Spg004570 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg004570
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationscaffold9: 12281492 .. 12282187 (+)
RNA-Seq ExpressionSpg004570
SyntenySpg004570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAACGACCAGAAGAGTTAGGAAAGTCAATGATCCTAACTATCGCAAGTATCACCAAGTTGTTAGCCACCCGGTGGAGAAATGTCTTGTACTGAATGAACTAATCCTTAAATTGGATCGCGAGAAGAGAATTGAGTTGGACCTTGATGAGGTGGCTCAAGCGAATCATGCGACAATAACGACAAATGTAGGGGATAAAATTCCCCTAATATCCTTATGTGATCATGAAGAAAGGTTGATTCAATTTGGGACCCTTGAGCATATAGTTGTTCGGTTCCAAAAAGAAGCCATAATGAAGGGATTCCAAGAAAAATATGATTCCATTGAAGATGACAACGAAGGTTAGACCATTGTCGTTCGTCGCAAAAGGCGACAACAAAGTTATGCTCAAAAGGAGTCCTGCTTATTTCAGGATAGTAAAAGAAAAATTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGACAAGGAGGCCAAAACCCGTTGTGGAGGAAAGTGAAGATTTCTTTTACCCTCCGCCAGAATACTTCCCAAGACGCTATCTCGATGACGATCAAGGAGAGGCGTTTGAAACTGTTACATGTCATATTGTGGACTTGGTGGAAGATAATGATGTTCCTTCTAGCTCATCGAGAACGGTGACAGGTCCAGGAGACTTATCCTCCTACAGTATAAAGGACCTATTGGCACTCCCTTAG

mRNA sequence

ATGCAAACGACCAGAAGAGTTAGGAAAGTCAATGATCCTAACTATCGCAAGTATCACCAAGTTGTTAGCCACCCGGTGGAGAAATGTCTTGTACTGAATGAACTAATCCTTAAATTGGATCGCGAGAAGAGAATTGAGTTGGACCTTGATGAGGTGGCTCAAGCGAATCATGCGACAATAACGACAAATGATAGTAAAAGAAAAATTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGACAAGGAGGCCAAAACCCGTTGTGGAGGAAAGTGAAGATTTCTTTTACCCTCCGCCAGAATACTTCCCAAGACGCTATCTCGATGACGATCAAGGAGAGGCGTTTGAAACTGTTACATGTCATATTGTGGACTTGGTGGAAGATAATGATGTTCCTTCTAGCTCATCGAGAACGGTGACAGGTCCAGGAGACTTATCCTCCTACAGTATAAAGGACCTATTGGCACTCCCTTAG

Coding sequence (CDS)

ATGCAAACGACCAGAAGAGTTAGGAAAGTCAATGATCCTAACTATCGCAAGTATCACCAAGTTGTTAGCCACCCGGTGGAGAAATGTCTTGTACTGAATGAACTAATCCTTAAATTGGATCGCGAGAAGAGAATTGAGTTGGACCTTGATGAGGTGGCTCAAGCGAATCATGCGACAATAACGACAAATGATAGTAAAAGAAAAATTAAGTCTCAAAAGAAGAAAGGAAAAAAGAAGACAAGGAGGCCAAAACCCGTTGTGGAGGAAAGTGAAGATTTCTTTTACCCTCCGCCAGAATACTTCCCAAGACGCTATCTCGATGACGATCAAGGAGAGGCGTTTGAAACTGTTACATGTCATATTGTGGACTTGGTGGAAGATAATGATGTTCCTTCTAGCTCATCGAGAACGGTGACAGGTCCAGGAGACTTATCCTCCTACAGTATAAAGGACCTATTGGCACTCCCTTAG

Protein sequence

MQTTRRVRKVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEVAQANHATITTNDSKRKIKSQKKKGKKKTRRPKPVVEESEDFFYPPPEYFPRRYLDDDQGEAFETVTCHIVDLVEDNDVPSSSSRTVTGPGDLSSYSIKDLLALP
Homology
BLAST of Spg004570 vs. NCBI nr
Match: KAA0056790.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ99914.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 4.4e-21
Identity = 76/202 (37.62%), Postives = 101/202 (50.00%), Query Frame = 0

Query: 6   RVRKVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEVAQANHATIT---- 65
           +  KV+DPNY KYH+V+SHPVEKC VL ELIL+L REK+IELDL+EVAQ NHA +T    
Sbjct: 49  QAEKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKKIELDLEEVAQTNHAAVTIMSE 108

Query: 66  -------------------------TNDSKRKI-----------------KSQKKKGKKK 125
                                    T+  KRK                  ++QK + K K
Sbjct: 109 ALSSRLIFEQKESLIEEDDEGWIVVTHQKKRKSTPIQKESRFYRNYRRGNEAQKNEKKNK 168

Query: 126 TRRPKPVVEESEDFFYPP-----PEYFPRRYLDDDQGEAFETVTCHIVDLVEDNDVPSSS 157
           TR+ K   EE +DF  P       ++FP R+L D Q E    V CH ++  E+  +P   
Sbjct: 169 TRKLKLRHEEDKDFSRPQRLVTLADFFPTRFLCDHQDENPRVVACHAINATEEESIPLRL 228

BLAST of Spg004570 vs. NCBI nr
Match: KAA0065552.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-20
Identity = 70/165 (42.42%), Postives = 95/165 (57.58%), Query Frame = 0

Query: 5   RRVRKVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEV-----AQANHAT 64
           ++   +NDPNY KYH V S PVE   VL ELIL+L REK+IELDL+E      +Q    +
Sbjct: 330 KQAENINDPNYCKYHWVNSRPVENFFVLKELILRLAREKKIELDLEEEVTPEDSQGKERS 389

Query: 65  ITTNDS---KRKIKSQKKKGKKKTRRPKPVVEESEDFFYPP-----PEYFPRRYLDDDQG 124
           +  ND    KR  K+Q  K KKKTR+PK V +E +DF  P       ++FP R+L D Q 
Sbjct: 390 VEENDEGNYKRGNKAQNNKNKKKTRKPKLVHKEDKDFPRPQSLVTLADFFPTRFLCDHQD 449

Query: 125 EAFETVTCHIVDLVEDNDVPSSSSRTVTGPGDLSSYSIKDLLALP 157
           E  E V CH ++  ++  +P  S        DLS +++ DLL+LP
Sbjct: 450 ENPEVVECHAINATKEESIPPRSLEEEGVSKDLSRFNVDDLLSLP 494

BLAST of Spg004570 vs. NCBI nr
Match: XP_031742390.1 (uncharacterized protein LOC116401672 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-20
Identity = 70/155 (45.16%), Postives = 93/155 (60.00%), Query Frame = 0

Query: 9   KVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEVAQANHATIT---TNDS 68
           KV+DPNY KYH+V+SHPVEKC VL ELIL+L REKRIELDL+EVAQ NHA +T      S
Sbjct: 269 KVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASS 328

Query: 69  KRKIKSQKKKGKKKTRRPKPVVEESEDFFYPPPEYFPRRYLDDDQG----EAFETVTCHI 128
            R I  Q+K   +       VV+  ++  Y  P+   R   +DD+G    E  E V CH 
Sbjct: 329 SRLIFEQRKSLVQFGTFEPIVVQFFQEISYEDPQGEKRPIEEDDEGWIVDEDPEVVACHA 388

Query: 129 VDLVEDNDVPSSSSRTVTGPGDLSSYSIKDLLALP 157
           ++  E+  +P  S        DLS ++++DLL+LP
Sbjct: 389 INTTEEEIIPPRSLEGEGVSKDLSRFNVEDLLSLP 423

BLAST of Spg004570 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-20
Identity = 70/155 (45.16%), Postives = 93/155 (60.00%), Query Frame = 0

Query: 9   KVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEVAQANHATIT---TNDS 68
           KV+DPNY KYH+V+SHPVEKC VL ELIL+L REKRIELDL+EVAQ NHA +T      S
Sbjct: 470 KVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASS 529

Query: 69  KRKIKSQKKKGKKKTRRPKPVVEESEDFFYPPPEYFPRRYLDDDQG----EAFETVTCHI 128
            R I  Q+K   +       VV+  ++  Y  P+   R   +DD+G    E  E V CH 
Sbjct: 530 SRLIFEQRKSLVQFGTFEPIVVQFFQEISYEDPQGEKRPIEEDDEGWIVDEDPEVVACHA 589

Query: 129 VDLVEDNDVPSSSSRTVTGPGDLSSYSIKDLLALP 157
           ++  E+  +P  S        DLS ++++DLL+LP
Sbjct: 590 INTTEEEIIPPRSLEGEGVSKDLSRFNVEDLLSLP 624

BLAST of Spg004570 vs. NCBI nr
Match: XP_031742888.1 (uncharacterized protein LOC116404510 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-20
Identity = 70/155 (45.16%), Postives = 93/155 (60.00%), Query Frame = 0

Query: 9   KVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEVAQANHATIT---TNDS 68
           KV+DPNY KYH+V+SHPVEKC VL ELIL+L REKRIELDL+EVAQ NHA +T      S
Sbjct: 112 KVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKRIELDLEEVAQTNHAEVTIMSEASS 171

Query: 69  KRKIKSQKKKGKKKTRRPKPVVEESEDFFYPPPEYFPRRYLDDDQG----EAFETVTCHI 128
            R I  Q+K   +       VV+  ++  Y  P+   R   +DD+G    E  E V CH 
Sbjct: 172 SRLIFEQRKSLVQFGTFEPIVVQFFQEISYEDPQGEKRPIEEDDEGWIVDEDPEVVACHA 231

Query: 129 VDLVEDNDVPSSSSRTVTGPGDLSSYSIKDLLALP 157
           ++  E+  +P  S        DLS ++++DLL+LP
Sbjct: 232 INTTEEEIIPPRSLEGEGVSKDLSRFNVEDLLSLP 266

BLAST of Spg004570 vs. ExPASy TrEMBL
Match: A0A5D3BLK2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00350 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 76/202 (37.62%), Postives = 101/202 (50.00%), Query Frame = 0

Query: 6   RVRKVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEVAQANHATIT---- 65
           +  KV+DPNY KYH+V+SHPVEKC VL ELIL+L REK+IELDL+EVAQ NHA +T    
Sbjct: 49  QAEKVDDPNYCKYHRVISHPVEKCFVLKELILRLAREKKIELDLEEVAQTNHAAVTIMSE 108

Query: 66  -------------------------TNDSKRKI-----------------KSQKKKGKKK 125
                                    T+  KRK                  ++QK + K K
Sbjct: 109 ALSSRLIFEQKESLIEEDDEGWIVVTHQKKRKSTPIQKESRFYRNYRRGNEAQKNEKKNK 168

Query: 126 TRRPKPVVEESEDFFYPP-----PEYFPRRYLDDDQGEAFETVTCHIVDLVEDNDVPSSS 157
           TR+ K   EE +DF  P       ++FP R+L D Q E    V CH ++  E+  +P   
Sbjct: 169 TRKLKLRHEEDKDFSRPQRLVTLADFFPTRFLCDHQDENPRVVACHAINATEEESIPLRL 228

BLAST of Spg004570 vs. ExPASy TrEMBL
Match: A0A5A7VB81 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00580 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.2e-21
Identity = 70/165 (42.42%), Postives = 95/165 (57.58%), Query Frame = 0

Query: 5   RRVRKVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEV-----AQANHAT 64
           ++   +NDPNY KYH V S PVE   VL ELIL+L REK+IELDL+E      +Q    +
Sbjct: 330 KQAENINDPNYCKYHWVNSRPVENFFVLKELILRLAREKKIELDLEEEVTPEDSQGKERS 389

Query: 65  ITTNDS---KRKIKSQKKKGKKKTRRPKPVVEESEDFFYPP-----PEYFPRRYLDDDQG 124
           +  ND    KR  K+Q  K KKKTR+PK V +E +DF  P       ++FP R+L D Q 
Sbjct: 390 VEENDEGNYKRGNKAQNNKNKKKTRKPKLVHKEDKDFPRPQSLVTLADFFPTRFLCDHQD 449

Query: 125 EAFETVTCHIVDLVEDNDVPSSSSRTVTGPGDLSSYSIKDLLALP 157
           E  E V CH ++  ++  +P  S        DLS +++ DLL+LP
Sbjct: 450 ENPEVVECHAINATKEESIPPRSLEEEGVSKDLSRFNVDDLLSLP 494

BLAST of Spg004570 vs. ExPASy TrEMBL
Match: A0A5D3E029 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00310 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.4e-20
Identity = 70/165 (42.42%), Postives = 95/165 (57.58%), Query Frame = 0

Query: 5   RRVRKVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEV-----AQANHAT 64
           ++  K+NDPNY KYH V S PVE   VL ELIL+L REK+IELDL+E      +Q    +
Sbjct: 330 KQAEKINDPNYCKYHWVNSRPVENFFVLKELILRLAREKKIELDLEEEVTPEDSQGKERS 389

Query: 65  ITTNDS---KRKIKSQKKKGKKKTRRPKPVVEESEDFFYPP-----PEYFPRRYLDDDQG 124
           +  ND    KR  K+Q  K KKKTR+ K V +E +DF  P       ++FP R+L D Q 
Sbjct: 390 VEENDEGNYKRGNKAQNNKNKKKTRKLKLVHKEDKDFPRPQSLVTLADFFPTRFLCDHQD 449

Query: 125 EAFETVTCHIVDLVEDNDVPSSSSRTVTGPGDLSSYSIKDLLALP 157
           E  E V CH ++  ++  +P  S        DLS +++ DLL+LP
Sbjct: 450 ENPEVVECHAINATKEESIPPRSLEEEGVSKDLSRFNVDDLLSLP 494

BLAST of Spg004570 vs. ExPASy TrEMBL
Match: A0A5A7SX42 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00150 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 9.0e-20
Identity = 76/204 (37.25%), Postives = 99/204 (48.53%), Query Frame = 0

Query: 9   KVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEVAQANHATIT------- 68
           KV+DPNY KYH V+ H VEKC VL ELIL+L REK+IELDL+EVAQ N+A +T       
Sbjct: 293 KVDDPNYYKYHWVIGHSVEKCFVLKELILRLAREKKIELDLEEVAQTNYAAVTIMSEALL 352

Query: 69  --------------------------------TNDSKRKI------------KSQKKKGK 128
                                           + + +R I            K+QK K K
Sbjct: 353 PRLIFEQRERLVQFGTLELIVVQFLQEVALEDSQEKERSIEEDDEGNYRRGNKAQKNKKK 412

Query: 129 KKTRRPKPVVEESEDFFYPP-----PEYFPRRYLDDDQGEAFETVTCHIVDLVEDNDVPS 157
           KKTR+ K V EE +DF  P       ++FP R+L D Q E    V CH  +  E+  +P 
Sbjct: 413 KKTRKLKLVHEEDKDFPQPQRLVTLVDFFPTRFLCDHQDENPGVVACHAFNATEEETIPP 472

BLAST of Spg004570 vs. ExPASy TrEMBL
Match: A0A5D3BYA0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001110 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.5e-19
Identity = 75/205 (36.59%), Postives = 99/205 (48.29%), Query Frame = 0

Query: 6   RVRKVNDPNYRKYHQVVSHPVEKCLVLNELILKLDREKRIELDLDEVAQANHA------- 65
           +  KV+D NY KYH+ +SHP+EKC VL ELIL+L  EK+IELDL+EVAQ NHA       
Sbjct: 109 QAEKVDDHNYCKYHRFISHPIEKCFVLKELILRLAHEKKIELDLEEVAQTNHAATMIMSE 168

Query: 66  -------------------------TITTNDSKRKI-----------------KSQKKKG 125
                                    T+ T   KRK                  K+QK K 
Sbjct: 169 ALSPRLIFEQRESLVQLIEEDDEGWTVVTCRKKRKSTLIHKEPRFYRNYRRGNKAQKNKK 228

Query: 126 KKKTRRPKPVVEESEDF-----FYPPPEYFPRRYLDDDQGEAFETVTCHIVDLVEDNDVP 157
           KKKT++ K V +E +DF          ++FP R+L D Q E    V CH +D +E   +P
Sbjct: 229 KKKTQKLKLVHKEDKDFPRTQRLVTLADFFPTRFLGDHQDENPGVVACHGIDAIEKESIP 288

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0056790.14.4e-2137.62ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ99914.1 ty3-gyp... [more]
KAA0065552.11.3e-2042.42retrotransposon gag protein [Cucumis melo var. makuwa][more]
XP_031742390.11.7e-2045.16uncharacterized protein LOC116401672 [Cucumis sativus][more]
XP_031742199.11.7e-2045.16uncharacterized protein LOC105435721 [Cucumis sativus][more]
XP_031742888.11.7e-2045.16uncharacterized protein LOC116404510 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BLK22.1e-2137.62Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7VB816.2e-2142.42Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3E0292.4e-2042.42Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7SX429.0e-2037.25Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3BYA01.5e-1936.59Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg004570.1Spg004570.1mRNA