Spg001248 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001248
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Glycosyltransferase
Location	scaffold8: 47317366 .. 47317844 (+)
RNA-Seq Expression	Spg001248
Synteny	Spg001248

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAGAGAGGAATTGAATCTGTGAGTTTGTGTGTGAGTTCTTTGATTGATCACTTCGAATTGCATGTGAAGGAAACTAGTGGAATTCACGTGTGTGGTGAGTGTTGCAAATACGTGGTGTTATAACAGTTTCATTTCAAAACTAATTGATAATGAGTGGAATAACTGAGGTTTGTCATAAACGGTGATATCTCCACTTATGTTTTGGGAGATCTTAACCTTCATTCAATTAAAGTTTCTATAAAACTACCTCATTTGACGACGACTATGGTCTGTGGACCAAAATTTCTCAACATGTCTCAAAATTTCTCACTTGACGATTGTGTTCTGTCTCATCAGATCTTGCTATCAAGCTTTCTGATACAACAATGGCGGATGGAAAAGACAACGTTGTGCTATTCCCCTTCACGAGACAGGGTCATATCATTCCATTTCTAGCTTTAGCGCTTCAGATTGAACAATTTGAACTTAACCCTTGA

mRNA sequence

AGAAAGAGAGGAATTGAATCTGTGAGTTTGTGTGTGAGTTCTTTGATTGATCACTTCGAATTGCATGTGAAGGAAACTAGTGGAATTCACGTGTGTGATCTTGCTATCAAGCTTTCTGATACAACAATGGCGGATGGAAAAGACAACGTTGTGCTATTCCCCTTCACGAGACAGGGTCATATCATTCCATTTCTAGCTTTAGCGCTTCAGATTGAACAATTTGAACTTAACCCTTGA

Coding sequence (CDS)

AGAAAGAGAGGAATTGAATCTGTGAGTTTGTGTGTGAGTTCTTTGATTGATCACTTCGAATTGCATGTGAAGGAAACTAGTGGAATTCACGTGTGTGATCTTGCTATCAAGCTTTCTGATACAACAATGGCGGATGGAAAAGACAACGTTGTGCTATTCCCCTTCACGAGACAGGGTCATATCATTCCATTTCTAGCTTTAGCGCTTCAGATTGAACAATTTGAACTTAACCCTTGA

Protein sequence

RKRGIESVSLCVSSLIDHFELHVKETSGIHVCDLAIKLSDTTMADGKDNVVLFPFTRQGHIIPFLALALQIEQFELNP

Homology

[Close]

BLAST of Spg001248 vs. NCBI nr
Match: XP_022995076.1 (UDP-glycosyltransferase 92A1 [Cucurbita maxima])

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-04
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 43 MADGKDNVVLFPFTRQGHIIPFLALALQIEQ 74
          M DGK++VVLFPF  QGHIIPFLALAL IEQ
Sbjct: 1  MGDGKESVVLFPFMGQGHIIPFLALALHIEQ 31

[Close]

BLAST of Spg001248 vs. NCBI nr
Match: XP_035545850.1 (UDP-glycosyltransferase 92A1-like [Juglans regia])

HSP 1 Score: 54.3 bits (129), Expect = 5.5e-04
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 43 MADGKDNVVLFPFTRQGHIIPFLALALQIEQ 74
          MA  KDN+VLFPF  QGHIIPFLALAL IEQ
Sbjct: 1  MAQRKDNIVLFPFMMQGHIIPFLALALHIEQ 31

[Close]

BLAST of Spg001248 vs. NCBI nr
Match: KAF5471258.1 (hypothetical protein F2P56_011704 [Juglans regia])

HSP 1 Score: 54.3 bits (129), Expect = 5.5e-04
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 43 MADGKDNVVLFPFTRQGHIIPFLALALQIEQ 74
          MA  KDN+VLFPF  QGHIIPFLALAL IEQ
Sbjct: 1  MAQRKDNIVLFPFMMQGHIIPFLALALHIEQ 31

[Close]

BLAST of Spg001248 vs. NCBI nr
Match: KAG7035838.1 (UDP-glycosyltransferase 92A1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 53.9 bits (128), Expect = 7.1e-04
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 43 MADGKDNVVLFPFTRQGHIIPFLALALQIEQ 74
          M DGK +VVLFPF  QGHIIPFLALAL IEQ
Sbjct: 1  MGDGKQSVVLFPFMGQGHIIPFLALALHIEQ 31

[Close]

BLAST of Spg001248 vs. NCBI nr
Match: XP_022958159.1 (UDP-glycosyltransferase 92A1 [Cucurbita moschata])

HSP 1 Score: 53.9 bits (128), Expect = 7.1e-04
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 43 MADGKDNVVLFPFTRQGHIIPFLALALQIEQ 74
          M DGK +VVLFPF  QGHIIPFLALAL IEQ
Sbjct: 1  MGDGKQSVVLFPFMGQGHIIPFLALALHIEQ 31

[Close]

BLAST of Spg001248 vs. ExPASy TrEMBL
Match: A0A6J1K107 (Glycosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111490730 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 43 MADGKDNVVLFPFTRQGHIIPFLALALQIEQ 74
          M DGK++VVLFPF  QGHIIPFLALAL IEQ
Sbjct: 1  MGDGKESVVLFPFMGQGHIIPFLALALHIEQ 31

[Close]

BLAST of Spg001248 vs. ExPASy TrEMBL
Match: A0A5B7A8S0 (Putative UDP-glycosyltransferase 92A1-like (Fragment) OS=Davidia involucrata OX=16924 GN=Din_022683 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.0e-04
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 43 MADGKDNVVLFPFTRQGHIIPFLALALQIEQ 74
          MA+ K+N+V+FPF  QGHIIPFLALALQIEQ
Sbjct: 24 MAERKENIVIFPFMAQGHIIPFLALALQIEQ 54

[Close]

BLAST of Spg001248 vs. ExPASy TrEMBL
Match: A0A6P9EC77 (UDP-glycosyltransferase 92A1-like OS=Juglans regia OX=51240 GN=LOC118348397 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.6e-04
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 43 MADGKDNVVLFPFTRQGHIIPFLALALQIEQ 74
          MA  KDN+VLFPF  QGHIIPFLALAL IEQ
Sbjct: 1  MAQRKDNIVLFPFMMQGHIIPFLALALHIEQ 31

[Close]

BLAST of Spg001248 vs. ExPASy TrEMBL
Match: A0A6J1H4A3 (Glycosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111459469 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 43 MADGKDNVVLFPFTRQGHIIPFLALALQIEQ 74
          M DGK +VVLFPF  QGHIIPFLALAL IEQ
Sbjct: 1  MGDGKQSVVLFPFMGQGHIIPFLALALHIEQ 31

[Close]

BLAST of Spg001248 vs. ExPASy TrEMBL
Match: A0A5A7TH54 (Glycosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00320 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.5e-04
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 43 MADGKDNVVLFPFTRQGHIIPFLALALQIEQFELN 78
          M D K ++VLFPF  QGHIIPFLALALQIEQ   N
Sbjct: 1  MEDEKQSIVLFPFMGQGHIIPFLALALQIEQVNTN 35

[Close]

BLAST of Spg001248 vs. TAIR 10
Match: AT5G12890.1 (UDP-Glycosyltransferase superfamily protein )

HSP 1 Score: 41.2 bits (95), Expect = 4.5e-04
Identity = 19/34 (55.88%), Postives = 26/34 (76.47%), Query Frame = 0


Query: 43 MADGKD---NVVLFPFTRQGHIIPFLALALQIEQ 74
          MA+ K     +V+FPF  QGHIIPF+ALAL++E+
Sbjct: 1  MAEAKPRNLRIVMFPFMGQGHIIPFVALALRLEK 34

The following BLAST results are available for this feature:

BLAST of Spg001248 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022995076.1	4.2e-04	80.65	UDP-glycosyltransferase 92A1 [Cucurbita maxima]	[more]
XP_035545850.1	5.5e-04	80.65	UDP-glycosyltransferase 92A1-like [Juglans regia]	[more]
KAF5471258.1	5.5e-04	80.65	hypothetical protein F2P56_011704 [Juglans regia]	[more]
KAG7035838.1	7.1e-04	80.65	UDP-glycosyltransferase 92A1, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022958159.1	7.1e-04	80.65	UDP-glycosyltransferase 92A1 [Cucurbita moschata]	[more]

BLAST of Spg001248 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg001248 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K107	2.0e-04	80.65	Glycosyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111490730 PE=3 SV=1	[more]
A0A5B7A8S0	2.0e-04	77.42	Putative UDP-glycosyltransferase 92A1-like (Fragment) OS=Davidia involucrata OX=...	[more]
A0A6P9EC77	2.6e-04	80.65	UDP-glycosyltransferase 92A1-like OS=Juglans regia OX=51240 GN=LOC118348397 PE=4...	[more]
A0A6J1H4A3	3.5e-04	80.65	Glycosyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111459469 PE=3 SV=1	[more]
A0A5A7TH54	4.5e-04	71.43	Glycosyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G...	[more]

BLAST of Spg001248 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12890.1	4.5e-04	55.88	UDP-Glycosyltransferase superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001248.1	Spg001248.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008194	UDP-glycosyltransferase activity