Spg007370 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg007370
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA repair protein XRCC2 homolog
Location	scaffold7: 19817049 .. 19819012 (-)
RNA-Seq Expression	Spg007370
Synteny	Spg007370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCGTCGTTCCGACAAGGTGAAAGAGAAAGAAAGAACGAAGAAGAGACGGCGATATTTACAAGAAGAAAGCACACGGAGAAAGAAAGAACTGAGAAGAAAAAAAAACACATGACGATTCGTGTGACACCGAGCTCTGGCAAAGAAAGGGCGTTATTTCGGCAAGGTGAAAATGCTTGCTAATGGCCGAAAGTTAAAAGAGAGACTAAAAGAGAGTTAAAAGAGACACTAAAAAAGCAAGCAAATGAAGAGAGAAAGTAGGAAGAATGGAGAAAGAGGAAGACGAGCTCAATTGAACAAAGAAAGTAAATAAGTAATAAGTAATGATTACCTATATATAGGTAATTAGTGCTTAGAAGTCTGAGATGACATCTACTATGCCTGAACACACCTTTTCTCTATTCTTTATATATATATATGGAAAGAGAAATGTTAACATCAAAGTTTTTTCACCAACTGTAATTCTACTTTATGGTATCTCTTAATGTTTTGGGTCATTTTTAGGATTTGAGGTGTCTTTGAATTATTATTTGTATTTAGTTGGCCCCTTTTAATAGGGGTCATGGTAAACATAAAGGGCTTAGAGCGAATGAATGACCGACTCCGACCGAAACTGCTACCAACCGACCGATGTCGGTCTCAATTGATTTCAGTCGATCAGATCGGTTTTTTGGTATGTGATACTCACCCCTATGAGCAACAATTACACATTCAAGGATTTCAAGTCATGCTACACTTGCATTTGCATAAATGTACTCAAAATAATGTAAAATAAAAAATTAAGCAACGCAAGTAAACGTTGAGAGAAAAAAGAAGAGAAAAATACACTTTTGGTCCTTGAGGTTTGGGTTAAATTACACTTTGGTCCCTGAGTTTTCAAACTCAACAAAATTACCCTTGAGGTTTGAGATAAGAAACAATTTGGCTCCTGCCGTCCAGTTTCCCGTTAAATACTAACGAACTGTTGACGTGACACTACTATTTTAATTAAAAAATTAATTTTTAAATTTTGTTTAAATAAAAATATATTAAAATAATATGAATATTATTATTTTTAATTATTTCTTTCATTCTTTCTTCCCATTCTTCACGTCAAAATGGATGACGGACATGCTAATTACCGCTGAGCTATGCTCGCTTTGGCTAATTTTGTTGAGTTTGAGAACTACTAAAATGTAACTTAATAGAAAGCTCATGGACAAAAGTGTATTTTTCTAAAAAAAGAAAAAAGAAAAAAAGAAAAATGAAAAAAGAAATGGAGAACAAAAACTTGAGCGAGTAACACGAAAGAGAAAAAATTGTAACGTCTTATTTAGGAGGTTACGTGGCATTTTGGATTTACGATTTGAATCATTCATAGAAAAAAGCCGCTCAGCAGCCGCCGCTCACAGCCCAAACACGGGCGTTGTTATGGCGCTCAGCCAGTGGATCGACGGCGACGAGAGCGCGGCGGAGATGCTTGCCAGAGTCCTCAAAGAACGAACCTCCTTGTTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTCGGCAATGTGGTCGAACTTGTTGGACCCTCTGGTTCTGCCAAGACACAGATATTAATCCAGGTCGAATTATCAACTTCAATTTGGCCATCTGAACTTCATGCATCATTTATAATTGACAATATCGATGAAAATTTGATGTTGATTTGCCTCGAAAGCATTTGAGGACAATTTCTGTGCCACTAAAAGTAGACTGCTTCTATGAGCAGGCTGCAGTTAATTGCATTCTTCCCAAAGAGGGGAATGGGGTGAGCTATGGAGGCTTGGAGTGTTCAGTGGTGTTCATTGACTTGGATTGTCGTCTTGATATCTCAAGACTTTCACAAGTCCTGAAGCTTCGAATTTTGGAGGCGAATGGCAACGGTCAGCTATTTGTGTCATTTAATATTGATAAAATGTTAACATCAAGGTTCTTCACGAGCTGCAATTCTGCTTAA

