Spg008345 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg008345
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold10: 36381069 .. 36381401 (+)
RNA-Seq ExpressionSpg008345
SyntenySpg008345
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCAGCTCCGGCCGCTTATCTAGTTTTTGCCATATTGGTCTCATCCATCTCTCTGAGCTCGCCGTCAAGAGCCGCCGCAAGCCTCAGTAACTCTTCTCCTCTGCCACCGGCGCCACCAAAGAAGTTCCTCCTTTCACTCCTATTTCCTCATCACAGCTTTCCCCAACCGTCGCTGCCGGCAGACGACTCACCGGTGAAACCAGTCCGGCGTCTAAAAGCCGACGTGTGTCCTTCCGGAGCATCCAGCAAAGGGGGTAAAGATGACAAGCCGAAACATGAACCGTGGCCGGATTGCTTCGTCTCCAAATCGCCACCGCCTAAATTCTAA

mRNA sequence

ATGGCGCCAGCTCCGGCCGCTTATCTAGTTTTTGCCATATTGGTCTCATCCATCTCTCTGAGCTCGCCGTCAAGAGCCGCCGCAAGCCTCAGTAACTCTTCTCCTCTGCCACCGGCGCCACCAAAGAAGTTCCTCCTTTCACTCCTATTTCCTCATCACAGCTTTCCCCAACCGTCGCTGCCGGCAGACGACTCACCGGTGAAACCAGTCCGGCGTCTAAAAGCCGACGTGTGTCCTTCCGGAGCATCCAGCAAAGGGGGTAAAGATGACAAGCCGAAACATGAACCGTGGCCGGATTGCTTCGTCTCCAAATCGCCACCGCCTAAATTCTAA

Coding sequence (CDS)

ATGGCGCCAGCTCCGGCCGCTTATCTAGTTTTTGCCATATTGGTCTCATCCATCTCTCTGAGCTCGCCGTCAAGAGCCGCCGCAAGCCTCAGTAACTCTTCTCCTCTGCCACCGGCGCCACCAAAGAAGTTCCTCCTTTCACTCCTATTTCCTCATCACAGCTTTCCCCAACCGTCGCTGCCGGCAGACGACTCACCGGTGAAACCAGTCCGGCGTCTAAAAGCCGACGTGTGTCCTTCCGGAGCATCCAGCAAAGGGGGTAAAGATGACAAGCCGAAACATGAACCGTGGCCGGATTGCTTCGTCTCCAAATCGCCACCGCCTAAATTCTAA

Protein sequence

MAPAPAAYLVFAILVSSISLSSPSRAAASLSNSSPLPPAPPKKFLLSLLFPHHSFPQPSLPADDSPVKPVRRLKADVCPSGASSKGGKDDKPKHEPWPDCFVSKSPPPKF
Homology
BLAST of Spg008345 vs. NCBI nr
Match: KAA0054906.1 (hypothetical protein E6C27_scaffold43052G00340 [Cucumis melo var. makuwa] >TYK22694.1 hypothetical protein E5676_scaffold1163G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 52/118 (44.07%), Postives = 65/118 (55.08%), Query Frame = 0

Query: 1   MAPAPAAYLVFAILVSSISLSSPS---RAAASLSNSSPLPPAPPKKFLLSLLF--PHHSF 60
           MAP P AYL  AI ++ +S S  S    A A  S+  P PP  P+    SLLF   H S 
Sbjct: 1   MAP-PLAYLFLAIFLAMVSFSPSSLSISATAIPSHGIPYPPPLPR----SLLFHNDHSSL 60

Query: 61  PQPSLPADDSPVKPVRRL---KADVCPSGASSKGGKDDKPKHEPWPDCFVSKSPPPKF 111
           PQ S  A++ P KP++R+   + D C + A   G KD K   +PWP C VSKSPPP F
Sbjct: 61  PQ-SPAAEEYPAKPLQRVNGERKDKC-TEAPRNGNKDAKSSKDPWPKCPVSKSPPPPF 111

BLAST of Spg008345 vs. ExPASy TrEMBL
Match: A0A5D3DGG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00110 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.2e-06
Identity = 52/118 (44.07%), Postives = 65/118 (55.08%), Query Frame = 0

Query: 1   MAPAPAAYLVFAILVSSISLSSPS---RAAASLSNSSPLPPAPPKKFLLSLLF--PHHSF 60
           MAP P AYL  AI ++ +S S  S    A A  S+  P PP  P+    SLLF   H S 
Sbjct: 1   MAP-PLAYLFLAIFLAMVSFSPSSLSISATAIPSHGIPYPPPLPR----SLLFHNDHSSL 60

Query: 61  PQPSLPADDSPVKPVRRL---KADVCPSGASSKGGKDDKPKHEPWPDCFVSKSPPPKF 111
           PQ S  A++ P KP++R+   + D C + A   G KD K   +PWP C VSKSPPP F
Sbjct: 61  PQ-SPAAEEYPAKPLQRVNGERKDKC-TEAPRNGNKDAKSSKDPWPKCPVSKSPPPPF 111

BLAST of Spg008345 vs. ExPASy TrEMBL
Match: A0A0A0KEF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.5e-05
Identity = 54/116 (46.55%), Postives = 62/116 (53.45%), Query Frame = 0

Query: 1   MAPAPAAYLVFAIL--VSSISLSSPSRAA-ASLSNSSPLPPAPPKKFLLSLLFPHHSFPQ 60
           MAP P AYL  AIL  V+S S SS S AA A+ S   P PP  P+     L    HS   
Sbjct: 1   MAP-PLAYLFLAILLAVASFSPSSLSIAATAAPSYGIPYPPPLPRPL---LFHNDHSSLP 60

Query: 61  PSLPADDSPVKPVRRL---KADVCPSGASSKGGKDDKPKHEPWPDCFVSKSPPPKF 111
           PS  A++ P K  RR+   + D C S A   G KD KP  +PWP C V KSPPP F
Sbjct: 61  PSPAAEEYPAKSPRRVNGERKDKC-SEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0054906.11.1e-0544.07hypothetical protein E6C27_scaffold43052G00340 [Cucumis melo var. makuwa] >TYK22... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DGG95.2e-0644.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KEF91.5e-0546.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg008345.1Spg008345.1mRNA