Spg006872 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006872
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon protein
Location	scaffold10: 38913680 .. 38915293 (-)
RNA-Seq Expression	Spg006872
Synteny	Spg006872

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGACGCAAAATTGCCTCGATGTGTTAGATGAAACATACATCAAGGTCAATGTTAGTGTCTTCGATTGCCCGAGGTATAGAACAAGGAAAGGTGAAATTGTAACGAATGTGCTTGTTGTCTATGATACAAAAGGAGATTTCATATTCGTCCTACCCGAGTGGGAAGGGTCTGCCGTTGATTCCTCAGTTCTTAGAGATGCATTATCAAAACGGACTCAGAGTTCCGAAGGTTAAATAATAAGACCTTTTTCCTTTCAACATAAAACCCTTAGGAAGATGTATTGAGCCAATACCACATTCTATAGGATATTATTATCTGTACGATGTTGGGTACCTTAACGTAGAGGGTTTCCTAGCACCGTATAGAGGGGAATGTTACCACGTTTTTGAATGACGTGGGGCGGGGAATGCACCAACTACTCCAAGAGAATTCTTTAACATGAAGCATTCATCTGCAAGGAACGTGATTGAGAGGGCATTCGGTTTGTTGAAAAAAAGGTGTGCTATCCTCCGAGGGAAATCGTACTATCCAGTTTGAATTCAAGGACGGACCATCGCAGTGTGCTGCTTACTTCACAATCTTATCAACAGGGAGATGAATGATCGTGAAATTCTCGATGAGTTGGATGAGGTGGACTCTACGTCGGCTATAACTGATGGAGAGAGTATTAATTTCATTGAGACTTTCGACGAATGGAGCCGGTGGAGGGATGAGTTGGCAGAACAAATGTTTTCGGATTGGGAGTTATGTAATAGCTAATGGATTAATGTCGCTTTATAGAATTTAGGAATTGCTTCTCTTAATTCAAGTATTTAGTTTTGCTGGTTGTATGAACTGTTTACATTCTAATCATTAATGTACTTGTTTATCTTATTAATGCAATTTTCATTCGTGAACTCTGTGTACGTGATTTTTAGTACGTCATTGTTTAACATTTCCACAATGTGCGTATTCACATAATAGAATGGTCTGTTCGTCTAGAGCTCTGAAACACACTTGGACGCAAACGAGGATGCGAAGCTGGTGGAGTCCCTCGTGTCCTTAGTTCATGCTGGCGGTTGGAGGTCTGATAATGAGACTTTCAGATCTGGGTATCTGGCGCAACTGGAGCATTTGATGAAGGAGAAACTGTTTGGATGGGATGTTCCGGTACAAAGCAACATTGAATCCAGGGTTCGCACTTTGAAGAAACAATACCAAGTCATTGTAGAAATGACGGGTCCTGGATGCAGCGACTTTGGGTGGAACGATGAATTTAAGTGTATCGAGGCAGAAAAAGAAACGTTTGATTTGTGGGTGAAGTTAAGAACGTGTGACTGTGTTAACTTCTCATATTTTATCACTTTCTAACATACACTTTTGGGTGAATGCAGAACTATCCTATCGCAAAAGGCATGCGAAATAAGTCTTTCCCGCACTTCGAGGACTTGACCTATGTTTTTGGGAAGGATCGAGCCATAGGGAGGGTGTCAGAGGTGATGGGGGAGATGGGCTCCAATGTGCCAAAAGATGAGGTAGACCTCAATGGATCCTCAGAGAATGACATCCTGATCCTATCGTTCACCATGCCTATTGTGAACATGACACAGGATGAGCCTCGGGGGACGTAA

mRNA sequence

ATGTTGACGCAAAATTGCCTCGATGTGTTAGATGAAACATACATCAAGGTCAATGTTAGTGTCTTCGATTGCCCGAGGTATAGAACAAGGAAAGGTGAAATTGTAACGAATGTGCTTGTTGTCTATGATACAAAAGGAGATTTCATATTCGTCCTACCCGAGTGGGAAGGGTCTGCCGTTGATTCCTCAGTTCTTAGAGATGCATTATCAAAACGGACTCAGAGTTCCGAAGTTCATGCTGGCGGTTGGAGGTCTGATAATGAGACTTTCAGATCTGGGTATCTGGCGCAACTGGAGCATTTGATGAAGGAGAAACTGTTTGGATGGGATGTTCCGGTACAAAGCAACATTGAATCCAGGGTTCGCACTTTGAAGAAACAATACCAAGTCATTGTAGAAATGACGGGTCCTGGATGCAGCGACTTTGGGTGGAACGATGAATTTAAGTGTATCGAGGCAGAAAAAGAAACGTTTGATTTGTGGAACTATCCTATCGCAAAAGGCATGCGAAATAAGTCTTTCCCGCACTTCGAGGACTTGACCTATGTTTTTGGGAAGGATCGAGCCATAGGGAGGGTGTCAGAGGTGATGGGGGAGATGGGCTCCAATGTGCCAAAAGATGAGGTAGACCTCAATGGATCCTCAGAGAATGACATCCTGATCCTATCGTTCACCATGCCTATTGTGAACATGACACAGGATGAGCCTCGGGGGACGTAA

Coding sequence (CDS)

ATGTTGACGCAAAATTGCCTCGATGTGTTAGATGAAACATACATCAAGGTCAATGTTAGTGTCTTCGATTGCCCGAGGTATAGAACAAGGAAAGGTGAAATTGTAACGAATGTGCTTGTTGTCTATGATACAAAAGGAGATTTCATATTCGTCCTACCCGAGTGGGAAGGGTCTGCCGTTGATTCCTCAGTTCTTAGAGATGCATTATCAAAACGGACTCAGAGTTCCGAAGTTCATGCTGGCGGTTGGAGGTCTGATAATGAGACTTTCAGATCTGGGTATCTGGCGCAACTGGAGCATTTGATGAAGGAGAAACTGTTTGGATGGGATGTTCCGGTACAAAGCAACATTGAATCCAGGGTTCGCACTTTGAAGAAACAATACCAAGTCATTGTAGAAATGACGGGTCCTGGATGCAGCGACTTTGGGTGGAACGATGAATTTAAGTGTATCGAGGCAGAAAAAGAAACGTTTGATTTGTGGAACTATCCTATCGCAAAAGGCATGCGAAATAAGTCTTTCCCGCACTTCGAGGACTTGACCTATGTTTTTGGGAAGGATCGAGCCATAGGGAGGGTGTCAGAGGTGATGGGGGAGATGGGCTCCAATGTGCCAAAAGATGAGGTAGACCTCAATGGATCCTCAGAGAATGACATCCTGATCCTATCGTTCACCATGCCTATTGTGAACATGACACAGGATGAGCCTCGGGGGACGTAA

Protein sequence

MLTQNCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALSKRTQSSEVHAGGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLWNYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVPKDEVDLNGSSENDILILSFTMPIVNMTQDEPRGT

Homology

[Close]

BLAST of Spg006872 vs. NCBI nr
Match: KAA0045638.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 211.8 bits (538), Expect = 6.3e-51
Identity = 118/283 (41.70%), Postives = 157/283 (55.48%), Query Frame = 0


Query: 5   NCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSV 64
           NCL  LD TYIKVNV   D P +RTRKGEI TNVL V DTKGDF++VL  WEGSA DS +
Sbjct: 91  NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRI 150

Query: 65  LR------------DALSKRTQSSEVHAGGWR---------------------------- 124
           LR            +    + +    H   WR                            
Sbjct: 151 LRYYYLCDAGYPNAEGFLVQDRGQRYHLQEWRGAANAPTNAKEYFNTKHSSTRNVIECAF 210

Query: 125 ---SDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSD 184
               DN+TFR GYLAQL  +M EKL G  V   + I+ R++TLK+ +Q I EM GP CS 
Sbjct: 211 GVLKDNDTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMQGPACSG 270

Query: 185 FGWNDEFKCIEAEKETFDLW--NYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGE 240
            GWNDE KCI  +KE FD W  ++P AKG+ NKSF ++++LTYVFG++R I R +E   +
Sbjct: 271 SGWNDEEKCIIGKKELFDNWVRSHPAAKGLLNKSFLYYDELTYVFGRNRVISRFAETFAD 330

[Close]

BLAST of Spg006872 vs. NCBI nr
Match: TYK02619.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 211.8 bits (538), Expect = 6.3e-51
Identity = 118/283 (41.70%), Postives = 157/283 (55.48%), Query Frame = 0


Query: 5   NCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSV 64
           NCL  LD TYIKVNV   D P +RTRKGEI TNVL V DTKGDF++VL  WEGSA DS +
Sbjct: 91  NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRI 150

Query: 65  LR------------DALSKRTQSSEVHAGGWR---------------------------- 124
           LR            +    + +    H   WR                            
Sbjct: 151 LRYYYLCDAGYPNAEGFLVQDRGQRYHLQEWRGAANAPTNAKEYFNTKHSSTRNVIECAF 210

