Spg001745 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001745
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon protein
Location	scaffold10: 2599577 .. 2601987 (+)
RNA-Seq Expression	Spg001745
Synteny	Spg001745

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGGGAAGCCGAAATTCTATGTCGTGTTTGTTGGGCGTAACCTAGGAATTTACACTTCCTGGGTTGAATGCCACAAACAAGTAAACCAGTTTAGGGGAGCAGTACACAAGTCGTATGCAACATGTGCAGAAGCAGAGTATGCATTTAGGCATTTCGTAATGGGGACCAGTGGTCGAGCGAACCTCATGGATGAACATGAAGCGTGTCGTAACCGACCCGTAAGGGCAAATGGTCAAAATGTGGGAAAATGTTATTGTCTGAGTAGGATGTTCGTAGGGTTCGTAATTGGAATTATTGTAACGTACATCGTCCTATATTATCTTTAGTACATTAGGGTATACCCATGTAATCATGGGTGATTCTGTAATAGTAAATAAAAGATGGTTTATATGTCGTCTAGGAACAAGTGCATTGCAAATGGATTTCGTAACACCACACGAGCTTGTTTCCATACTGTCCATAATGGCTGACTCCCAACGACAATTATTCAACCTCATTAGCTTCTTCATGACCGACCGTCCTAGGATAGAAAACCAAACTCCCTACATCAGACACCAGATAAGGCAATTAGCCTGCTTCCGGTTGATCCATGAAAGTGACCTATGTTGTCGGGAGAGCACGAGGATGGATAGGAGATGTTTTGCCATCCTATGCAGTATGCTTAGGACGAATTTCGGTTTGGTAGGGACGAAAATCGTAGACGTTGAAGAGATGGTTGCGATGTTCTTACACATCCTTGCTCACGATGTTAAGAATAGAGTCATAAGAAGACAGTTTGCACGGTCAGGAGAGACAGTTTCTCGGCACTTCAACGCAACTCTAAGCGTCGTACTACGGTTGTACGAAGTTCTGCTTAAGAAACCGGTACCGATCACGGGTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTATGGATACTCAATGTTAACACACATCGTGAAGATGTTACAATCTCTTCCTCAGACTTGTAATGCGATGTCAAAACAGAATTGTTTAGGTGCATTGGACGGTACGTACATAAAGGTCAATGTCAGTGTCGCTGATTGACCCCGTTATAGGACGCGAAAGGGTGACATTGCTACAAATGTGTTGGGCGTTGTCTCACCGAACGGTGAATTCATTTTCGTCATGCCGGGATGGGAAGGTTCGGCTGCTGATTCGCGGGTACTGAGGGATGCAATATCACGCCCAAATGGACTAGGTGTACCGAAGGGTATGAAACCCTCTCACAGACTAAAATTTGGAATACTTACGTCAACCTTCAGTACTTACCTCATTTTATGAACAGGATATTACTACCTTTGTGATGTCGGATATCCGAATGCAGAGGGTTTCTTGGCACCTTACAGAGGAGAGTGGTACCACTTATCTGAGTGGAGAGGGGGAGGTAATGCACCGACTACACCACGAGAGTTCTTCAACATGAAACATTCCTCTGCCCGAAATGTCATTGAGAGAGCCTTCGGTGCTCTGAAAGGACGGTGGGTGATACTTCGTGGGAGGTCATACTACCCTGTTCGGACTCAGTGTCGGATCATAACGGCATGCTACTTACTCCACAACCTCATCACCCGGGAGATGGGTCTAGACATAGGGTTGGAAGAGGGGGATATTGGTGGGTCGGAACACGTTCCTCTTGATGGGGAAAACATTACTATCATTCAAGGATCCCCTGAATGGACTCATAAGCGAGATGACCTGGCGAACAGAATGTTCAATGCGTGGGGGCAATCTCAATGACCCTTTTTTACCTAAGACTTTTTCCTCTTTCGTACTTGAACCAGATGTGGGTTGTTCGAACAGTGAGTTTATTTTTATTTTTATTTTTTTAAATCTGAACCACCTAGTTCGTGTTACTGTACCATGACTATCGAATATTATTAATTCCTGTTATTATTATTACTCTTCTTAACTAACTTGCAAACTCGAATTACATGCTAAATACCTCTTCTCCATTGTCCAACCAAAGCATTACACCCTTGTATGAATTTATAAAAAGACTTACGAACTCTAGTCACGCACTACTATATGCATGTAGGATAATGGCAGGAGCAGACAAACAACCAAAACATATATGGACGAGGGTGGAGGAGGCAAAATTGGTTGAAAGCCTCGTGGAGCTTGTACATGAAGGTGGGTGGCGAGGTGATAATGGAACGTTCAGACCCGGCTACTGATAACTGCCCAAAAGGTAGTTATTTAGGCCTCATTTCTATATTGATTTGTGTGTCTTTTGTGCTTAATAGGGTTGGTTTTAGATATATATTACATGTTTTAACCCATTTGGAAGAATGGAAGCTTTGGAAATCATTTTGTGCAGAATCTGTTGCTGGGCGACTTGAGGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAGAACTGCCACGTCACAGCTCGTTAG

