022941463.15.0e-0464.86protein JINGUBANG-like [Cucurbita moschata][more]
KAG7031724.15.0e-0464.86Protein JINGUBANG, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6608090.15.0e-0464.86Protein JINGUBANG, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Spg016326 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg016326 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IXB82.4e-0464.86protein JINGUBANG-like OS=Cucurbita maxima OX=3661 GN=LOC111480780 PE=4 SV=1[more]
A0A6J1FS642.4e-0464.86protein JINGUBANG-like OS=Cucurbita moschata OX=3662 GN=LOC111446752 PE=4 SV=1[more]
A0A1S3CRS72.4e-0485.71F-box/WD repeat-containing protein sel-10-like OS=Cucumis melo OX=3656 GN=LOC103... [more]
BLAST of Spg016326 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg016326.1Spg016326.1mRNA