Spg001715 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001715
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein FAR1-RELATED SEQUENCE 4-like
Location	scaffold10: 1731239 .. 1732365 (+)
RNA-Seq Expression	Spg001715
Synteny	Spg001715

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTGTTCGATGGTGTTTGGGACGTGGCAAGACTCTACAGTGGTTTTAAGTCTGGTGTTGTGACGTGTCCTTGTGATGCTAACCTTTCTCAACTCAAGGTATGTGCTGCGAACTACCTCAATTTGGCTGACAGTAATAGTATCTGTCGGTTGACACTCTTTAGGAACTGGTCAAGCAACCCGATAATATATAGTCCTTTCAGAAGATAGAGATGTTTTTTGGATAGTAAACGGGTTTCAGAATGGCACATACAAGGATTGCTTTGCAGGGGGTAGATACTACTATACACAACGGGGGGCAGTCGCAAGCTCATCTCCGGGGGAGACAAATTTTGAGTTTGTTAACTTAGATGGGATTGATGCGTTGACCGCATAGTACCTGTATTGGAGGAGTGCGTATTTTCGTGCAAAAAAATCTTAAGAAGGTAGTCTCTTTACTGGCTCTTAAAGGGAGTTTCCAATTCAAGACAATTAAATCCAATAGCACACAGTATACAGTGGCATGCATAGACGACTCATGCCCATGGTATATACACGCTTCTACCTATCGCACAGGGCAGTTGTGGATTGTGAGGAAGTTTATCAATGAACACACTTGTTCTTTTGATGTCGTTCAAAATGATCACAGGCAAGCGACGACGAGTGTTGCGTGTGAGTATGCGAAGACTATAATGAGGATCACTAACAGGATGCACTGTACACCTTGGGACATAATAGAGTATGCTAGGAAAACGCACAGGATCAATATTAGTTATGACAAAGCATGGAAGGGTAGAGAAAAGACGTTAAATGAGTTGAGAGGATCTCCTGAAGTCTTATGCGCAAATTCCAGCGTTTGCAGATAGGTTGATCGAAAGAAATCCAGGTATATACCATTTGTATTAACAGTTTATAACATTTCGTATTTAGTATATAATAATATTTACTATCAACATTTTTCAGGTACGTATACCGCCCAGGAAATTGATTCAAATGACAGGTTCAAATTCTTTTTCATGAGTATTGCAACATCCATAGACGAGTGGAAACACTGTCTCCCAGTTATTTCTGTAGATGGTACATCTTTGAAGAATAAATTCAGTGGCACCCTTTTGACGGCCTGCACATTTGAGGTGAGATTTTAA

mRNA sequence

ATGATTTTGTTCGATGGTGTTTGGGACGTGGCAAGACTCTACAGTGGTTTTAAGTCTGGTGTTGTGACGTGTCCTTGTGATGCTAACCTTTCTCAACTCAAGGTATGTGCTGCGAACTACCTCAATTTGGCTGACAGTAATAGTATCTGTCGGTTGACACTCTTTAGGAACTGGCAAGCGACGACGAGTGTTGCGTATAGGTTGATCGAAAGAAATCCAGGTACGTATACCGCCCAGGAAATTGATTCAAATGACAGGTTCAAATTCTTTTTCATGAGTATTGCAACATCCATAGACGAGTGGAAACACTGTCTCCCAGTTATTTCTGTAGATGGTACATCTTTGAAGAATAAATTCAGTGGCACCCTTTTGACGGCCTGCACATTTGAGGTGAGATTTTAA

Coding sequence (CDS)

ATGATTTTGTTCGATGGTGTTTGGGACGTGGCAAGACTCTACAGTGGTTTTAAGTCTGGTGTTGTGACGTGTCCTTGTGATGCTAACCTTTCTCAACTCAAGGTATGTGCTGCGAACTACCTCAATTTGGCTGACAGTAATAGTATCTGTCGGTTGACACTCTTTAGGAACTGGCAAGCGACGACGAGTGTTGCGTATAGGTTGATCGAAAGAAATCCAGGTACGTATACCGCCCAGGAAATTGATTCAAATGACAGGTTCAAATTCTTTTTCATGAGTATTGCAACATCCATAGACGAGTGGAAACACTGTCTCCCAGTTATTTCTGTAGATGGTACATCTTTGAAGAATAAATTCAGTGGCACCCTTTTGACGGCCTGCACATTTGAGGTGAGATTTTAA