mRNA sequence

ATGATGGGGAAGCCGAAATTCTATGTCGTGTTTGTTGGGCGTAACCTAGGAATTTACACTTCCTGGGTTGAATGCCACAAACAAGTAAACCAGTTTAGGGGAGCAGTACACAAGTCGTATGCAACATGTGCAGAAGCAGAGTATGCATTTAGGCATTTCGTAATGGGGACCAGTGGTCGAGCGAACCTCATGGATGAACATGAAGCGTGTCGTAACCGACCCGTAAGGGCAAATGGTCAAAATGTGGGAAAATGTTATTGTCTGAGTAGGATGTTCGTAGGTATGCTTAGGACGAATTTCGGTTTGGTAGGGACGAAAATCGTAGACGTTGAAGAGATGGTTGCGATGTTCTTACACATCCTTGCTCACGATGTTAAGAATAGAGTCATAAGAAGACAGTTTGCACGGTCAGGAGAGACAGTTTCTCGGCACTTCAACGCAACTCTAAGCGTCGTACTACGGTTGTACGAAGTTCTGCTTAAGAAACCGGTACCGATCACGGGTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTGGGTGGCGAGGTGATAATGGAACGTTCAGACCCGGCTACTGATAACTGCCCAAAAGAATCTGTTGCTGGGCGACTTGAGGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAGAACTGCCACGTCACAGCTCGTTAG

Coding sequence (CDS)

ATGATGGGGAAGCCGAAATTCTATGTCGTGTTTGTTGGGCGTAACCTAGGAATTTACACTTCCTGGGTTGAATGCCACAAACAAGTAAACCAGTTTAGGGGAGCAGTACACAAGTCGTATGCAACATGTGCAGAAGCAGAGTATGCATTTAGGCATTTCGTAATGGGGACCAGTGGTCGAGCGAACCTCATGGATGAACATGAAGCGTGTCGTAACCGACCCGTAAGGGCAAATGGTCAAAATGTGGGAAAATGTTATTGTCTGAGTAGGATGTTCGTAGGTATGCTTAGGACGAATTTCGGTTTGGTAGGGACGAAAATCGTAGACGTTGAAGAGATGGTTGCGATGTTCTTACACATCCTTGCTCACGATGTTAAGAATAGAGTCATAAGAAGACAGTTTGCACGGTCAGGAGAGACAGTTTCTCGGCACTTCAACGCAACTCTAAGCGTCGTACTACGGTTGTACGAAGTTCTGCTTAAGAAACCGGTACCGATCACGGGTTCTTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTGGGTGGCGAGGTGATAATGGAACGTTCAGACCCGGCTACTGATAACTGCCCAAAAGAATCTGTTGCTGGGCGACTTGAGGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAGAACTGCCACGTCACAGCTCGTTAG

Protein sequence

MMGKPKFYVVFVGRNLGIYTSWVECHKQVNQFRGAVHKSYATCAEAEYAFRHFVMGTSGRANLMDEHEACRNRPVRANGQNVGKCYCLSRMFVGMLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLRLYEVLLKKPVPITGSCQDGRWKWFEVGGEVIMERSDPATDNCPKESVAGRLEGANSVLQQNWEQNCHVTAR

Homology

[Close]

BLAST of Spg001745 vs. NCBI nr
Match: XP_008441953.1 (PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 8.3e-29
Identity = 62/85 (72.94%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 95  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 154
           +LRT+ GLVGT+++DVEEMVAMFLHILAHDVKNR+I+++FARSGETVSRHFN  L  +LR
Sbjct: 12  LLRTSAGLVGTEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSRHFNIVLLAILR 71

Query: 155 LYEVLLKKPVPITGSCQDGRWKWFE 180
           L++ LLKKP P+T SC D RWKWFE
Sbjct: 72  LHDELLKKPQPVTNSCTDPRWKWFE 96

[Close]

