Spg001103 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg001103
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Non-specific serine/threonine protein kinase
Location	scaffold8: 36728091 .. 36728970 (+)
RNA-Seq Expression	Spg001103
Synteny	Spg001103

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACGCCCCACAGCTGGATTTTATTTCGTCATATGGACTTCTCAGTCTGCTGCTGTGGGTATGAAATTGACAATTCTTCAGCCAGCTGCTTCTGGGCTGTTGGAATTGAACCTTCTTCAGCAAATAAGTGAACCTCTTTCGAGAATGCTTCCCCAGTTGTTGGGATGTTTATCTATAGTTGGACGTAAGTTTGGATCGTTAGAGTGGATCAAGAGTTTGTGGAAGTGCTCGGCTCTTTTGGCAGAAATATCACGTGAACATTTTTCCACCCTTTTTCCGCTTGCGAGTGATATCCTATTCCAAAGTTTGAAAACGACCAGAGCTAACCATGTAGTAAGACGTCAGAAGATTACGTTTCTTCAAGTTCATGGCGTTTAAAAAACTAATCTTCAGTTATTATCCCTTCAAAAACTTGGACTGCTGCCATCATCTGTGCACAGGATATTGAAATTTGATGCACCAATATCTCAGCTTAGACAGCATCCAAATCATTTGGTAACAGGAAAGTTCTGCTGCCACTTATTAACTCTTGCTCCAACATGGGAATAATGAAGTTGAACAAACAGTGACAATTATTGAAGCAATCTTGACAGTCTTTATGCTTGATATCTTGCACGAACTTACTTTGTTACTGACAGAGAAATTAGCATTGCTGAGCAAGTGGATTATCTACTTAAGCAAGCAACTAGTGTAGACAACCTGCGCAACATGTATAAAGGTTGGACTCCATGATGGACTGGAAATTTGAAGACCAAGGAATCTTGGATGCCTATACTGATGGTTAACTGTTCTTCAAGATTTAGACTGGCACCAGTTGCATTCATCAAAGACATGCTGGGATAATGTGAGAAGCTACAATGAATGCTCGAAAAGCTGA

mRNA sequence

ATGGTACGCCCCACAGCTGGATTTTATTTCGTCATATGGACTTCTCAGTCTGCTGCTGTGGGTATGAAATTGACAATTCTTCAGCCAGCTGCTTCTGGGCTGTTGGAATTGAACCTTCTTCAGCAAATAAGTGAACCTCTTTCGAGAATGCTTCCCCAGTTGTTGGGATGTTTATCTATAGTTGGACGTAAGTTTGGATCGTTAGAGTGGATCAAGAGTTTGTGGAAGTGCTCGGCTCTTTTGGCAGAAATATCACGTGAACATTTTTCCACCCTTTTTCCGCTTGCGAAAATTAGCATTGCTGAGCAAGTGGATTATCTACTTAAGCAAGCAACTAGTGTAGACAACCTGCGCAACATGTATAAAGACTGGCACCAGTTGCATTCATCAAAGACATGCTGGGATAATGTGAGAAGCTACAATGAATGCTCGAAAAGCTGA

Coding sequence (CDS)

ATGGTACGCCCCACAGCTGGATTTTATTTCGTCATATGGACTTCTCAGTCTGCTGCTGTGGGTATGAAATTGACAATTCTTCAGCCAGCTGCTTCTGGGCTGTTGGAATTGAACCTTCTTCAGCAAATAAGTGAACCTCTTTCGAGAATGCTTCCCCAGTTGTTGGGATGTTTATCTATAGTTGGACGTAAGTTTGGATCGTTAGAGTGGATCAAGAGTTTGTGGAAGTGCTCGGCTCTTTTGGCAGAAATATCACGTGAACATTTTTCCACCCTTTTTCCGCTTGCGAAAATTAGCATTGCTGAGCAAGTGGATTATCTACTTAAGCAAGCAACTAGTGTAGACAACCTGCGCAACATGTATAAAGACTGGCACCAGTTGCATTCATCAAAGACATGCTGGGATAATGTGAGAAGCTACAATGAATGCTCGAAAAGCTGA

Protein sequence

MVRPTAGFYFVIWTSQSAAVGMKLTILQPAASGLLELNLLQQISEPLSRMLPQLLGCLSIVGRKFGSLEWIKSLWKCSALLAEISREHFSTLFPLAKISIAEQVDYLLKQATSVDNLRNMYKDWHQLHSSKTCWDNVRSYNECSKS

Homology

[Close]

BLAST of Spg001103 vs. NCBI nr
Match: XP_038901831.1 (serine/threonine-protein kinase SMG1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-23
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 25  TILQPAASGLLELNLLQQISEPLSRMLPQLLGCLSIVGRKFGSLEWIKSLWKCSALLAEI 84
           TIL+  ASGLLELNLL+QISEPLSRMLPQLLGCLS+VGRKFG LEWI++LWKC  LLAEI
Sbjct: 290 TILRSTASGLLELNLLEQISEPLSRMLPQLLGCLSMVGRKFGWLEWIENLWKCLTLLAEI 349

Query: 85  SREHFSTLFPLA 97
            REHFST +PLA
Sbjct: 350 LREHFSTFYPLA 361

[Close]

BLAST of Spg001103 vs. NCBI nr
Match: XP_038901832.1 (serine/threonine-protein kinase SMG1-like isoform X3 [Benincasa hispida])

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-23
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 25  TILQPAASGLLELNLLQQISEPLSRMLPQLLGCLSIVGRKFGSLEWIKSLWKCSALLAEI 84
           TIL+  ASGLLELNLL+QISEPLSRMLPQLLGCLS+VGRKFG LEWI++LWKC  LLAEI
Sbjct: 290 TILRSTASGLLELNLLEQISEPLSRMLPQLLGCLSMVGRKFGWLEWIENLWKCLTLLAEI 349

Query: 85  SREHFSTLFPLA 97
            REHFST +PLA
Sbjct: 350 LREHFSTFYPLA 361

[Close]

BLAST of Spg001103 vs. NCBI nr
Match: XP_038901829.1 (serine/threonine-protein kinase SMG1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-23
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 25  TILQPAASGLLELNLLQQISEPLSRMLPQLLGCLSIVGRKFGSLEWIKSLWKCSALLAEI 84
           TIL+  ASGLLELNLL+QISEPLSRMLPQLLGCLS+VGRKFG LEWI++LWKC  LLAEI
Sbjct: 290 TILRSTASGLLELNLLEQISEPLSRMLPQLLGCLSMVGRKFGWLEWIENLWKCLTLLAEI 349

Query: 85  SREHFSTLFPLA 97
            REHFST +PLA
Sbjct: 350 LREHFSTFYPLA 361

[Close]

BLAST of Spg001103 vs. NCBI nr
Match: XP_008459237.1 (PREDICTED: serine/threonine-protein kinase SMG1-like [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-22
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 25  TILQPAASGLLELNLLQQISEPLSRMLPQLLGCLSIVGRKFGSLEWIKSLWKCSALLAEI 84
           TIL+ AASGLLELNLL+QISEPLSRMLPQLLGCLS+VGRKFG LEWI +LWKC  LLAEI
Sbjct: 290 TILRSAASGLLELNLLEQISEPLSRMLPQLLGCLSMVGRKFGWLEWIDNLWKCLTLLAEI 349

Query: 85  SREHFSTLFPLA 97
            RE FST +PLA
Sbjct: 350 LRERFSTYYPLA 361

[Close]

BLAST of Spg001103 vs. NCBI nr
Match: KAA0045985.1 (serine/threonine-protein kinase SMG1-like [Cucumis melo var. makuwa] >TYK13599.1 serine/threonine-protein kinase SMG1-like [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-22
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 25  TILQPAASGLLELNLLQQISEPLSRMLPQLLGCLSIVGRKFGSLEWIKSLWKCSALLAEI 84
           TIL+ AASGLLELNLL+QISEPLSRMLPQLLGCLS+VGRKFG LEWI +LWKC  LLAEI
Sbjct: 290 TILRSAASGLLELNLLEQISEPLSRMLPQLLGCLSMVGRKFGWLEWIDNLWKCLTLLAEI 349

Query: 85  SREHFSTLFPLA 97
            RE FST +PLA
Sbjct: 350 LRERFSTYYPLA 361

[Close]

BLAST of Spg001103 vs. ExPASy TrEMBL
Match: A0A5A7TX52 (Non-specific serine/threonine protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00960 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.2e-23
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 25  TILQPAASGLLELNLLQQISEPLSRMLPQLLGCLSIVGRKFGSLEWIKSLWKCSALLAEI 84
           TIL+ AASGLLELNLL+QISEPLSRMLPQLLGCLS+VGRKFG LEWI +LWKC  LLAEI
Sbjct: 290 TILRSAASGLLELNLLEQISEPLSRMLPQLLGCLSMVGRKFGWLEWIDNLWKCLTLLAEI 349

Query: 85  SREHFSTLFPLA 97
            RE FST +PLA
Sbjct: 350 LRERFSTYYPLA 361

[Close]

BLAST of Spg001103 vs. ExPASy TrEMBL
Match: A0A0A0LLV1 (Non-specific serine/threonine protein kinase OS=Cucumis sativus OX=3659 GN=Csa_2G237710 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.2e-23
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 25  TILQPAASGLLELNLLQQISEPLSRMLPQLLGCLSIVGRKFGSLEWIKSLWKCSALLAEI 84
           TIL+ AASGLLELNLL+QISEPLSRMLPQLLGCLS+VGRKFG LEWI +LWKC  LLAEI
Sbjct: 290 TILRSAASGLLELNLLEQISEPLSRMLPQLLGCLSMVGRKFGWLEWIDNLWKCLTLLAEI 349

Query: 85  SREHFSTLFPLA 97
            RE FST +PLA
Sbjct: 350 LRERFSTYYPLA 361

[Close]

BLAST of Spg001103 vs. ExPASy TrEMBL
Match: A0A0A0LLV1 (Non-specific serine/threonine protein kinase OS=Cucumis sativus OX=3659 GN=Csa_2G237710 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 9.4e-03
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 97   KISIAEQVDYLLKQATSVDNLRNMYKDW 125
            ++SIAEQVDYLLKQATSVDNL NMY+ W
Sbjct: 3771 ELSIAEQVDYLLKQATSVDNLCNMYEGW 3798

HSP 2 Score: 117.1 bits (292), Expect = 6.2e-23
Identity = 59/72 (81.94%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 25  TILQPAASGLLELNLLQQISEPLSRMLPQLLGCLSIVGRKFGSLEWIKSLWKCSALLAEI 84
           TIL+ AASGLLELNLL+QISEPLSRMLPQLLGCLS+VGRKFG LEWI +LWKC  LLAEI
Sbjct: 290 TILRSAASGLLELNLLEQISEPLSRMLPQLLGCLSMVGRKFGWLEWIDNLWKCLTLLAEI 349

Query: 85  SREHFSTLFPLA 97
            RE FST +PLA
Sbjct: 350 LRERFSTYYPLA 361

[Close]

BLAST of Spg001103 vs. ExPASy TrEMBL
Match: A0A1S3CA93 (Non-specific serine/threonine protein kinase OS=Cucumis melo OX=3656 GN=LOC103498422 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.7e-02
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 97   KISIAEQVDYLLKQATSVDNLRNMYKDW 125
            ++SI EQVDYLLKQATSVDNL NMY+ W
Sbjct: 3760 ELSITEQVDYLLKQATSVDNLCNMYEGW 3787

HSP 2 Score: 114.0 bits (284), Expect = 5.3e-22
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 25  TILQPAASGLLELNLLQQISEPLSRMLPQLLGCLSIVGRKFGSLEWIKSLWKCSALLAEI 84
           TIL+  ASGLLE+NLL+QISEPLSRMLPQLLGCLS+VG KFG LEWI++LWKC  LLAEI
Sbjct: 290 TILRSTASGLLEMNLLEQISEPLSRMLPQLLGCLSMVGHKFGWLEWIENLWKCLTLLAEI 349

Query: 85  SREHFSTLFPLA 97
            RE FST +PLA
Sbjct: 350 LRERFSTFYPLA 361

[Close]

BLAST of Spg001103 vs. ExPASy TrEMBL
Match: A0A6J1D4B0 (Non-specific serine/threonine protein kinase OS=Momordica charantia OX=3673 GN=LOC111017174 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 9.4e-03
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 97   KISIAEQVDYLLKQATSVDNLRNMYKDW 125
            ++SIAEQVDYLLKQATSVDNL NMY+ W
Sbjct: 3754 ELSIAEQVDYLLKQATSVDNLCNMYEGW 3781

HSP 2 Score: 113.6 bits (283), Expect = 6.9e-22
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 0


Query: 25  TILQPAASGLLELNLLQQISEPLSRMLPQLLGCLSIVGRKFGSLEWIKSLWKCSALLAEI 84
           TIL+  ASGLLELNLL+QISE LSRMLPQLLGCLS+VGRKFG LEWI++LWKC  LLAEI
Sbjct: 290 TILRSTASGLLELNLLEQISESLSRMLPQLLGCLSMVGRKFGWLEWIENLWKCLTLLAEI 349

Query: 85  SREHFSTLFPLA 97
            RE FST +PLA
Sbjct: 350 LRERFSTFYPLA 361

The following BLAST results are available for this feature:

BLAST of Spg001103 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901831.1	2.0e-23	81.94	serine/threonine-protein kinase SMG1-like isoform X2 [Benincasa hispida]	[more]
XP_038901832.1	2.0e-23	81.94	serine/threonine-protein kinase SMG1-like isoform X3 [Benincasa hispida]	[more]
XP_038901829.1	2.0e-23	81.94	serine/threonine-protein kinase SMG1-like isoform X1 [Benincasa hispida]	[more]
XP_008459237.1	1.3e-22	81.94	PREDICTED: serine/threonine-protein kinase SMG1-like [Cucumis melo]	[more]
KAA0045985.1	1.3e-22	81.94	serine/threonine-protein kinase SMG1-like [Cucumis melo var. makuwa] >TYK13599.1...	[more]

BLAST of Spg001103 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg001103 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TX52	6.2e-23	81.94	Non-specific serine/threonine protein kinase OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0LLV1	6.2e-23	81.94	Non-specific serine/threonine protein kinase OS=Cucumis sativus OX=3659 GN=Csa_2...	[more]
A0A0A0LLV1	9.4e-03	82.14	Non-specific serine/threonine protein kinase OS=Cucumis sativus OX=3659 GN=Csa_2...	[more]
A0A1S3CA93	2.7e-02	78.57	Non-specific serine/threonine protein kinase OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1D4B0	9.4e-03	82.14	Non-specific serine/threonine protein kinase OS=Momordica charantia OX=3673 GN=L...	[more]

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BLAST of Spg001103 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003152	FATC domain	SMART	SM01343	FATC_2	coord: 96..128 e-value: 0.0021 score: 27.3
IPR003152	FATC domain	PFAM	PF02260	FATC	coord: 99..124 e-value: 2.1E-7 score: 30.5
IPR003152	FATC domain	PROSITE	PS51190	FATC	coord: 96..128 score: 10.115312
None	No IPR available	PANTHER	PTHR11139	ATAXIA TELANGIECTASIA MUTATED ATM -RELATED	coord: 97..124
None	No IPR available	PANTHER	PTHR11139:SF71	OS03G0738200 PROTEIN	coord: 97..124
None	No IPR available	PANTHER	PTHR11139	ATAXIA TELANGIECTASIA MUTATED ATM -RELATED	coord: 25..95
None	No IPR available	PANTHER	PTHR11139:SF71	OS03G0738200 PROTEIN	coord: 25..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg001103.1	Spg001103.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0106310	protein serine kinase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0004712	protein serine/threonine/tyrosine kinase activity