Protein sequence

MILFDGVWDVARLYSGFKSGVVTCPCDANLSQLKVCAANYLNLADSNSICRLTLFRNWQATTSVAYRLIERNPGTYTAQEIDSNDRFKFFFMSIATSIDEWKHCLPVISVDGTSLKNKFSGTLLTACTFEVRF

Homology

[Close]

BLAST of Spg001715 vs. NCBI nr
Match: XP_016901440.1 (PREDICTED: uncharacterized protein LOC107991253 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-16
Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 68  LIERNPGTYTAQEIDSNDRFKFFFMSIATSIDEWKHCLPVISVDGTSLKNKFSGTLLTAC 127
           LI  NPGTYTA+E D   RFKF+FM++ATSID W +C+PVISVDG ++KNK+ GTL++AC
Sbjct: 217 LIRNNPGTYTAKEADDEGRFKFYFMALATSIDAWNYCVPVISVDGATMKNKYLGTLISAC 276

Query: 128 TFE 131
           T +
Sbjct: 277 TID 279

[Close]

BLAST of Spg001715 vs. NCBI nr
Match: TYK29863.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 6.2e-16
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 68  LIERNPGTYTAQEIDSNDRFKFFFMSIATSIDEWKHCLPVISVDGTSLKNKFSGTLLTAC 127
           LI  NPGTYTA+E D   RFKF+FM++A SID W +C+PVISVDG ++KNK+ GTL++AC
Sbjct: 217 LIRNNPGTYTAEEADDEGRFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISAC 276

Query: 128 TFE 131
           T +
Sbjct: 277 TID 279

[Close]

BLAST of Spg001715 vs. NCBI nr
Match: KAA0040870.1 (uncharacterized protein E6C27_scaffold345G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 6.2e-16
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 68  LIERNPGTYTAQEIDSNDRFKFFFMSIATSIDEWKHCLPVISVDGTSLKNKFSGTLLTAC 127
           LI  NPGTYTA+E D   RFKF+FM++A SID W +C+PVISVDG ++KNK+ GTL++AC
Sbjct: 142 LIRNNPGTYTAEEADDEGRFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISAC 201

Query: 128 TFE 131
           T +
Sbjct: 202 TID 204

[Close]

BLAST of Spg001715 vs. NCBI nr
Match: TYK09853.1 (uncharacterized protein E5676_scaffold39G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 6.2e-16
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 68  LIERNPGTYTAQEIDSNDRFKFFFMSIATSIDEWKHCLPVISVDGTSLKNKFSGTLLTAC 127
           LI  NPGTYTA+E D   RFKF+FM++A SID W +C+PVISVDG ++KNK+ GTL++AC
Sbjct: 43  LIRNNPGTYTAEEADDEGRFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISAC 102

Query: 128 TFE 131
           T +
Sbjct: 103 TID 105

[Close]

BLAST of Spg001715 vs. NCBI nr
Match: XP_016902696.1 (PREDICTED: uncharacterized protein LOC107991824 [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 8.1e-16
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 68  LIERNPGTYTAQEIDSNDRFKFFFMSIATSIDEWKHCLPVISVDGTSLKNKFSGTLLTAC 127
           LI  NPGTYTA+E D   RFKF+FM++A SID W +C+PVISVDG ++KNK+ GTL++AC
Sbjct: 58  LIRNNPGTYTAEEADDEGRFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISAC 117

Query: 128 TFE 131
           T +
Sbjct: 118 TVD 120

[Close]

BLAST of Spg001715 vs. ExPASy TrEMBL
Match: A0A1S4E0D5 (uncharacterized protein LOC107991253 OS=Cucumis melo OX=3656 GN=LOC107991253 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 68  LIERNPGTYTAQEIDSNDRFKFFFMSIATSIDEWKHCLPVISVDGTSLKNKFSGTLLTAC 127
           LI  NPGTYTA+E D   RFKF+FM++ATSID W +C+PVISVDG ++KNK+ GTL++AC
Sbjct: 217 LIRNNPGTYTAKEADDEGRFKFYFMALATSIDAWNYCVPVISVDGATMKNKYLGTLISAC 276

Query: 128 TFE 131
           T +
Sbjct: 277 TID 279

[Close]

BLAST of Spg001715 vs. ExPASy TrEMBL
Match: A0A5D3CDB8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00210 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.0e-16
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 68  LIERNPGTYTAQEIDSNDRFKFFFMSIATSIDEWKHCLPVISVDGTSLKNKFSGTLLTAC 127
           LI  NPGTYTA+E D   RFKF+FM++A SID W +C+PVISVDG ++KNK+ GTL++AC
Sbjct: 43  LIRNNPGTYTAEEADDEGRFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISAC 102

Query: 128 TFE 131
           T +
Sbjct: 103 TID 105

[Close]

BLAST of Spg001715 vs. ExPASy TrEMBL
Match: A0A5D3E198 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001100 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.0e-16
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 68  LIERNPGTYTAQEIDSNDRFKFFFMSIATSIDEWKHCLPVISVDGTSLKNKFSGTLLTAC 127
           LI  NPGTYTA+E D   RFKF+FM++A SID W +C+PVISVDG ++KNK+ GTL++AC
Sbjct: 217 LIRNNPGTYTAEEADDEGRFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISAC 276

Query: 128 TFE 131
           T +
Sbjct: 277 TID 279

[Close]

BLAST of Spg001715 vs. ExPASy TrEMBL
Match: A0A5A7TC03 (ZnF_PMZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00200 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.0e-16
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 68  LIERNPGTYTAQEIDSNDRFKFFFMSIATSIDEWKHCLPVISVDGTSLKNKFSGTLLTAC 127
           LI  NPGTYTA+E D   RFKF+FM++A SID W +C+PVISVDG ++KNK+ GTL++AC
Sbjct: 142 LIRNNPGTYTAEEADDEGRFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISAC 201

Query: 128 TFE 131
           T +
Sbjct: 202 TID 204

[Close]

BLAST of Spg001715 vs. ExPASy TrEMBL
Match: A0A1S4E392 (uncharacterized protein LOC107991824 OS=Cucumis melo OX=3656 GN=LOC107991824 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.9e-16
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 68  LIERNPGTYTAQEIDSNDRFKFFFMSIATSIDEWKHCLPVISVDGTSLKNKFSGTLLTAC 127
           LI  NPGTYTA+E D   RFKF+FM++A SID W +C+PVISVDG ++KNK+ GTL++AC
Sbjct: 58  LIRNNPGTYTAEEADDEGRFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISAC 117

Query: 128 TFE 131
           T +
Sbjct: 118 TVD 120

The following BLAST results are available for this feature:

BLAST of Spg001715 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901440.1	2.1e-16	63.49	PREDICTED: uncharacterized protein LOC107991253 [Cucumis melo]	[more]
TYK29863.1	6.2e-16	61.90	MuDRA-like transposase [Cucumis melo var. makuwa]	[more]
KAA0040870.1	6.2e-16	61.90	uncharacterized protein E6C27_scaffold345G00200 [Cucumis melo var. makuwa]	[more]
TYK09853.1	6.2e-16	61.90	uncharacterized protein E5676_scaffold39G00210 [Cucumis melo var. makuwa]	[more]
XP_016902696.1	8.1e-16	61.90	PREDICTED: uncharacterized protein LOC107991824 [Cucumis melo]	[more]

BLAST of Spg001715 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg001715 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E0D5	1.0e-16	63.49	uncharacterized protein LOC107991253 OS=Cucumis melo OX=3656 GN=LOC107991253 PE=...	[more]
A0A5D3CDB8	3.0e-16	61.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E198	3.0e-16	61.90	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A5A7TC03	3.0e-16	61.90	ZnF_PMZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S4E392	3.9e-16	61.90	uncharacterized protein LOC107991824 OS=Cucumis melo OX=3656 GN=LOC107991824 PE=...	[more]

BLAST of Spg001715 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001715.1	Spg001715.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006313	transposition, DNA-mediated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004803	transposase activity
molecular_function	GO:0008270	zinc ion binding