Spg011018 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg011018
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold4: 28675422 .. 28678883 (+)
RNA-Seq Expression	Spg011018
Synteny	Spg011018

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTACTGCCCATTGTTGCTTCAATGAATTGAGGTTGCAAGAAGATAAAGCTTCTATTATTGCAAGCGAAGAAACAACATTGCAGGGGGCATGTACCAACGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTAATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGAGTCAAATTGAGAACCAACATATCGTTGAATGAAGTCAAACCCAAGTCATAAAAAAACATGACAAAGGAAAGACTATAGTGCAAGATGATCAGCCACAGTGTTCTACTTCGGTCGCTTCACTATCCATCCTACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAATGCCAATCGGGTATCAGCCACCAAAGTTTCAACAATTCGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAGCAGTTCATTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCAATAGACAGTTGGGAGGAACTCGAATGAGAGTTTTTGAATCGTTTCTACTACACTAGACGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGCCATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCTTTAAAGGTATAAAGCCTCGCACCTTTGAAGAACTAGCAACTTGCGCCCATGATATGAAGCTAAGTATTGCTAGTCGAGAAAACCAAGACCTTATACTCCCTAACATGAGGAAAGAAGAAAGGAACGACGAAGAGACTATAGAAAAATCTATGGTTGTAAACACAACCCTTCCCAAGTCGTCGTCAAAAGAAAAACGACAAACAAATGGAACGCATCACTCAACTTTAAAGGAAAGACAGAAGAAAATCTATCCTTTCCCTGAGGCCGACATCCCTGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGCTTCCTAAATGTAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTCTAAAGCTAGCTATGGAAGGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAACAAGCATCAAAGAAAGAATGATCTTAAGAAACTTCAACCCAAGAGGTAAAGAAGTAAAAAGTTTTCTCAACCTCGACAACCGATGACTGCGAAGGAACTCTTCTCCAAAACTTTCCACAAAAAGGAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAATGATGAACAAAGGACTTCCGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGACCGCGACAGAAAAAGAAAATCAATGTCCGATGTCCACATCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGGCCTTCAACATCTGTTTTTGATCGCCTTAAAGTAACAAACAACCAACCTAAAAGAAAGATGGACAACTTGAAGGTGAGACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTATAAATGAAGGATCTGATCAAGACCATGATAAAGATAAGAGCTTTTAAAATGTAAAAACTCCTTATCGTAAGAGTCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAAATCCTGAACTACGTTATGACTTGATCCCTATTCCTCAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTTTATAAAAAAAAGAAAGTGCGACAAATATTGAAGCACAACAATATAAATCGAGAAAATTCATCACTAATGGGGGCAACACAGTAAATGGAGGTTATGCACCGTTATGAATGTGAAGCTACGAGTTGGATGAATAAAAGAAAACTTCATTCCTCCAAGTTCAATGTCTCGCTAGCCTCAAGTTCGGTGTTTCACTCACCCTATGTTTCGTTGTTCCTTCTCCAATTCGAAGGTTCTCACGCTGCGCTACTTCCTTCTTTAAGTTTGAAGGTTCCCACGTTGCGCTATTGTGCTCCTTCCTTCTCCAAGTTCGAAGGTTCTGACGTTGCGTTGCTTCCTTCACCAAGTTCGAAAGTTCTGACGTTGCACTGCTTCCTTCTCCAAGTTTGAAGGTTTTCATGTCACGCTGCTTCGTTGCTCATTCTCCAAGTCCGAAGGTTTGCATGTTTTTTTTTACGCTGCTTCGCTGCAGTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGGGTTCTCACACTGCCTCGCTGCAATTCCTTCCTCCAAGTTTGAAGGGGTTCTCATGCAGTGCCTTCCTCCAAGTTCGAAGGTTCTCATGCTGCTTCTTCCTCATATTGCTTCGCTACAGTTCCTTCCTCCGAAGGTTCTAACGCTGCTTCTGCTTCCTCACGTTGCTTTGTTGTTGTAACATCTCTAAATTCAAAGGTTCTCACGCTACGTTATTTGAAGTTCCTTCATCTTACACTGCATTGCATCGCTGTTCCTTCAACAAGTTCGAAGGTTTTTACGTTGAAGCAGTAAATGAGCCCAAGTGGGAATGACATCATGTGTCTTTGGGCCGAGGGACGTCGTAACAACAAAAGTCCAAAGGCGTCAATTGTCCTTGCACTCATGCTGAAAGACGTGGCAGCGACAAAAGTCCAAGGAACATGTCCTTGTACTCATGCTGAAAGACGTGACAGCGGCAAAAGTTCAAGGAACATGTCCTGTACTCATGCTGAACGACGTGACAGCGGCAAAAGTCCAAGGAACATGTCCTTGTACTCATGCTGAAAGACATGGCAGCGGTAAAGGAGCCCAAGTGGGAATGACATCATGTGTCCTTGGGCCAGAGGGCGTCGTAGCAACAAAAGTCCAAAGACGTCATATGTCCTTGGATTAA

mRNA sequence

ATGGGTTCTACTGCCCATTGTTGCTTCAATGAATTGAGGTTGCAAGAAGATAAAGCTTCTATTATTGCAAGCGAAGAAACAACATTGCAGGGGGCATGTACCAACGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTAATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGAGAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAATGATGAACAAAGGACTTCCGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGACCGCGACAGAAAAAGAAAATCAATGTCCGATGTCCACATCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGGCCTTCAACATCTGTTTTTGATCGCCTTAAAGTAACAAACAACCAACCTAAAAGAAAGATGGACAACTTGAAGGTGAGACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTTCCCACGTTGCGCTATTGTGCTCCTTCCTTCTCCAAGTTCGAAGGTTCTGACGTTGCGTTGCTTCCTTCACCAAGTTCGAAAGTTCTGACTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCTTCCTCCAATGCCTTCCTCCAAGTTCGAAGGTTCTCATGCTGCTTCTTCCTCATATTGCTTCGCTACAGTTCCTTCCTCCGAAGGTTCTAACGCTGCTTCTGCTTCCTCACGTTGCTTTGTTGTTGTAACATCTCTAAATTCAAAGGTTCTCACGCTACGTTATTTGAAGTTCCTTCATCTTACACTGCATTGCATCGCTGTTCCTTCAACAAGTTCGAAGCGACAAAAGTCCAAGGAACATGTCCTTGTACTCATGCTGAAAGACGTGACAGCGGCAAAAGTTCAAGGAACATGTCCTGTACTCATGCTGAACGACGTGACAGCGGCAAAAGTCCAAGGAACATGTCCTTGTACTCATGCTGAAAGACATGGCAGCGGTAAAGGAGCCCAAGTGGGAATGACATCATGTGTCCTTGGGCCAGAGGGCGTCGTAGCAACAAAAGTCCAAAGACGTCATATGTCCTTGGATTAA

Coding sequence (CDS)

ATGGGTTCTACTGCCCATTGTTGCTTCAATGAATTGAGGTTGCAAGAAGATAAAGCTTCTATTATTGCAAGCGAAGAAACAACATTGCAGGGGGCATGTACCAACGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTAATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGAGAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAATGATGAACAAAGGACTTCCGTCTTCGATCGCATCAAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGACCGCGACAGAAAAAGAAAATCAATGTCCGATGTCCACATCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGGCCTTCAACATCTGTTTTTGATCGCCTTAAAGTAACAAACAACCAACCTAAAAGAAAGATGGACAACTTGAAGGTGAGACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTTCCCACGTTGCGCTATTGTGCTCCTTCCTTCTCCAAGTTCGAAGGTTCTGACGTTGCGTTGCTTCCTTCACCAAGTTCGAAAGTTCTGACTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCTTCCTCCAATGCCTTCCTCCAAGTTCGAAGGTTCTCATGCTGCTTCTTCCTCATATTGCTTCGCTACAGTTCCTTCCTCCGAAGGTTCTAACGCTGCTTCTGCTTCCTCACGTTGCTTTGTTGTTGTAACATCTCTAAATTCAAAGGTTCTCACGCTACGTTATTTGAAGTTCCTTCATCTTACACTGCATTGCATCGCTGTTCCTTCAACAAGTTCGAAGCGACAAAAGTCCAAGGAACATGTCCTTGTACTCATGCTGAAAGACGTGACAGCGGCAAAAGTTCAAGGAACATGTCCTGTACTCATGCTGAACGACGTGACAGCGGCAAAAGTCCAAGGAACATGTCCTTGTACTCATGCTGAAAGACATGGCAGCGGTAAAGGAGCCCAAGTGGGAATGACATCATGTGTCCTTGGGCCAGAGGGCGTCGTAGCAACAAAAGTCCAAAGACGTCATATGTCCTTGGATTAA

Protein sequence

MGSTAHCCFNELRLQEDKASIIASEETTLQGACTNDKFLVKYNPLFEPNSDVVTVMMTETRTMEERMAEMQEHINTLMKAIEEKDSQIEHLKRKENFATSYCIDVEEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNNDKKLHSSIPSRMKRKFSVLINTEGSLKVPTLRYCAPSFSKFEGSDVALLPSPSSKVLTSFSKFEGSHVASLQFLLSKFEGSHAASLQFLPPMPSSKFEGSHAASSSYCFATVPSSEGSNAASASSRCFVVVTSLNSKVLTLRYLKFLHLTLHCIAVPSTSSKRQKSKEHVLVLMLKDVTAAKVQGTCPVLMLNDVTAAKVQGTCPCTHAERHGSGKGAQVGMTSCVLGPEGVVATKVQRRHMSLD

Homology

[Close]

BLAST of Spg011018 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 1.8e-35
Identity = 88/127 (69.29%), Postives = 102/127 (80.31%), Query Frame = 0


Query: 106 EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVS 165
           EEVDNS   +QRTSVFDRIKP TTR SVFQR+SM   E+ENQCP ST  R SAF+RLS+S
Sbjct: 120 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 179

Query: 166 TSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNNDKKLHSSIPSRMKRKFSVLIN 225
           TSKK RPSTS FDRLK+TN+Q +R+M +LK + F E N+D K+HS +PSRMKRK SV IN
Sbjct: 180 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDIN 239

Query: 226 TEGSLKV 233
           TEGSL V
Sbjct: 240 TEGSLTV 246

[Close]

BLAST of Spg011018 vs. NCBI nr
Match: TYK16519.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 1.8e-35
Identity = 88/127 (69.29%), Postives = 100/127 (78.74%), Query Frame = 0


Query: 106 EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVS 165
           EEVDNS   +QRTSVFDRIKP TTR  VFQR+SM   E+ENQCP ST  R SAF+RLS+S
Sbjct: 391 EEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 450

Query: 166 TSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNNDKKLHSSIPSRMKRKFSVLIN 225
           TSKK RPSTS FDRLK+TNNQ KR+M + K + F E N+D K+HS +PSRMKRK SV IN
Sbjct: 451 TSKKHRPSTSAFDRLKMTNNQQKREMKSFKAKPFHEQNDDNKIHSRVPSRMKRKLSVDIN 510

Query: 226 TEGSLKV 233
           TEGSL V
Sbjct: 511 TEGSLTV 517

[Close]

BLAST of Spg011018 vs. NCBI nr
Match: KAA0040811.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 3.1e-35
Identity = 88/127 (69.29%), Postives = 103/127 (81.10%), Query Frame = 0


Query: 106 EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVS 165
           EEVDNS   +QRTSVFDRIKP TTR SVFQR+S+T  E+ENQCP ST TR SAF+ LS+S
Sbjct: 463 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSITTKEEENQCPTSTCTRTSAFKSLSIS 522

Query: 166 TSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNNDKKLHSSIPSRMKRKFSVLIN 225
           TSKK RPSTS FDRLK+ N+Q +R+M +LKV+ F E N+D K+HS +PSRMKRK SV IN
Sbjct: 523 TSKKDRPSTSAFDRLKMINDQQQREMKSLKVKPFHEENDDDKIHSRVPSRMKRKLSVDIN 582

Query: 226 TEGSLKV 233
           TEGSL V
Sbjct: 583 TEGSLIV 589

[Close]

BLAST of Spg011018 vs. NCBI nr
Match: KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 5.3e-35
Identity = 87/127 (68.50%), Postives = 101/127 (79.53%), Query Frame = 0


Query: 106 EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVS 165
           EEVDNS   +QRTSVFDRIKP TTR  VFQR+SM   E+ENQCPMST  R SAF+RLS+S
Sbjct: 61  EEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPMSTYARTSAFKRLSIS 120

Query: 166 TSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNNDKKLHSSIPSRMKRKFSVLIN 225
           TSKK RPSTS FDRLK+TN+Q +R+M + K + F E N+D K+HS +PSRMKRK SV IN
Sbjct: 121 TSKKHRPSTSAFDRLKMTNDQQQREMKSFKAKPFHEENDDDKIHSRVPSRMKRKLSVDIN 180

Query: 226 TEGSLKV 233
           TEGSL V
Sbjct: 181 TEGSLTV 187

[Close]

BLAST of Spg011018 vs. NCBI nr
Match: KAA0050736.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 9.1e-35
Identity = 86/127 (67.72%), Postives = 103/127 (81.10%), Query Frame = 0


Query: 106 EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVS 165
           EEVDNS   +QRTSVFDRIKP TTR SVFQR+SM   E+ENQCPMST TR SAF+RLS+S
Sbjct: 371 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPMSTYTRTSAFKRLSIS 430

Query: 166 TSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNNDKKLHSSIPSRMKRKFSVLIN 225
            SKK RPSTS FDRLK+TN+Q +R+M +LK + F E N+D K++S +PSR+KRK S+ IN
Sbjct: 431 RSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIYSRVPSRIKRKLSIDIN 490

Query: 226 TEGSLKV 233
           TEGSL V
Sbjct: 491 TEGSLTV 497

[Close]

BLAST of Spg011018 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.9e-36
Identity = 88/127 (69.29%), Postives = 102/127 (80.31%), Query Frame = 0


Query: 106 EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVS 165
           EEVDNS   +QRTSVFDRIKP TTR SVFQR+SM   E+ENQCP ST  R SAF+RLS+S
Sbjct: 120 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 179

Query: 166 TSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNNDKKLHSSIPSRMKRKFSVLIN 225
           TSKK RPSTS FDRLK+TN+Q +R+M +LK + F E N+D K+HS +PSRMKRK SV IN
Sbjct: 180 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDIN 239

Query: 226 TEGSLKV 233
           TEGSL V
Sbjct: 240 TEGSLTV 246

[Close]

BLAST of Spg011018 vs. ExPASy TrEMBL
Match: A0A5D3D209 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003310 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.9e-36
Identity = 88/127 (69.29%), Postives = 100/127 (78.74%), Query Frame = 0


Query: 106 EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVS 165
           EEVDNS   +QRTSVFDRIKP TTR  VFQR+SM   E+ENQCP ST  R SAF+RLS+S
Sbjct: 391 EEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 450

Query: 166 TSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNNDKKLHSSIPSRMKRKFSVLIN 225
           TSKK RPSTS FDRLK+TNNQ KR+M + K + F E N+D K+HS +PSRMKRK SV IN
Sbjct: 451 TSKKHRPSTSAFDRLKMTNNQQKREMKSFKAKPFHEQNDDNKIHSRVPSRMKRKLSVDIN 510

Query: 226 TEGSLKV 233
           TEGSL V
Sbjct: 511 TEGSLTV 517

[Close]

BLAST of Spg011018 vs. ExPASy TrEMBL
Match: A0A5A7TGM1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00260 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-35
Identity = 88/127 (69.29%), Postives = 103/127 (81.10%), Query Frame = 0


Query: 106 EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVS 165
           EEVDNS   +QRTSVFDRIKP TTR SVFQR+S+T  E+ENQCP ST TR SAF+ LS+S
Sbjct: 463 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSITTKEEENQCPTSTCTRTSAFKSLSIS 522

Query: 166 TSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNNDKKLHSSIPSRMKRKFSVLIN 225
           TSKK RPSTS FDRLK+ N+Q +R+M +LKV+ F E N+D K+HS +PSRMKRK SV IN
Sbjct: 523 TSKKDRPSTSAFDRLKMINDQQQREMKSLKVKPFHEENDDDKIHSRVPSRMKRKLSVDIN 582

Query: 226 TEGSLKV 233
           TEGSL V
Sbjct: 583 TEGSLIV 589

[Close]

BLAST of Spg011018 vs. ExPASy TrEMBL
Match: A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.6e-35
Identity = 87/127 (68.50%), Postives = 101/127 (79.53%), Query Frame = 0


Query: 106 EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVS 165
           EEVDNS   +QRTSVFDRIKP TTR  VFQR+SM   E+ENQCPMST  R SAF+RLS+S
Sbjct: 61  EEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPMSTYARTSAFKRLSIS 120

Query: 166 TSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNNDKKLHSSIPSRMKRKFSVLIN 225
           TSKK RPSTS FDRLK+TN+Q +R+M + K + F E N+D K+HS +PSRMKRK SV IN
Sbjct: 121 TSKKHRPSTSAFDRLKMTNDQQQREMKSFKAKPFHEENDDDKIHSRVPSRMKRKLSVDIN 180

Query: 226 TEGSLKV 233
           TEGSL V
Sbjct: 181 TEGSLTV 187

[Close]

BLAST of Spg011018 vs. ExPASy TrEMBL
Match: A0A5A7U974 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00280 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.4e-35
Identity = 86/127 (67.72%), Postives = 103/127 (81.10%), Query Frame = 0


Query: 106 EEVDNSKNDEQRTSVFDRIKPSTTRPSVFQRMSMTATEKENQCPMSTSTRPSAFQRLSVS 165
           EEVDNS   +QRTSVFDRIKP TTR SVFQR+SM   E+ENQCPMST TR SAF+RLS+S
Sbjct: 371 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPMSTYTRTSAFKRLSIS 430

Query: 166 TSKKSRPSTSVFDRLKVTNNQPKRKMDNLKVRLFDEVNNDKKLHSSIPSRMKRKFSVLIN 225
            SKK RPSTS FDRLK+TN+Q +R+M +LK + F E N+D K++S +PSR+KRK S+ IN
Sbjct: 431 RSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIYSRVPSRIKRKLSIDIN 490

Query: 226 TEGSLKV 233
           TEGSL V
Sbjct: 491 TEGSLTV 497

The following BLAST results are available for this feature:

BLAST of Spg011018 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044978.1	1.8e-35	69.29	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK16519.1	1.8e-35	69.29	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0040811.1	3.1e-35	69.29	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0036008.1	5.3e-35	68.50	Retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0050736.1	9.1e-35	67.72	retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotranspos...	[more]

BLAST of Spg011018 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg011018 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQ06	8.9e-36	69.29	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3D209	8.9e-36	69.29	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TGM1	1.5e-35	69.29	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7SZJ7	2.6e-35	68.50	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7U974	4.4e-35	67.72	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Spg011018 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 67..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg011018.1	Spg011018.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity