Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAACGACCAGAAGAGTTAGGAAAGTCAATGATCCTAACTATCGCAAGTATCACCAAGTTGTTAGCCACCCGGTGGAGAAATGTCTTGTACTGAATGAACTAATCCTTAAATTGGATCGCGAGAAGAGAATTGAGTTGGACCTTGATGAGGTGGCTCAAGCGAATCATGCGACAATAACGACAAATGTAGGGGATAAAATTCCCCTAATATCCTTATGTGATCATGAAGAAAGGTTGATTCAATTTGGGACCCTTGAGCATATAGTTGTTCGGTTCCAAAAAGAAGCCATAATGAAGGGATTCCAAGAAAAATATGATTCCATTGAAGATGACAACGAAGGTTAGACCATTGTCGTTCGTCGCAAAAGGCGACAACAAAGTTATGCTCAAAAGGAGTCCTGCTTATTTCAGGATAGTAAAAGAAAAATTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGACAAGGAGGCCAAAACCCGTTGTGGAGGAAAGTGAAGATTTCTTTTACCCTCCGCCAGAATACTTCCCAAGACGCTATCTCGATGACGATCAAGGAGAGGCGTTTGAAACTGTTACATGTCATATTGTGGACTTGGTGGAAGATAATGATGTTCCTTCTAGCTCATCGAGAACGGTGACAGGTCCAGGAGACTTATCCTCCTACAGTATAAAGGACCTATTGGCACTCCCTTAG
mRNA sequence
ATGCAAACGACCAGAAGAGTTAGGAAAGTCAATGATCCTAACTATCGCAAGTATCACCAAGTTGTTAGCCACCCGGTGGAGAAATGTCTTGTACTGAATGAACTAATCCTTAAATTGGATCGCGAGAAGAGAATTGAGTTGGACCTTGATGAGGTGGCTCAAGCGAATCATGCGACAATAACGACAAATGATAGTAAAAGAAAAATTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGACAAGGAGGCCAAAACCCGTTGTGGAGGAAAGTGAAGATTTCTTTTACCCTCCGCCAGAATACTTCCCAAGACGCTATCTCGATGACGATCAAGGAGAGGCGTTTGAAACTGTTACATGTCATATTGTGGACTTGGTGGAAGATAATGATGTTCCTTCTAGCTCATCGAGAACGGTGACAGGTCCAGGAGACTTATCCTCCTACAGTATAAAGGACCTATTGGCACTCCCTTAG
Coding sequence (CDS)
ATGCAAACGACCAGAAGAGTTAGGAAAGTCAATGATCCTAACTATCGCAAGTATCACCAAGTTGTTAGCCACCCGGTGGAGAAATGTCTTGTACTGAATGAACTAATCCTTAAATTGGATCGCGAGAAGAGAATTGAGTTGGACCTTGATGAGGTGGCTCAAGCGAATCATGCGACAATAACGACAAATGATAGTAAAAGAAAAATTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGACAAGGAGGCCAAAACCCGTTGTGGAGGAAAGTGAAGATTTCTTTTACCCTCCGCCAGAATACTTCCCAAGACGCTATCTCGATGACGATCAAGGAGAGGCGTTTGAAACTGTTACATGTCATATTGTGGACTTGGTGGAAGATAATGATGTTCCTTCTAGCTCATCGAGAACGGTGACAGGTCCAGGAGACTTATCCTCCTACAGTATAAAGGACCTATTGGCACTCCCTTAG
Protein sequence
MQTTRRVRKVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEVAQANHATITTNDSKRKIKSQKKKGKKKTRRPKPVVEESEDFFYPPPEYFPRRYLDDDQGEAFETVTCHIVDLVEDNDVPSSSSRTVTGPGDLSSYSIKDLLALP
Homology
BLAST of Spg004570 vs. NCBI nr
Match:
KAA0056790.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ99914.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 112.1 bits (279), Expect = 4.4e-21
Identity = 76/202 (37.62%), Postives = 101/202 (50.00%), Query Frame = 0
Query: 6 RVRKVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEVAQANHATIT---- 65
+ KV+DPNY KYH+V+SHPVEKC VL ELIL+L REK+IELDL+EVAQ NHA +T
Sbjct: 49 QAEKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKKIELDLEEVAQTNHAAVTIMSE 108
Query: 66 -------------------------TNDSKRKI-----------------KSQKKKGKKK 125
T+ KRK ++QK + K K
Sbjct: 109 ALSSRLIFEQKESLIEEDDEGWIVVTHQKKRKSTPIQKESRFYRNYRRGNEAQKNEKKNK 168
Query: 126 TRRPKPVVEESEDFFYPP-----PEYFPRRYLDDDQGEAFETVTCHIVDLVEDNDVPSSS 157
TR+ K EE +DF P ++FP R+L D Q E V CH ++ E+ +P
Sbjct: 169 TRKLKLRHEEDKDFSRPQRLVTLADFFPTRFLCDHQDENPRVVACHAINATEEESIPLRL 228
BLAST of Spg004570 vs. NCBI nr
Match:
KAA0065552.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 110.5 bits (275), Expect = 1.3e-20
Identity = 70/165 (42.42%), Postives = 95/165 (57.58%), Query Frame = 0
Query: 5 RRVRKVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEV-----AQANHAT 64
++ +NDPNY KYH V S PVE VL ELIL+L REK+IELDL+E +Q +
Sbjct: 330 KQAENINDPNYCKYHWVNSRPVENFFVLKELILRLAREKKIELDLEEEVTPEDSQGKERS 389
Query: 65 ITTNDS---KRKIKSQKKKGKKKTRRPKPVVEESEDFFYPP-----PEYFPRRYLDDDQG 124
+ ND KR K+Q K KKKTR+PK V +E +DF P ++FP R+L D Q
Sbjct: 390 VEENDEGNYKRGNKAQNNKNKKKTRKPKLVHKEDKDFPRPQSLVTLADFFPTRFLCDHQD 449
Query: 125 EAFETVTCHIVDLVEDNDVPSSSSRTVTGPGDLSSYSIKDLLALP 157
E E V CH ++ ++ +P S DLS +++ DLL+LP
Sbjct: 450 ENPEVVECHAINATKEESIPPRSLEEEGVSKDLSRFNVDDLLSLP 494
BLAST of Spg004570 vs. NCBI nr
Match:
XP_031742390.1 (uncharacterized protein LOC116401672 [Cucumis sativus])
HSP 1 Score: 110.2 bits (274), Expect = 1.7e-20
Identity = 70/155 (45.16%), Postives = 93/155 (60.00%), Query Frame = 0
Query: 9 KVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEVAQANHATIT---TNDS 68
KV+DPNY KYH+V+SHPVEKC VL ELIL+L REKRIELDL+EVAQ NHA +T S
Sbjct: 269 KVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASS 328
Query: 69 KRKIKSQKKKGKKKTRRPKPVVEESEDFFYPPPEYFPRRYLDDDQG----EAFETVTCHI 128
R I Q+K + VV+ ++ Y P+ R +DD+G E E V CH
Sbjct: 329 SRLIFEQRKSLVQFGTFEPIVVQFFQEISYEDPQGEKRPIEEDDEGWIVDEDPEVVACHA 388
Query: 129 VDLVEDNDVPSSSSRTVTGPGDLSSYSIKDLLALP 157
++ E+ +P S DLS ++++DLL+LP
Sbjct: 389 INTTEEEIIPPRSLEGEGVSKDLSRFNVEDLLSLP 423
BLAST of Spg004570 vs. NCBI nr
Match:
XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])
HSP 1 Score: 110.2 bits (274), Expect = 1.7e-20
Identity = 70/155 (45.16%), Postives = 93/155 (60.00%), Query Frame = 0
Query: 9 KVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEVAQANHATIT---TNDS 68
KV+DPNY KYH+V+SHPVEKC VL ELIL+L REKRIELDL+EVAQ NHA +T S
Sbjct: 470 KVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASS 529
Query: 69 KRKIKSQKKKGKKKTRRPKPVVEESEDFFYPPPEYFPRRYLDDDQG----EAFETVTCHI 128
R I Q+K + VV+ ++ Y P+ R +DD+G E E V CH
Sbjct: 530 SRLIFEQRKSLVQFGTFEPIVVQFFQEISYEDPQGEKRPIEEDDEGWIVDEDPEVVACHA 589
Query: 129 VDLVEDNDVPSSSSRTVTGPGDLSSYSIKDLLALP 157
++ E+ +P S DLS ++++DLL+LP
Sbjct: 590 INTTEEEIIPPRSLEGEGVSKDLSRFNVEDLLSLP 624
BLAST of Spg004570 vs. NCBI nr
Match:
XP_031742888.1 (uncharacterized protein LOC116404510 [Cucumis sativus])
HSP 1 Score: 110.2 bits (274), Expect = 1.7e-20
Identity = 70/155 (45.16%), Postives = 93/155 (60.00%), Query Frame = 0
Query: 9 KVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEVAQANHATIT---TNDS 68
KV+DPNY KYH+V+SHPVEKC VL ELIL+L REKRIELDL+EVAQ NHA +T S
Sbjct: 112 KVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASS 171
Query: 69 KRKIKSQKKKGKKKTRRPKPVVEESEDFFYPPPEYFPRRYLDDDQG----EAFETVTCHI 128
R I Q+K + VV+ ++ Y P+ R +DD+G E E V CH
Sbjct: 172 SRLIFEQRKSLVQFGTFEPIVVQFFQEISYEDPQGEKRPIEEDDEGWIVDEDPEVVACHA 231
Query: 129 VDLVEDNDVPSSSSRTVTGPGDLSSYSIKDLLALP 157
++ E+ +P S DLS ++++DLL+LP
Sbjct: 232 INTTEEEIIPPRSLEGEGVSKDLSRFNVEDLLSLP 266
BLAST of Spg004570 vs. ExPASy TrEMBL
Match:
A0A5D3BLK2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00350 PE=4 SV=1)
HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 76/202 (37.62%), Postives = 101/202 (50.00%), Query Frame = 0
Query: 6 RVRKVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEVAQANHATIT---- 65
+ KV+DPNY KYH+V+SHPVEKC VL ELIL+L REK+IELDL+EVAQ NHA +T
Sbjct: 49 QAEKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKKIELDLEEVAQTNHAAVTIMSE 108
Query: 66 -------------------------TNDSKRKI-----------------KSQKKKGKKK 125
T+ KRK ++QK + K K
Sbjct: 109 ALSSRLIFEQKESLIEEDDEGWIVVTHQKKRKSTPIQKESRFYRNYRRGNEAQKNEKKNK 168
Query: 126 TRRPKPVVEESEDFFYPP-----PEYFPRRYLDDDQGEAFETVTCHIVDLVEDNDVPSSS 157
TR+ K EE +DF P ++FP R+L D Q E V CH ++ E+ +P
Sbjct: 169 TRKLKLRHEEDKDFSRPQRLVTLADFFPTRFLCDHQDENPRVVACHAINATEEESIPLRL 228
BLAST of Spg004570 vs. ExPASy TrEMBL
Match:
A0A5A7VB81 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00580 PE=4 SV=1)
HSP 1 Score: 110.5 bits (275), Expect = 6.2e-21
Identity = 70/165 (42.42%), Postives = 95/165 (57.58%), Query Frame = 0
Query: 5 RRVRKVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEV-----AQANHAT 64
++ +NDPNY KYH V S PVE VL ELIL+L REK+IELDL+E +Q +
Sbjct: 330 KQAENINDPNYCKYHWVNSRPVENFFVLKELILRLAREKKIELDLEEEVTPEDSQGKERS 389
Query: 65 ITTNDS---KRKIKSQKKKGKKKTRRPKPVVEESEDFFYPP-----PEYFPRRYLDDDQG 124
+ ND KR K+Q K KKKTR+PK V +E +DF P ++FP R+L D Q
Sbjct: 390 VEENDEGNYKRGNKAQNNKNKKKTRKPKLVHKEDKDFPRPQSLVTLADFFPTRFLCDHQD 449
Query: 125 EAFETVTCHIVDLVEDNDVPSSSSRTVTGPGDLSSYSIKDLLALP 157
E E V CH ++ ++ +P S DLS +++ DLL+LP
Sbjct: 450 ENPEVVECHAINATKEESIPPRSLEEEGVSKDLSRFNVDDLLSLP 494
BLAST of Spg004570 vs. ExPASy TrEMBL
Match:
A0A5D3E029 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00310 PE=4 SV=1)
HSP 1 Score: 108.6 bits (270), Expect = 2.4e-20
Identity = 70/165 (42.42%), Postives = 95/165 (57.58%), Query Frame = 0
Query: 5 RRVRKVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEV-----AQANHAT 64
++ K+NDPNY KYH V S PVE VL ELIL+L REK+IELDL+E +Q +
Sbjct: 330 KQAEKINDPNYCKYHWVNSRPVENFFVLKELILRLAREKKIELDLEEEVTPEDSQGKERS 389
Query: 65 ITTNDS---KRKIKSQKKKGKKKTRRPKPVVEESEDFFYPP-----PEYFPRRYLDDDQG 124
+ ND KR K+Q K KKKTR+ K V +E +DF P ++FP R+L D Q
Sbjct: 390 VEENDEGNYKRGNKAQNNKNKKKTRKLKLVHKEDKDFPRPQSLVTLADFFPTRFLCDHQD 449
Query: 125 EAFETVTCHIVDLVEDNDVPSSSSRTVTGPGDLSSYSIKDLLALP 157
E E V CH ++ ++ +P S DLS +++ DLL+LP
Sbjct: 450 ENPEVVECHAINATKEESIPPRSLEEEGVSKDLSRFNVDDLLSLP 494
BLAST of Spg004570 vs. ExPASy TrEMBL
Match:
A0A5A7SX42 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00150 PE=4 SV=1)
HSP 1 Score: 106.7 bits (265), Expect = 9.0e-20
Identity = 76/204 (37.25%), Postives = 99/204 (48.53%), Query Frame = 0
Query: 9 KVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEVAQANHATIT------- 68
KV+DPNY KYH V+ H VEKC VL ELIL+L REK+IELDL+EVAQ N+A +T
Sbjct: 293 KVDDPNYYKYHWVIGHSVEKCFVLKELILRLAREKKIELDLEEVAQTNYAAVTIMSEALL 352
Query: 69 --------------------------------TNDSKRKI------------KSQKKKGK 128
+ + +R I K+QK K K
Sbjct: 353 PRLIFEQRERLVQFGTLELIVVQFLQEVALEDSQEKERSIEEDDEGNYRRGNKAQKNKKK 412
Query: 129 KKTRRPKPVVEESEDFFYPP-----PEYFPRRYLDDDQGEAFETVTCHIVDLVEDNDVPS 157
KKTR+ K V EE +DF P ++FP R+L D Q E V CH + E+ +P
Sbjct: 413 KKTRKLKLVHEEDKDFPQPQRLVTLVDFFPTRFLCDHQDENPGVVACHAFNATEEETIPP 472
BLAST of Spg004570 vs. ExPASy TrEMBL
Match:
A0A5D3BYA0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001110 PE=4 SV=1)
HSP 1 Score: 105.9 bits (263), Expect = 1.5e-19
Identity = 75/205 (36.59%), Postives = 99/205 (48.29%), Query Frame = 0
Query: 6 RVRKVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEVAQANHA------- 65
+ KV+D NY KYH+ +SHP+EKC VL ELIL+L EK+IELDL+EVAQ NHA
Sbjct: 109 QAEKVDDHNYCKYHRFISHPIEKCFVLKELILRLAHEKKIELDLEEVAQTNHAATMIMSE 168
Query: 66 -------------------------TITTNDSKRKI-----------------KSQKKKG 125
T+ T KRK K+QK K
Sbjct: 169 ALSPRLIFEQRESLVQLIEEDDEGWTVVTCRKKRKSTLIHKEPRFYRNYRRGNKAQKNKK 228
Query: 126 KKKTRRPKPVVEESEDF-----FYPPPEYFPRRYLDDDQGEAFETVTCHIVDLVEDNDVP 157
KKKT++ K V +E +DF ++FP R+L D Q E V CH +D +E +P
Sbjct: 229 KKKTQKLKLVHKEDKDFPRTQRLVTLADFFPTRFLGDHQDENPGVVACHGIDAIEKESIP 288
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0056790.1 | 4.4e-21 | 37.62 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ99914.1 ty3-gyp... | [more] |
KAA0065552.1 | 1.3e-20 | 42.42 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
XP_031742390.1 | 1.7e-20 | 45.16 | uncharacterized protein LOC116401672 [Cucumis sativus] | [more] |
XP_031742199.1 | 1.7e-20 | 45.16 | uncharacterized protein LOC105435721 [Cucumis sativus] | [more] |
XP_031742888.1 | 1.7e-20 | 45.16 | uncharacterized protein LOC116404510 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BLK2 | 2.1e-21 | 37.62 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7VB81 | 6.2e-21 | 42.42 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
A0A5D3E029 | 2.4e-20 | 42.42 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5A7SX42 | 9.0e-20 | 37.25 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3BYA0 | 1.5e-19 | 36.59 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
Match Name | E-value | Identity | Description | |