mRNA sequence

ATGACATCGTCGTTCCGACAAGGTGAAAGAGAAAGAAAGAACGAAGAAGAGACGGCGATATTTACAAGAAGAAAGCACACGGAGAAAGAAAGAACTGAGAAGAAAAAAAAACACATGACGATTCGTGTGACACCGAGCTCTGGCAAAGAAAGGGCGTTATTTCGGCAAGAAAAAAGCCGCTCAGCAGCCGCCGCTCACAGCCCAAACACGGGCGTTGTTATGGCGCTCAGCCAGTGGATCGACGGCGACGAGAGCGCGGCGGAGATGCTTGCCAGAGTCCTCAAAGAACGAACCTCCTTGTTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTCGGCAATGTGGTCGAACTTGTTGGACCCTCTGGTTCTGCCAAGACACAGATATTAATCCAGCATTTGAGGACAATTTCTGTGCCACTAAAAGTAGACTGCTTCTATGAGCAGGCTGCAGTTAATTGCATTCTTCCCAAAGAGGGGAATGGGGTGAGCTATGGAGGCTTGGAGTGTTCAGTGGTGTTCATTGACTTGGATTGTCGTCTTGATATCTCAAGACTTTCACAAGTCCTGAAGCTTCGAATTTTGGAGGCGAATGGCAACGGTCAGCTATTTGTGTCATTTAATATTGATAAAATGTTAACATCAAGGTTCTTCACGAGCTGCAATTCTGCTTAA

Coding sequence (CDS)

ATGACATCGTCGTTCCGACAAGGTGAAAGAGAAAGAAAGAACGAAGAAGAGACGGCGATATTTACAAGAAGAAAGCACACGGAGAAAGAAAGAACTGAGAAGAAAAAAAAACACATGACGATTCGTGTGACACCGAGCTCTGGCAAAGAAAGGGCGTTATTTCGGCAAGAAAAAAGCCGCTCAGCAGCCGCCGCTCACAGCCCAAACACGGGCGTTGTTATGGCGCTCAGCCAGTGGATCGACGGCGACGAGAGCGCGGCGGAGATGCTTGCCAGAGTCCTCAAAGAACGAACCTCCTTGTTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTCGGCAATGTGGTCGAACTTGTTGGACCCTCTGGTTCTGCCAAGACACAGATATTAATCCAGCATTTGAGGACAATTTCTGTGCCACTAAAAGTAGACTGCTTCTATGAGCAGGCTGCAGTTAATTGCATTCTTCCCAAAGAGGGGAATGGGGTGAGCTATGGAGGCTTGGAGTGTTCAGTGGTGTTCATTGACTTGGATTGTCGTCTTGATATCTCAAGACTTTCACAAGTCCTGAAGCTTCGAATTTTGGAGGCGAATGGCAACGGTCAGCTATTTGTGTCATTTAATATTGATAAAATGTTAACATCAAGGTTCTTCACGAGCTGCAATTCTGCTTAA

Protein sequence

MTSSFRQGERERKNEEETAIFTRRKHTEKERTEKKKKHMTIRVTPSSGKERALFRQEKSRSAAAAHSPNTGVVMALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTSRFFTSCNSA

Homology

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BLAST of Spg007370 vs. NCBI nr
Match: KAG7032399.1 (DNA repair protein XRCC2-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.8 bits (538), Expect = 5.9e-51
Identity = 110/143 (76.92%), Postives = 116/143 (81.12%), Query Frame = 0


Query: 74  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQH 133
           MAL QWIDGDE+AAEML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILI  
Sbjct: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILI-- 60

Query: 134 LRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDISRLSQVLKLR 193
                          QAAVNCILPKE NG+ YGGLECSVVFIDLDCRLDISRL+QVLKLR
Sbjct: 61  ---------------QAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLR 120

Query: 194 ILEANGNGQLFVSFNIDKMLTSR 217
           ILE NG+G+LFV FNID + TSR
Sbjct: 121 ILEGNGSGELFVPFNIDNIFTSR 126

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BLAST of Spg007370 vs. NCBI nr
Match: KAG6601640.1 (DNA repair protein XRCC2-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-47
Identity = 111/158 (70.25%), Postives = 117/158 (74.05%), Query Frame = 0


Query: 64  AAHSPNTGVVMALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSG 123
           A   PN GV MAL QWIDGDE+AAEML RVLKERTSL VPPLHRVPL VGNVVELVGPSG
Sbjct: 58  AEFRPNKGVAMALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSG 117

Query: 124 SAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDI 183
           SAKTQILI                 QAAVNCILPKE NG+ YGGLECSVVFIDLDCRLDI
Sbjct: 118 SAKTQILI-----------------QAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDI 177

Query: 184 SRLSQVLKLRILEANGNGQLFVSFNIDKMLTS---RFF 219
           SRL+QVLKLRILE NG+G      N D + T+   RFF
Sbjct: 178 SRLAQVLKLRILEGNGSGDW---GNFDALYTTCLRRFF 195

[Close]

BLAST of Spg007370 vs. NCBI nr
Match: XP_023550059.1 (DNA repair protein XRCC2 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.0 bits (502), Expect = 8.8e-47
Identity = 109/148 (73.65%), Postives = 113/148 (76.35%), Query Frame = 0


Query: 74  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQH 133
           MAL QWIDGDE+AAEML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILI  
Sbjct: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILI-- 60

Query: 134 LRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDISRLSQVLKLR 193
                          QAAVNCILPKE NG+ YGGLECSVVFIDLDCRLDISRLSQVLKLR
Sbjct: 61  ---------------QAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLR 120

Query: 194 ILEANGNGQLFVSFNIDKMLTS---RFF 219
           ILE NGNG L    N D + T+   RFF
Sbjct: 121 ILEGNGNGDL---GNFDALYTTCLRRFF 128

[Close]

BLAST of Spg007370 vs. NCBI nr
Match: XP_023550300.1 (DNA repair protein XRCC2 homolog isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.0 bits (502), Expect = 8.8e-47
Identity = 109/148 (73.65%), Postives = 113/148 (76.35%), Query Frame = 0


Query: 74  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQH 133
           MAL QWIDGDE+AAEML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILI  
Sbjct: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILI-- 60

Query: 134 LRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDISRLSQVLKLR 193
                          QAAVNCILPKE NG+ YGGLECSVVFIDLDCRLDISRLSQVLKLR
Sbjct: 61  ---------------QAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLR 120

Query: 194 ILEANGNGQLFVSFNIDKMLTS---RFF 219
           ILE NGNG L    N D + T+   RFF
Sbjct: 121 ILEGNGNGDL---GNFDALYTTCLRRFF 128

[Close]

BLAST of Spg007370 vs. NCBI nr
Match: XP_022998340.1 (DNA repair protein XRCC2 homolog isoform X3 [Cucurbita maxima])

HSP 1 Score: 196.8 bits (499), Expect = 2.0e-46
Identity = 109/148 (73.65%), Postives = 112/148 (75.68%), Query Frame = 0


Query: 74  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQH 133
           MAL QWIDGDESAAEML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILI  
Sbjct: 1   MALRQWIDGDESAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILI-- 60

Query: 134 LRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDISRLSQVLKLR 193
                          QAAVNCILPKE NG+ YGGLECSVVFIDLDCRLDISRLSQVLKLR
Sbjct: 61  ---------------QAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLR 120

Query: 194 ILEANGNGQLFVSFNIDKMLTS---RFF 219
           ILE NGNG      N D + T+   RFF
Sbjct: 121 ILEGNGNGDW---GNFDALYTTCLRRFF 128

[Close]

BLAST of Spg007370 vs. ExPASy Swiss-Prot
Match: Q682D3 (DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 SV=2)

HSP 1 Score: 139.4 bits (350), Expect = 4.9e-32
Identity = 73/125 (58.40%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 79  WIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTIS 138
           WI GDE+A +ML+RVLK+R  L +PPLHRVPLR GNVVE+ G S SAKTQILI       
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILI------- 68

Query: 139 VPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDISRLSQVLKLRILEAN 198
                     QAA++CILPK  NG+ YGGL   V+F+DLDCR D+ RLSQ+LK R+L+AN
Sbjct: 69  ----------QAAISCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQAN 116

Query: 199 --GNG 202
             GNG
Sbjct: 129 WLGNG 116

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BLAST of Spg007370 vs. ExPASy Swiss-Prot
Match: O43543 (DNA repair protein XRCC2 OS=Homo sapiens OX=9606 GN=XRCC2 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.7e-05
Identity = 51/151 (33.77%), Postives = 70/151 (46.36%), Query Frame = 0


Query: 84  ESAAEMLARV-----LKE-RTSLFV---PPLHRVPLRVGNVVELVGPSGSAKTQILIQHL 143
           ES  E+LAR+     LKE   +LF     P+H      G+++E  GP G+ KT++L  HL
Sbjct: 9   ESGTELLARLEGRSSLKEIEPNLFADEDSPVH------GDILEFHGPEGTGKTEML-YHL 68

Query: 144 RTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDISRLSQVLKLRI 203
                              CILPK     S GGLE  V+FID D   D+ RL  +L+ R+
Sbjct: 69  ----------------TARCILPK-----SEGGLEVEVLFIDTDYHFDMLRLVTILEHRL 123

Query: 204 LEANGNGQLFVSFNIDKMLTSRFF-TSCNSA 225
            ++        S  I K    RFF   C+S+
Sbjct: 129 SQS--------SEEIIKYCLGRFFLVYCSSS 123

[Close]

BLAST of Spg007370 vs. ExPASy Swiss-Prot
Match: Q9CX47 (DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.6e-05
Identity = 43/124 (34.68%), Postives = 60/124 (48.39%), Query Frame = 0


Query: 84  ESAAEMLARV-----LKE-RTSLFV---PPLHRVPLRVGNVVELVGPSGSAKTQILIQHL 143
           ES  E+LAR+     LKE   +LF     P+H      G++ E  GP G+ KT++L  HL
Sbjct: 9   ESGTELLARLEGRSSLKELEPNLFADEDSPVH------GDIFEFHGPEGTGKTEML-YHL 68

Query: 144 RTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDISRLSQVLKLRI 199
                              CILPK     S GGL+  V+FID D   D+ RL  VL+ R+
Sbjct: 69  ----------------TARCILPK-----SEGGLQIEVLFIDTDYHFDMLRLVTVLEHRL 104

[Close]

BLAST of Spg007370 vs. ExPASy TrEMBL
Match: A0A6J1KC81 (DNA repair protein XRCC2 homolog isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111492982 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 9.5e-47
Identity = 109/148 (73.65%), Postives = 112/148 (75.68%), Query Frame = 0


Query: 74  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQH 133
           MAL QWIDGDESAAEML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILI  
Sbjct: 1   MALRQWIDGDESAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILI-- 60