BLAST of Spg001745 vs. NCBI nr
Match: TYK08389.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 8.3e-29
Identity = 62/85 (72.94%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 95  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 154
           +LRT+ GLVGT+++DVEEMVAMFLHILAHDVKNR+I+++FARSGETVSRHFN  L  +LR
Sbjct: 12  LLRTSAGLVGTEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSRHFNIVLLAILR 71

Query: 155 LYEVLLKKPVPITGSCQDGRWKWFE 180
           L++ LLKKP P+T SC D RWKWFE
Sbjct: 72  LHDELLKKPQPVTNSCTDPRWKWFE 96

[Close]

BLAST of Spg001745 vs. NCBI nr
Match: KAA0056315.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 2.7e-27
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 95  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 154
           +LR   GL  T+IVDVEEMVAMFLH+LAHDVKNRVI+R+F RSGETVSRHFN  L  VLR
Sbjct: 51  LLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLR 110

Query: 155 LYEVLLKKPVPITGSCQDGRWKWFEVG 182
           LYE L+K+PVP+T +C D RWK FEVG
Sbjct: 111 LYEELIKRPVPVTSNCNDQRWKCFEVG 137

[Close]

BLAST of Spg001745 vs. NCBI nr
Match: KAA0054337.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12374.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 3.5e-27
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 95  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 154
           +LR   GL  T+IVDVEEMVAMFLH+LAHDVKNRVI+R+F RSGETVSRHFN  L  VLR
Sbjct: 12  LLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIILLAVLR 71

Query: 155 LYEVLLKKPVPITGSCQDGRWKWFEVG 182
           LYE L+K+PVP+T +C D RWK FEVG
Sbjct: 72  LYEELIKRPVPVTSNCNDQRWKCFEVG 98

[Close]

BLAST of Spg001745 vs. NCBI nr
Match: KAA0035913.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-26
Identity = 62/85 (72.94%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 95  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 154
           +LR   GL  T+IVDVEEMVAMFLH+LAHDVKNRVI+R+F RSGETVSRHFN  L VVLR
Sbjct: 51  LLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLVVLR 110

Query: 155 LYEVLLKKPVPITGSCQDGRWKWFE 180
           LYE L+K+PVP+T +C D RWK FE
Sbjct: 111 LYEELIKRPVPVTSNCNDQRWKCFE 135

[Close]

BLAST of Spg001745 vs. ExPASy Swiss-Prot
Match: Q9KEI9 (Ribonuclease H OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=rnhA PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-07
Identity = 28/50 (56.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 2  MGKPKFYVVFVGRNLGIYTSWVECHKQVNQFRGAVHKSYATCAEAEYAFR 52
          M K K+YVV+ GR  GIYTSW  C  QV  + GA  KSY +  EAE AFR
Sbjct: 1  MAKSKYYVVWNGRKPGIYTSWSACEAQVKGYTGAKFKSYPSKEEAEAAFR 50

[Close]

BLAST of Spg001745 vs. ExPASy Swiss-Prot
Match: Q07762 (Ribonuclease H OS=Crithidia fasciculata OX=5656 GN=RNH1 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-07
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 4   KPKFYVVFVGRNLGIYTSWVECHKQVNQFRGAVHKSYATCAEA 47
           KP FYVV VGR  GIY++W +C +QV  F GAV+KS+ T +EA
Sbjct: 153 KPSFYVVAVGRQRGIYSTWDQCSEQVKGFSGAVYKSFRTLSEA 195

[Close]

BLAST of Spg001745 vs. ExPASy TrEMBL
Match: A0A5D3CDG6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002070 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.0e-29
Identity = 62/85 (72.94%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 95  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 154
           +LRT+ GLVGT+++DVEEMVAMFLHILAHDVKNR+I+++FARSGETVSRHFN  L  +LR
Sbjct: 12  LLRTSAGLVGTEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSRHFNIVLLAILR 71

Query: 155 LYEVLLKKPVPITGSCQDGRWKWFE 180
           L++ LLKKP P+T SC D RWKWFE
Sbjct: 72  LHDELLKKPQPVTNSCTDPRWKWFE 96

[Close]

BLAST of Spg001745 vs. ExPASy TrEMBL
Match: A0A5A7U0J9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G002560 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.0e-29
Identity = 62/85 (72.94%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 95  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 154
           +LRT+ GLVGT+++DVEEMVAMFLHILAHDVKNR+I+++FARSGETVSRHFN  L  +LR
Sbjct: 12  LLRTSAGLVGTEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSRHFNIVLLAILR 71

Query: 155 LYEVLLKKPVPITGSCQDGRWKWFE 180
           L++ LLKKP P+T SC D RWKWFE
Sbjct: 72  LHDELLKKPQPVTNSCTDPRWKWFE 96

[Close]

BLAST of Spg001745 vs. ExPASy TrEMBL
Match: A0A1S3B4J8 (uncharacterized protein LOC103485952 OS=Cucumis melo OX=3656 GN=LOC103485952 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.0e-29
Identity = 62/85 (72.94%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 95  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 154
           +LRT+ GLVGT+++DVEEMVAMFLHILAHDVKNR+I+++FARSGETVSRHFN  L  +LR
Sbjct: 12  LLRTSAGLVGTEVIDVEEMVAMFLHILAHDVKNRMIQKEFARSGETVSRHFNIVLLAILR 71

Query: 155 LYEVLLKKPVPITGSCQDGRWKWFE 180
           L++ LLKKP P+T SC D RWKWFE
Sbjct: 72  LHDELLKKPQPVTNSCTDPRWKWFE 96

[Close]

BLAST of Spg001745 vs. ExPASy TrEMBL
Match: A0A5A7URS0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4213G00010 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-27
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 95  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 154
           +LR   GL  T+IVDVEEMVAMFLH+LAHDVKNRVI+R+F RSGETVSRHFN  L  VLR
Sbjct: 51  LLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLR 110

Query: 155 LYEVLLKKPVPITGSCQDGRWKWFEVG 182
           LYE L+K+PVP+T +C D RWK FEVG
Sbjct: 111 LYEELIKRPVPVTSNCNDQRWKCFEVG 137

[Close]

BLAST of Spg001745 vs. ExPASy TrEMBL
Match: A0A5A7UID8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001540 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-27
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 95  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 154
           +LR   GL  T+IVDVEEMVAMFLH+LAHDVKNRVI+R+F RSGETVSRHFN  L  VLR
Sbjct: 12  LLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIILLAVLR 71

Query: 155 LYEVLLKKPVPITGSCQDGRWKWFEVG 182
           LYE L+K+PVP+T +C D RWK FEVG
Sbjct: 72  LYEELIKRPVPVTSNCNDQRWKCFEVG 98

[Close]

BLAST of Spg001745 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06
Identity = 23/61 (37.70%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 95  MLRTNFGLVGTKIVDVEEMVAMFLHILAHDVKNRVIRRQFARSGETVSRHFNATLSVVLR 154
           +L+T   L  T  + +E  +A+FL I+ H+++ R ++  F  SGET+SRHFN  L+ V+ 
Sbjct: 59  LLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIA 118

Query: 155 L 156
           +
Sbjct: 119 I 119

The following BLAST results are available for this feature:

BLAST of Spg001745 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441953.1	8.3e-29	72.94	PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo] >KAA0047737.1 put...	[more]
TYK08389.1	8.3e-29	72.94	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0056315.1	2.7e-27	72.41	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054337.1	3.5e-27	72.41	retrotransposon protein [Cucumis melo var. makuwa] >TYK12374.1 retrotransposon p...	[more]
KAA0035913.1	1.3e-26	72.94	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg001745 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9KEI9	2.4e-07	56.00	Ribonuclease H OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 73...	[more]
Q07762	2.4e-07	58.14	Ribonuclease H OS=Crithidia fasciculata OX=5656 GN=RNH1 PE=3 SV=1	[more]

BLAST of Spg001745 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CDG6	4.0e-29	72.94	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7U0J9	4.0e-29	72.94	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A1S3B4J8	4.0e-29	72.94	uncharacterized protein LOC103485952 OS=Cucumis melo OX=3656 GN=LOC103485952 PE=...	[more]
A0A5A7URS0	1.3e-27	72.41	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UID8	1.7e-27	72.41	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg001745 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41980.1	1.2e-06	37.70	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037056	Ribonuclease H1, N-terminal domain superfamily	GENE3D	3.40.970.10		coord: 3..52 e-value: 1.3E-16 score: 62.5
IPR011320	Ribonuclease H1, N-terminal	PFAM	PF01693	Cauli_VI	coord: 6..47 e-value: 7.1E-16 score: 58.2
None	No IPR available	PANTHER	PTHR22930:SF216	OS11G0577650 PROTEIN	coord: 94..179
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 94..179
IPR009027	Ribosomal protein L9/RNase H1, N-terminal	SUPERFAMILY	55658	L9 N-domain-like	coord: 6..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001745.1	Spg001745.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding