Spg004064 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg004064
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	STE20/SPS1-related proline-alanine-rich protein kinase-like
Location	scaffold4: 2840772 .. 2841047 (-)
RNA-Seq Expression	Spg004064
Synteny	Spg004064

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAGAAGTTTCGTCGTTCTCTTTCTTCTCCTCGCGTTGGTAGCTTCTTCGGCTACGGCGGCGCATCATCACTCGCACCCGAAGTCGCCGGCGCCGGCGCCTTCACCGGTCGCCGTGGAAGCTCCGTCGGTTCCACCGTCGTCGATTGCCGGAACTCCTATTGAGGCGCCTGCACCGGCGGCGAGCGGCGCCGGTTTTGCTTCGGGATTTGGTGTTGCTGGATCAATGGCTGTTGGTGTTGGAATCTTTGCTGCTGCTTTGTTCGTTTAG

mRNA sequence

ATGGCTTCCAGAAGTTTCGTCGTTCTCTTTCTTCTCCTCGCGTTGGTAGCTTCTTCGGCTACGGCGGCGCATCATCACTCGCACCCGAAGTCGCCGGCGCCGGCGCCTTCACCGGTCGCCGTGGAAGCTCCGTCGGTTCCACCGTCGTCGATTGCCGGAACTCCTATTGAGGCGCCTGCACCGGCGGCGAGCGGCGCCGGTTTTGCTTCGGGATTTGGTGTTGCTGGATCAATGGCTGTTGGTGTTGGAATCTTTGCTGCTGCTTTGTTCGTTTAG

Coding sequence (CDS)

ATGGCTTCCAGAAGTTTCGTCGTTCTCTTTCTTCTCCTCGCGTTGGTAGCTTCTTCGGCTACGGCGGCGCATCATCACTCGCACCCGAAGTCGCCGGCGCCGGCGCCTTCACCGGTCGCCGTGGAAGCTCCGTCGGTTCCACCGTCGTCGATTGCCGGAACTCCTATTGAGGCGCCTGCACCGGCGGCGAGCGGCGCCGGTTTTGCTTCGGGATTTGGTGTTGCTGGATCAATGGCTGTTGGTGTTGGAATCTTTGCTGCTGCTTTGTTCGTTTAG

Protein sequence

MASRSFVVLFLLLALVASSATAAHHHSHPKSPAPAPSPVAVEAPSVPPSSIAGTPIEAPAPAASGAGFASGFGVAGSMAVGVGIFAAALFV

Homology

[Close]

BLAST of Spg004064 vs. NCBI nr
Match: KGN43805.2 (hypothetical protein Csa_017194, partial [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 3.6e-23
Identity = 74/92 (80.43%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1   MASRSFVVLFLLLALVASSATAAHHHSHPKSPAPAPSPVAVEAPSVPPSSIAGTPIEAPA 60
           MASRSF+VL L+LALVASSATA HHHSHPKSPAPAPSP  VEAPSVPPSSI+GTP+EAPA
Sbjct: 90  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 149

Query: 61  PAASGAGFASGFGVAGSMAVGVGI-FAAALFV 92
           PAA+GAG      V+GSMAV VGI FAAALFV
Sbjct: 150 PAANGAGL-----VSGSMAVSVGIFFAAALFV 176

[Close]

BLAST of Spg004064 vs. NCBI nr
Match: XP_023554722.1 (uncharacterized protein LOC111811901 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.6 bits (231), Expect = 9.5e-16
Identity = 63/90 (70.00%), Postives = 69/90 (76.67%), Query Frame = 0


Query: 1  MASRSFVVLFLLLALVASSATAAHHHSHPKSPAPAPSPVAVEAPSVPPSSIAGTPIEAPA 60
          MASRSF+V+ LL+ALVAS A A HHH+H KSPAPAPSPV  EAP  P    A +P+ APA
Sbjct: 1  MASRSFLVVLLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEAPLAP----APSPVSAPA 60

Query: 61 PAASGAGFASGFGVAGSMAVGVGIFAAALF 91
          PA SGAG   G G AGSMAVGVGIFAAALF
Sbjct: 61 PAESGAG-VIGTGFAGSMAVGVGIFAAALF 85

[Close]

BLAST of Spg004064 vs. NCBI nr
Match: KAG6571852.1 (hypothetical protein SDJN03_28580, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.5 bits (223), Expect = 8.0e-15
Identity = 62/90 (68.89%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 1  MASRSFVVLFLLLALVASSATAAHHHSHPKSPAPAPSPVAVEAPSVPPSSIAGTPIEAPA 60
          MASRSF+V+ LL+ALVAS A A HHH+H KSPAPAPSPV  EA   P    A +P+ APA
Sbjct: 1  MASRSFLVVLLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEASLAP----APSPVSAPA 60

Query: 61 PAASGAGFASGFGVAGSMAVGVGIFAAALF 91
          PA SGAG   G G AGSMAVGVGIFAAALF
Sbjct: 61 PAESGAG-VIGTGFAGSMAVGVGIFAAALF 85

[Close]

BLAST of Spg004064 vs. NCBI nr
Match: XP_022952911.1 (STE20/SPS1-related proline-alanine-rich protein kinase-like [Cucurbita moschata])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 62/90 (68.89%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 1  MASRSFVVLFLLLALVASSATAAHHHSHPKSPAPAPSPVAVEAPSVPPSSIAGTPIEAPA 60
          MASRSF+V  LL+ALVAS A A HHH+H KSPAPAPSPV  EA   P    A +P+ APA
Sbjct: 1  MASRSFLVALLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEASLAP----APSPVSAPA 60

Query: 61 PAASGAGFASGFGVAGSMAVGVGIFAAALF 91
          PA SGAG   G G AGSMAVGVGIFAAALF
Sbjct: 61 PAESGAG-VIGTGFAGSMAVGVGIFAAALF 85

[Close]

BLAST of Spg004064 vs. ExPASy TrEMBL
Match: A0A0A0K427 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064050 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.7e-23
Identity = 74/92 (80.43%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 1  MASRSFVVLFLLLALVASSATAAHHHSHPKSPAPAPSPVAVEAPSVPPSSIAGTPIEAPA 60
          MASRSF+VL L+LALVASSATA HHHSHPKSPAPAPSP  VEAPSVPPSSI+GTP+EAPA
Sbjct: 1  MASRSFLVLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPA 60

Query: 61 PAASGAGFASGFGVAGSMAVGVGI-FAAALFV 92
          PAA+GAG      V+GSMAV VGI FAAALFV
Sbjct: 61 PAANGAGL-----VSGSMAVSVGIFFAAALFV 87

[Close]

BLAST of Spg004064 vs. ExPASy TrEMBL
Match: A0A6J1GLJ6 (STE20/SPS1-related proline-alanine-rich protein kinase-like OS=Cucurbita moschata OX=3662 GN=LOC111455452 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.6e-15
Identity = 62/90 (68.89%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 1  MASRSFVVLFLLLALVASSATAAHHHSHPKSPAPAPSPVAVEAPSVPPSSIAGTPIEAPA 60
          MASRSF+V  LL+ALVAS A A HHH+H KSPAPAPSPV  EA   P    A +P+ APA
Sbjct: 1  MASRSFLVALLLVALVASPAMAGHHHTHSKSPAPAPSPVVSEASLAP----APSPVSAPA 60

Query: 61 PAASGAGFASGFGVAGSMAVGVGIFAAALF 91
          PA SGAG   G G AGSMAVGVGIFAAALF
Sbjct: 61 PAESGAG-VIGTGFAGSMAVGVGIFAAALF 85

The following BLAST results are available for this feature:

BLAST of Spg004064 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43805.2	3.6e-23	80.43	hypothetical protein Csa_017194, partial [Cucumis sativus]	[more]
XP_023554722.1	9.5e-16	70.00	uncharacterized protein LOC111811901 [Cucurbita pepo subsp. pepo]	[more]
KAG6571852.1	8.0e-15	68.89	hypothetical protein SDJN03_28580, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022952911.1	1.4e-14	68.89	STE20/SPS1-related proline-alanine-rich protein kinase-like [Cucurbita moschata]	[more]

BLAST of Spg004064 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg004064 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K427	1.7e-23	80.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064050 PE=4 SV=1	[more]
A0A6J1GLJ6	6.6e-15	68.89	STE20/SPS1-related proline-alanine-rich protein kinase-like OS=Cucurbita moschat...	[more]

BLAST of Spg004064 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg004064.1	Spg004064.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding