Spg014151 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg014151
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationscaffold3: 47718003 .. 47718772 (-)
RNA-Seq ExpressionSpg014151
SyntenySpg014151
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAGGTGTCACATATGTTTGATTTTTAGTGATGGTTTCTTTCCTTTTTTGTGTGTTTTGTACAATGGAAATTTCTTTTTACTTTGGTTTTGATTCCTTTTGTTTTTATATATGTTTGTTTTGTCATTGTTCATAATTGTTGGAAAGAAACAAATATAGACATCGTTTGTGCCAATTTTTTAATCGTAGTGAATTATTTTTTTCCGTTTATGGTTTTTCTTAGTGAAGGATTTTTTCTTTTTTCATGATTTTTTTTCTTCTTTTCATTTTATTTTTTCCCTTTGCCATCTATTATTGTCCTTTTTCAATAGAGAGAGTTTGGTGAATTTGAATAAGCTAGAATGGAGGGAGGGAGGCTATCATGATAGGTTTTTTTTGGTTGCCGCGATAAAATATTTCATATATGTGTCATCCAAAATCAAGGCTAAAGTGATGTCGCTATGGACCATCTTTTTCTTGATTGTGATGTCGCTAGCCTTTTCTGGAACCAGCTGTTCGAAGCTAGAGGTATAATCTCTTCAAGACCTTATCAGATTCAGACGTTCAGTGTTGAACTTCTTGCCATCAAACCAAAGTCTCAGAAAGATATTCTTTTTCAGAATATTTTTGTTGCTTCTATTTGGATCAAAAGAAATAGTCGCATCTTCAAGGACAAGGATCGTTCAGTAGCTCAGTTTTGGGAGGATATTATAGCTCTTGCTGCTTTCTGGTCTTCATCTTCTGATCTCTTTTCCAACTATGAAGCGTCTTCCATTTCTCTTAATTAA

mRNA sequence

ATGCTGTTCGAAGCTAGAGGTATAATCTCTTCAAGACCTTATCAGATTCAGACGTTCAGTGTTGAACTTCTTGCCATCAAACCAAAGTCTCAGAAAGATATTCTTTTTCAGAATATTTTTGTTGCTTCTATTTGGATCAAAAGAAATAGTCGCATCTTCAAGGACAAGGATCGTTCAGTAGCTCAGTTTTGGGAGGATATTATAGCTCTTGCTGCTTTCTGGTCTTCATCTTCTGATCTCTTTTCCAACTATGAAGCGTCTTCCATTTCTCTTAATTAA

Coding sequence (CDS)

ATGCTGTTCGAAGCTAGAGGTATAATCTCTTCAAGACCTTATCAGATTCAGACGTTCAGTGTTGAACTTCTTGCCATCAAACCAAAGTCTCAGAAAGATATTCTTTTTCAGAATATTTTTGTTGCTTCTATTTGGATCAAAAGAAATAGTCGCATCTTCAAGGACAAGGATCGTTCAGTAGCTCAGTTTTGGGAGGATATTATAGCTCTTGCTGCTTTCTGGTCTTCATCTTCTGATCTCTTTTCCAACTATGAAGCGTCTTCCATTTCTCTTAATTAA

Protein sequence

MLFEARGIISSRPYQIQTFSVELLAIKPKSQKDILFQNIFVASIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSSSDLFSNYEASSISLN
Homology
[Close]
BLAST of Spg014151 vs. NCBI nr
Match: KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 21  VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
           + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 465 ITMCSWKQKTKKNVILYNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 524

Query: 81  SDLFSNYEASSISLN 93
           S LFSNY+ASSI+LN
Sbjct: 525 SSLFSNYQASSIALN 539

[Close]
BLAST of Spg014151 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 21   VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
            + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 1041 ITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 1100

Query: 81   SDLFSNYEASSISLN 93
            S LFSNY+ASSI+LN
Sbjct: 1101 SSLFSNYQASSIALN 1115

[Close]
BLAST of Spg014151 vs. NCBI nr
Match: TYK14764.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 21  VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
           + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 168 ITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 227

Query: 81  SDLFSNYEASSISLN 93
           S LFSNY+ASSI+LN
Sbjct: 228 SSLFSNYQASSIALN 242

[Close]
BLAST of Spg014151 vs. NCBI nr
Match: XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 21   VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
            + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 978  ITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 1037

Query: 81   SDLFSNYEASSISLN 93
            S LFSNY+ASSI+LN
Sbjct: 1038 SSLFSNYQASSIALN 1052

[Close]
BLAST of Spg014151 vs. NCBI nr
Match: KAA0039770.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24727.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 21   VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
            + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 978  ITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 1037

Query: 81   SDLFSNYEASSISLN 93
            S LFSNY+ASSI+LN
Sbjct: 1038 SSLFSNYQASSIALN 1052

[Close]
BLAST of Spg014151 vs. ExPASy TrEMBL
Match: A0A5A7TES3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00040 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.7e-11
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 21  VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
           + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 465 ITMCSWKQKTKKNVILYNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 524

Query: 81  SDLFSNYEASSISLN 93
           S LFSNY+ASSI+LN
Sbjct: 525 SSLFSNYQASSIALN 539

[Close]
BLAST of Spg014151 vs. ExPASy TrEMBL
Match: A0A5D3DM72 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002870 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 21   VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
            + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 978  ITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 1037

Query: 81   SDLFSNYEASSISLN 93
            S LFSNY+ASSI+LN
Sbjct: 1038 SSLFSNYQASSIALN 1052

[Close]
BLAST of Spg014151 vs. ExPASy TrEMBL
Match: A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 21   VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
            + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 1041 ITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 1100

Query: 81   SDLFSNYEASSISLN 93
            S LFSNY+ASSI+LN
Sbjct: 1101 SSLFSNYQASSIALN 1115

[Close]
BLAST of Spg014151 vs. ExPASy TrEMBL
Match: A0A5D3CUY9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46132G00010 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 21  VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
           + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 168 ITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 227

Query: 81  SDLFSNYEASSISLN 93
           S LFSNY+ASSI+LN
Sbjct: 228 SSLFSNYQASSIALN 242

[Close]
BLAST of Spg014151 vs. ExPASy TrEMBL
Match: A0A5D3CPL6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold34842G00010 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 35/75 (46.67%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 21  VELLAIKPKSQKDILFQNIFVA---SIWIKRNSRIFKDKDRSVAQFWEDIIALAAFWSSS 80
           + + + K K++K+++  N + +   +IW++RN+RIF  K+++VA+ WEDI ALA  W+S 
Sbjct: 168 ITMCSWKQKTKKNVILFNTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSR 227

Query: 81  SDLFSNYEASSISLN 93
           S LFSNY+ASSI+LN
Sbjct: 228 SSLFSNYQASSIALN 242

The following BLAST results are available for this feature:
BLAST of Spg014151 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040037.11.6e-1046.67LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK06777.12.7e-1046.67LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK14764.12.7e-1046.67LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
XP_016902461.12.7e-1046.67PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo][more]
KAA0039770.12.7e-1046.67LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK247... [more]
BLAST of Spg014151 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg014151 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TES37.7e-1146.67LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3DM721.3e-1046.67LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3C4J11.3e-1046.67LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3CUY91.3e-1046.67LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3CPL61.3e-1046.67LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of Spg014151 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg014151.1Spg014151.1mRNA