Query: 125 ---SDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSD 184
               DN+TFR GYLAQL  +M EKL G  V   + I+ R++TLK+ +Q I EM GP CS 
Sbjct: 211 GVLKDNDTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMQGPACSG 270

Query: 185 FGWNDEFKCIEAEKETFDLW--NYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGE 240
            GWNDE KCI  +KE FD W  ++P AKG+ NKSF ++++LTYVFG++R I R +E   +
Sbjct: 271 SGWNDEEKCIIGKKELFDNWVRSHPAAKGLLNKSFLYYDELTYVFGRNRVISRFAETFAD 330

[Close]

BLAST of Spg006872 vs. NCBI nr
Match: KAA0052026.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04534.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 3.1e-50
Identity = 110/210 (52.38%), Postives = 133/210 (63.33%), Query Frame = 0


Query: 10  LDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDAL 69
           LD  YIK+NV   D  RYRT KGE+ TNVL V DTKGDFI+VL  WEGSA DS +LRDA+
Sbjct: 57  LDGMYIKINVIKSDRARYRTCKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDAI 116

Query: 70  SK-------RTQSSE---------------------VHAGGWRSDNETFRSGYLAQLEHL 129
           S+       R  SS                      V+ GGWRSDN TF  GYL QL  +
Sbjct: 117 SRPNGLKVPRQSSSRLPKHNWTKKEEAGLIECLVELVNVGGWRSDNRTFWLGYLNQLARM 176

Query: 130 MKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW 189
           M  K+ G ++   S I+SR++ LK+ +  I EM GP CS FGWNDE KCI  EKE FD W
Sbjct: 177 MALKIPGSNI-YASTIDSRIKLLKRMFHSIAEMRGPTCSGFGWNDEQKCIVVEKEFFDNW 236

Query: 190 NYPIAKGMRNKSFPHFEDLTYVFGKDRAIG 192
           ++P AKG+ NKSFPH+++L+YVFGKDRA G
Sbjct: 237 SHPAAKGLLNKSFPHYDELSYVFGKDRARG 265

[Close]

BLAST of Spg006872 vs. NCBI nr
Match: TYK04867.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.1 bits (531), Expect = 4.1e-50
Identity = 112/231 (48.48%), Postives = 137/231 (59.31%), Query Frame = 0


Query: 4   QNCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSS 63
           +NC   LDETYIKVNV   D P + T KGEI TNVL V DTKGDF++VL  WEGS VDS 
Sbjct: 135 ENCFGALDETYIKVNVPAVDRPTFTTCKGEIATNVLDVCDTKGDFVYVLAGWEGSVVDSQ 194

Query: 64  VLRDALSKRT-----QSSEVHA-------------------------------------- 123
           +LRDAL++         S  H+                                      
Sbjct: 195 ILRDALARENGLRVPNGSLGHSSWKVVLSFYVNLNPCPEACLDEGGGRHSCGVLNGVGVN 254

Query: 124 GGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCS 183
           GGW+SDN TFR GYLAQL  +M EKL G  V   + I+ R++ LK+ +QVI EM GP CS
Sbjct: 255 GGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQTFQVIAEMRGPACS 314

Query: 184 DFGWNDEFKCIEAEKETFDLW--NYPIAKGMRNKSFPHFEDLTYVFGKDRA 190
            FGWNDE KCI AEKE FD W  ++P AKG+ NKSF ++++LTYVFG+D+A
Sbjct: 315 GFGWNDEEKCIIAEKELFDNWIRSHPTAKGLLNKSFSYYDELTYVFGRDKA 365

[Close]

BLAST of Spg006872 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 1.9e-47
Identity = 122/336 (36.31%), Postives = 150/336 (44.64%), Query Frame = 0


Query: 4   QNCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSS 63
           +NCL  LD TYIKVNV   D  RYRTRKGE+ TNVL VYDTKGDF++VL  WEGSA DS 
Sbjct: 162 ENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSR 221

Query: 64  VLRDALS----------------------------------------------------- 123
           +LRDALS                                                     
Sbjct: 222 ILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFF 281

Query: 124 ------------------------------------------------------------ 183
                                                                       
Sbjct: 282 NMKHSSARNVIERAFGVLKGRWAILRGKSYHPVEVQCHTILACCLLHNLINREMTNFDIE 341

Query: 184 -------------KRTQSSE--------VHAGGWRSDNETFRSGYLAQLEHLMKEKLFGW 206
                        K T + E        V+AGGWRSDN TFR GYL QL  +M  K+ G 
Sbjct: 342 DNIVSMTSSSRLPKHTWTKEEEAGLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGC 401

[Close]

BLAST of Spg006872 vs. ExPASy TrEMBL
Match: A0A5D3BWV2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00270 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 3.0e-51
Identity = 118/283 (41.70%), Postives = 157/283 (55.48%), Query Frame = 0


Query: 5   NCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSV 64
           NCL  LD TYIKVNV   D P +RTRKGEI TNVL V DTKGDF++VL  WEGSA DS +
Sbjct: 91  NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRI 150

Query: 65  LR------------DALSKRTQSSEVHAGGWR---------------------------- 124
           LR            +    + +    H   WR                            
Sbjct: 151 LRYYYLCDAGYPNAEGFLVQDRGQRYHLQEWRGAANAPTNAKEYFNTKHSSTRNVIECAF 210

Query: 125 ---SDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSD 184
               DN+TFR GYLAQL  +M EKL G  V   + I+ R++TLK+ +Q I EM GP CS 
Sbjct: 211 GVLKDNDTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMQGPACSG 270

Query: 185 FGWNDEFKCIEAEKETFDLW--NYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGE 240
            GWNDE KCI  +KE FD W  ++P AKG+ NKSF ++++LTYVFG++R I R +E   +
Sbjct: 271 SGWNDEEKCIIGKKELFDNWVRSHPAAKGLLNKSFLYYDELTYVFGRNRVISRFAETFAD 330

[Close]

BLAST of Spg006872 vs. ExPASy TrEMBL
Match: A0A5A7TS15 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001490 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 3.0e-51
Identity = 118/283 (41.70%), Postives = 157/283 (55.48%), Query Frame = 0


Query: 5   NCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSV 64
           NCL  LD TYIKVNV   D P +RTRKGEI TNVL V DTKGDF++VL  WEGSA DS +
Sbjct: 91  NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRI 150

Query: 65  LR------------DALSKRTQSSEVHAGGWR---------------------------- 124
           LR            +    + +    H   WR                            
Sbjct: 151 LRYYYLCDAGYPNAEGFLVQDRGQRYHLQEWRGAANAPTNAKEYFNTKHSSTRNVIECAF 210

Query: 125 ---SDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSD 184
               DN+TFR GYLAQL  +M EKL G  V   + I+ R++TLK+ +Q I EM GP CS 
Sbjct: 211 GVLKDNDTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMQGPACSG 270

Query: 185 FGWNDEFKCIEAEKETFDLW--NYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGE 240
            GWNDE KCI  +KE FD W  ++P AKG+ NKSF ++++LTYVFG++R I R +E   +
Sbjct: 271 SGWNDEEKCIIGKKELFDNWVRSHPAAKGLLNKSFLYYDELTYVFGRNRVISRFAETFAD 330

[Close]

BLAST of Spg006872 vs. ExPASy TrEMBL
Match: A0A5A7UCU1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001560 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 110/210 (52.38%), Postives = 133/210 (63.33%), Query Frame = 0


Query: 10  LDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDAL 69
           LD  YIK+NV   D  RYRT KGE+ TNVL V DTKGDFI+VL  WEGSA DS +LRDA+
Sbjct: 57  LDGMYIKINVIKSDRARYRTCKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDAI 116

Query: 70  SK-------RTQSSE---------------------VHAGGWRSDNETFRSGYLAQLEHL 129
           S+       R  SS                      V+ GGWRSDN TF  GYL QL  +
Sbjct: 117 SRPNGLKVPRQSSSRLPKHNWTKKEEAGLIECLVELVNVGGWRSDNRTFWLGYLNQLARM 176

Query: 130 MKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW 189
           M  K+ G ++   S I+SR++ LK+ +  I EM GP CS FGWNDE KCI  EKE FD W
Sbjct: 177 MALKIPGSNI-YASTIDSRIKLLKRMFHSIAEMRGPTCSGFGWNDEQKCIVVEKEFFDNW 236

Query: 190 NYPIAKGMRNKSFPHFEDLTYVFGKDRAIG 192
           ++P AKG+ NKSFPH+++L+YVFGKDRA G
Sbjct: 237 SHPAAKGLLNKSFPHYDELSYVFGKDRARG 265

[Close]

BLAST of Spg006872 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 9.2e-48
Identity = 122/336 (36.31%), Postives = 150/336 (44.64%), Query Frame = 0


Query: 4   QNCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSS 63
           +NCL  LD TYIKVNV   D  RYRTRKGE+ TNVL VYDTKGDF++VL  WEGSA DS 
Sbjct: 162 ENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSR 221

Query: 64  VLRDALS----------------------------------------------------- 123
           +LRDALS                                                     
Sbjct: 222 ILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFF 281

Query: 124 ------------------------------------------------------------ 183
                                                                       
Sbjct: 282 NMKHSSARNVIERAFGVLKGRWAILRGKSYHPVEVQCHTILACCLLHNLINREMTNFDIE 341

Query: 184 -------------KRTQSSE--------VHAGGWRSDNETFRSGYLAQLEHLMKEKLFGW 206
                        K T + E        V+AGGWRSDN TFR GYL QL  +M  K+ G 
Sbjct: 342 DNIVSMTSSSRLPKHTWTKEEEAGLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGC 401

[Close]

BLAST of Spg006872 vs. ExPASy TrEMBL
Match: A0A5D3DJT6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00250 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-47
Identity = 118/305 (38.69%), Postives = 153/305 (50.16%), Query Frame = 0


Query: 5   NCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSV 64
           NCL  LD TYI VNVS  D P +RT K EI TNVL + + KGDF++VL  W+GSAVDS +
Sbjct: 81  NCLGALDGTYINVNVSAADRPTFRTHKREIATNVLGLCNMKGDFVYVLAGWKGSAVDSRI 140

Query: 65  LRDALSK----------------------------RTQSSEVHA---------------- 124
           LRDAL++                            R Q    +                 
Sbjct: 141 LRDALARENGLQVPKGYYYLCDAGYPNIEGFLDPYRGQREMAYCDDVGDVDKGDSAYYVN 200

Query: 125 ---------------------------GGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPV 184
                                      GGW+SDN TFR GYLAQL  +M EKL G  V  
Sbjct: 201 LNPCPEACLDGGGGGHSCGVFNGVGVNGGWKSDNCTFRPGYLAQLVRMMVEKLPGCRVRA 260

Query: 185 QSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW--NYPIAKGMRN 235
            + I+ R++TLK+ +Q I EM GP CS FGWNDE KCI AEKE F+ W  +YP  KG+ N
Sbjct: 261 TTVIDCRIKTLKRTFQAISEMWGPACSGFGWNDEEKCIIAEKELFENWVRSYPAVKGLLN 320

[Close]

BLAST of Spg006872 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 7.5e-10
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 4  QNCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSS 63
          ++C+  +D+T+I   VS    P +R RKG+I  N+L   +   +F++VL  WEGSA DS 
Sbjct: 23 KDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSK 82

Query: 64 VLRDALSKRT 74
          VL DAL++ +
Sbjct: 83 VLNDALTRNS 92

[Close]

BLAST of Spg006872 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 1.5e-05
Identity = 26/71 (36.62%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 4   QNCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSS 63
           ++C+ V+D  +I V V V +   +R   G +  NVL        F +VL  WEGSA D  
Sbjct: 141 KDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQ 200

Query: 64  VLRDALSKRTQ 75
           VL  AL++R +
Sbjct: 201 VLNAALTRRNK 211

[Close]

BLAST of Spg006872 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 6.1e-04
Identity = 28/111 (25.23%), Postives = 50/111 (45.05%), Query Frame = 0


Query: 113 VQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLWN-----YPIAK 172
           V  N    +R L    + ++E  G     F W+     + A+    D+WN     +P A+
Sbjct: 377 VLKNRYKHLRRLYNDIKFLLEQNG-----FSWDARRDMVIADD---DIWNTYIQAHPEAR 436

Query: 173 GMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVPKDEVDLNGSSEND 219
             R K+ P + +L ++FGK+ + GR +  + +     P + V +N S   D
Sbjct: 437 SYRVKTIPSYPNLCFIFGKETSDGRYTR-LAQAFDPSPAETVRMNESGSTD 478

The following BLAST results are available for this feature:

BLAST of Spg006872 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045638.1	6.3e-51	41.70	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK02619.1	6.3e-51	41.70	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0052026.1	3.1e-50	52.38	retrotransposon protein [Cucumis melo var. makuwa] >TYK04534.1 retrotransposon p...	[more]
TYK04867.1	4.1e-50	48.48	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0034843.1	1.9e-47	36.31	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg006872 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg006872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BWV2	3.0e-51	41.70	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TS15	3.0e-51	41.70	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UCU1	1.5e-50	52.38	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SWD8	9.2e-48	36.31	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DJT6	1.2e-47	38.69	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg006872 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28950.1	7.5e-10	41.43	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G41980.1	1.5e-05	36.62	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT2G24960.2	6.1e-04	25.23	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 79..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006872.1	Spg006872.1	mRNA