Spg014151 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg014151
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	scaffold3: 47718003 .. 47718772 (-)
RNA-Seq Expression	Spg014151
Synteny	Spg014151

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAGGTGTCACATATGTTTGATTTTTAGTGATGGTTTCTTTCCTTTTTTGTGTGTTTTGTACAATGGAAATTTCTTTTTACTTTGGTTTTGATTCCTTTTGTTTTTATATATGTTTGTTTTGTCATTGTTCATAATTGTTGGAAAGAAACAAATATAGACATCGTTTGTGCCAATTTTTTAATCGTAGTGAATTATTTTTTTCCGTTTATGGTTTTTCTTAGTGAAGGATTTTTTCTTTTTTCATGATTTTTTTTCTTCTTTTCATTTTATTTTTTCCCTTTGCCATCTATTATTGTCCTTTTTCAATAGAGAGAGTTTGGTGAATTTGAATAAGCTAGAATGGAGGGAGGGAGGCTATCATGATAGGTTTTTTTTGGTTGCCGCGATAAAATATTTCATATATGTGTCATCCAAAATCAAGGCTAAAGTGATGTCGCTATGGACCATCTTTTTCTTGATTGTGATGTCGCTAGCCTTTTCTGGAACCAGCTGTTCGAAGCTAGAGGTATAATCTCTTCAAGACCTTATCAGATTCAGACGTTCAGTGTTGAACTTCTTGCCATCAAACCAAAGTCTCAGAAAGATATTCTTTTTCAGAATATTTTTGTTGCTTCTATTTGGATCAAAAGAAATAGTCGCATCTTCAAGGACAAGGATCGTTCAGTAGCTCAGTTTTGGGAGGATATTATAGCTCTTGCTGCTTTCTGGTCTTCATCTTCTGATCTCTTTTCCAACTATGAAGCGTCTTCCATTTCTCTTAATTAA

mRNA sequence

ATGCTGTTCGAAGCTAGAGGTATAATCTCTTCAAGACCTTATCAGATTCAGACGTTCAGTGTTGAACTTCTTGCCATCAAACCAAAGTCTCAGAAAGATATTCTTTTTCAGAATATTTTTGTTGCTTCTATTTGGATCAAAAGAAATAGTCGCATCTTCAAGGACAAGGATCGTTCAGTAGCTCAGTTTTGGGAGGATATTATAGCTCTTGCTGCTTTCTGGTCTTCATCTTCTGATCTCTTTTCCAACTATGAAGCGTCTTCCATTTCTCTTAATTAA

Coding sequence (CDS)

ATGCTGTTCGAAGCTAGAGGTATAATCTCTTCAAGACCTTATCAGATTCAGACGTTCAGTGTTGAACTTCTTGCCATCAAACCAAAGTCTCAGAAAGATATTCTTTTTCAGAATATTTTTGTTGCTTCTATTTGGATCAAAAGAAATAGTCGCATCTTCAAGGACAAGGATCGTTCAGTAGCTCAGTTTTGGGAGGATATTATAGCTCTTGCTGCTTTCTGGTCTTCATCTTCTGATCTCTTTTCCAACTATGAAGCGTCTTCCATTTCTCTTAATTAA

Protein sequence

MLFEARGIISSRPYQIQTFSVELLAIKPKSQKDILFQNIFVASIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSSSDLFSNYEASSISLN

Homology

[Close]

BLAST of Spg014151 vs. NCBI nr
Match: KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 21  VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
           + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 465 ITMCSWKQKTKKNVILYNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 524

Query: 81  SDLFSNYEASSISLN 93
           S LFSNY+ASSI+LN
Sbjct: 525 SSLFSNYQASSIALN 539

[Close]

BLAST of Spg014151 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 21   VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
            + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 1041 ITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 1100

Query: 81   SDLFSNYEASSISLN 93
            S LFSNY+ASSI+LN
Sbjct: 1101 SSLFSNYQASSIALN 1115

[Close]

BLAST of Spg014151 vs. NCBI nr
Match: TYK14764.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 21  VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
           + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 168 ITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 227

Query: 81  SDLFSNYEASSISLN 93
           S LFSNY+ASSI+LN
Sbjct: 228 SSLFSNYQASSIALN 242

[Close]

BLAST of Spg014151 vs. NCBI nr
Match: XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 21   VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
            + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 978  ITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 1037

Query: 81   SDLFSNYEASSISLN 93
            S LFSNY+ASSI+LN
Sbjct: 1038 SSLFSNYQASSIALN 1052

[Close]

BLAST of Spg014151 vs. NCBI nr
Match: KAA0039770.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24727.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 21   VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
            + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 978  ITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 1037

Query: 81   SDLFSNYEASSISLN 93
            S LFSNY+ASSI+LN
Sbjct: 1038 SSLFSNYQASSIALN 1052

[Close]

BLAST of Spg014151 vs. ExPASy TrEMBL
Match: A0A5A7TES3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00040 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.7e-11
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 21  VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
           + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 465 ITMCSWKQKTKKNVILYNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 524

Query: 81  SDLFSNYEASSISLN 93
           S LFSNY+ASSI+LN
Sbjct: 525 SSLFSNYQASSIALN 539

[Close]

BLAST of Spg014151 vs. ExPASy TrEMBL
Match: A0A5D3DM72 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002870 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 21   VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
            + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 978  ITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 1037

Query: 81   SDLFSNYEASSISLN 93
            S LFSNY+ASSI+LN
Sbjct: 1038 SSLFSNYQASSIALN 1052

[Close]

BLAST of Spg014151 vs. ExPASy TrEMBL
Match: A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 21   VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
            + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 1041 ITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 1100

Query: 81   SDLFSNYEASSISLN 93
            S LFSNY+ASSI+LN
Sbjct: 1101 SSLFSNYQASSIALN 1115

[Close]

BLAST of Spg014151 vs. ExPASy TrEMBL
Match: A0A5D3CUY9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46132G00010 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 21  VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
           + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 168 ITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 227

Query: 81  SDLFSNYEASSISLN 93
           S LFSNY+ASSI+LN
Sbjct: 228 SSLFSNYQASSIALN 242

[Close]

BLAST of Spg014151 vs. ExPASy TrEMBL
Match: A0A5D3CPL6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold34842G00010 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 21  VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
           + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 168 ITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 227

Query: 81  SDLFSNYEASSISLN 93
           S LFSNY+ASSI+LN
Sbjct: 228 SSLFSNYQASSIALN 242

The following BLAST results are available for this feature:

BLAST of Spg014151 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040037.1	1.6e-10	46.67	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK06777.1	2.7e-10	46.67	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK14764.1	2.7e-10	46.67	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
XP_016902461.1	2.7e-10	46.67	PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]	[more]
KAA0039770.1	2.7e-10	46.67	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK247...	[more]

BLAST of Spg014151 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg014151 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TES3	7.7e-11	46.67	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3DM72	1.3e-10	46.67	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C4J1	1.3e-10	46.67	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3CUY9	1.3e-10	46.67	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3CPL6	1.3e-10	46.67	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Spg014151 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg014151.1	Spg014151.1	mRNA