Query: 134 LRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDISRLSQVLKLR 193
                          QAAVNCILPKE NG+ YGGLECSVVFIDLDCRLDISRLSQVLKLR
Sbjct: 61  ---------------QAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLR 120

Query: 194 ILEANGNGQLFVSFNIDKMLTS---RFF 219
           ILE NGNG      N D + T+   RFF
Sbjct: 121 ILEGNGNGDW---GNFDALYTTCLRRFF 128

[Close]

BLAST of Spg007370 vs. ExPASy TrEMBL
Match: A0A6J1KC54 (DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492982 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 9.5e-47
Identity = 109/148 (73.65%), Postives = 112/148 (75.68%), Query Frame = 0


Query: 74  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQH 133
           MAL QWIDGDESAAEML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILI  
Sbjct: 1   MALRQWIDGDESAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILI-- 60

Query: 134 LRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDISRLSQVLKLR 193
                          QAAVNCILPKE NG+ YGGLECSVVFIDLDCRLDISRLSQVLKLR
Sbjct: 61  ---------------QAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLR 120

Query: 194 ILEANGNGQLFVSFNIDKMLTS---RFF 219
           ILE NGNG      N D + T+   RFF
Sbjct: 121 ILEGNGNGDW---GNFDALYTTCLRRFF 128

[Close]

BLAST of Spg007370 vs. ExPASy TrEMBL
Match: A0A6J1DLP4 (DNA repair protein XRCC2 homolog OS=Momordica charantia OX=3673 GN=LOC111022310 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.8e-46
Identity = 102/128 (79.69%), Postives = 106/128 (82.81%), Query Frame = 0


Query: 74  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQH 133
           MALSQWI GDE+AAEMLARVLK+R SLFVPPLHR+PLR GNVVELVGPSGSAKTQILI  
Sbjct: 1   MALSQWIAGDETAAEMLARVLKQRPSLFVPPLHRLPLRAGNVVELVGPSGSAKTQILI-- 60

Query: 134 LRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDISRLSQVLKLR 193
                          QAAVNCILPKE NGV YGGLECSVVFIDLDCRLD+SRLSQVLKLR
Sbjct: 61  ---------------QAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDVSRLSQVLKLR 111

Query: 194 ILEANGNG 202
           ILEANGNG
Sbjct: 121 ILEANGNG 111

[Close]

BLAST of Spg007370 vs. ExPASy TrEMBL
Match: A0A6J1GYJ6 (DNA repair protein XRCC2 homolog isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111458674 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 5.2e-45
Identity = 106/148 (71.62%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 74  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQH 133
           MAL QWIDGDE+AAEML RV KERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILI  
Sbjct: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILI-- 60

Query: 134 LRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDISRLSQVLKLR 193
                          QAAVNCILPKE NG+ YGGLECSVVFIDLDCRLDISRLSQVLKLR
Sbjct: 61  ---------------QAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLR 120

Query: 194 ILEANGNGQLFVSFNIDKMLTS---RFF 219
           ILE NG+G      N D + T+   RFF
Sbjct: 121 ILEGNGSGDW---GNFDALYTTCLRRFF 128

[Close]

BLAST of Spg007370 vs. ExPASy TrEMBL
Match: A0A6J1GZX5 (DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458674 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 5.2e-45
Identity = 106/148 (71.62%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 74  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQH 133
           MAL QWIDGDE+AAEML RV KERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILI  
Sbjct: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILI-- 60

Query: 134 LRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDISRLSQVLKLR 193
                          QAAVNCILPKE NG+ YGGLECSVVFIDLDCRLDISRLSQVLKLR
Sbjct: 61  ---------------QAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLR 120

Query: 194 ILEANGNGQLFVSFNIDKMLTS---RFF 219
           ILE NG+G      N D + T+   RFF
Sbjct: 121 ILEGNGSGDW---GNFDALYTTCLRRFF 128

[Close]

BLAST of Spg007370 vs. TAIR 10
Match: AT5G64520.2 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 139.4 bits (350), Expect = 3.5e-33
Identity = 73/125 (58.40%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 79  WIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTIS 138
           WI GDE+A +ML+RVLK+R  L +PPLHRVPLR GNVVE+ G S SAKTQILI       
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILI------- 68

Query: 139 VPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDISRLSQVLKLRILEAN 198
                     QAA++CILPK  NG+ YGGL   V+F+DLDCR D+ RLSQ+LK R+L+AN
Sbjct: 69  ----------QAAISCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQAN 116

Query: 199 --GNG 202
             GNG
Sbjct: 129 WLGNG 116

[Close]

BLAST of Spg007370 vs. TAIR 10
Match: AT5G64520.1 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 139.4 bits (350), Expect = 3.5e-33
Identity = 73/125 (58.40%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 79  WIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTIS 138
           WI GDE+A +ML+RVLK+R  L +PPLHRVPLR GNVVE+ G S SAKTQILI       
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILI------- 68

Query: 139 VPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDISRLSQVLKLRILEAN 198
                     QAA++CILPK  NG+ YGGL   V+F+DLDCR D+ RLSQ+LK R+L+AN
Sbjct: 69  ----------QAAISCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQAN 116

Query: 199 --GNG 202
             GNG
Sbjct: 129 WLGNG 116

[Close]

BLAST of Spg007370 vs. TAIR 10
Match: AT5G64520.3 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 139.4 bits (350), Expect = 3.5e-33
Identity = 73/125 (58.40%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 79  WIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTIS 138
           WI GDE+A +ML+RVLK+R  L +PPLHRVPLR GNVVE+ G S SAKTQILI       
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILI------- 68

Query: 139 VPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDISRLSQVLKLRILEAN 198
                     QAA++CILPK  NG+ YGGL   V+F+DLDCR D+ RLSQ+LK R+L+AN
Sbjct: 69  ----------QAAISCILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQAN 116

Query: 199 --GNG 202
             GNG
Sbjct: 129 WLGNG 116

The following BLAST results are available for this feature:

BLAST of Spg007370 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032399.1	5.9e-51	76.92	DNA repair protein XRCC2-like protein [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6601640.1	1.0e-47	70.25	DNA repair protein XRCC2-like protein, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_023550059.1	8.8e-47	73.65	DNA repair protein XRCC2 homolog isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023550300.1	8.8e-47	73.65	DNA repair protein XRCC2 homolog isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_022998340.1	2.0e-46	73.65	DNA repair protein XRCC2 homolog isoform X3 [Cucurbita maxima]	[more]

BLAST of Spg007370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682D3	4.9e-32	58.40	DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 S...	[more]
O43543	1.7e-05	33.77	DNA repair protein XRCC2 OS=Homo sapiens OX=9606 GN=XRCC2 PE=1 SV=1	[more]
Q9CX47	6.6e-05	34.68	DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1	[more]

BLAST of Spg007370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KC81	9.5e-47	73.65	DNA repair protein XRCC2 homolog isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1KC54	9.5e-47	73.65	DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1DLP4	2.8e-46	79.69	DNA repair protein XRCC2 homolog OS=Momordica charantia OX=3673 GN=LOC111022310 ...	[more]
A0A6J1GYJ6	5.2e-45	71.62	DNA repair protein XRCC2 homolog isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1GZX5	5.2e-45	71.62	DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of Spg007370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64520.2	3.5e-33	58.40	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]
AT5G64520.1	3.5e-33	58.40	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]
AT5G64520.3	3.5e-33	58.40	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 108..223 e-value: 1.2E-10 score: 43.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 105..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
IPR030547	DNA repair protein XRCC2	PANTHER	PTHR46644	DNA REPAIR PROTEIN XRCC2	coord: 77..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg007370.1	Spg007370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0033063	Rad51B-Rad51C-Rad51D-XRCC2 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding