Sgr029780 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr029780
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	cold shock domain-containing protein 3-like
Location	tig00153490: 1203991 .. 1212926 (+)
RNA-Seq Expression	Sgr029780
Synteny	Sgr029780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATCGAAGCTAAGAGGAACTTCGATTTCGATCTCGAAGATGACGACGATGAGGATTTCCTTTCTGAGGTGGCCGCGGCTGAAGCTCGTGCCCTCGCCGCTAAACGCAGAAGAATCCCCAATCAAGCCTCCGATCCGCCCAAAAACGCTATCCCGGAGGTTGCGGACAAAGTTTCCCCTAATCCAGACGTGGAGGGACTCTACATCGCCGCTTTGAAAGGAAACCCTACTTTTCTTTCTCAAATTTCAGGTGGGATAGCCAATTCGAGGGTGAAGCTCGTTGCTGCTGGCAACAAAGGGTTCATTTCTGCAAATCCTACTGCTCAATCGGAAGGTGGAGGCTCGTGTTTCAAATGCGGGAAATTAGGGCATTGGGCCAGAGACTGCGATGCTTCGGGAGGTGGTGGGTCTTTTGGCACTTCTGGGAATGATACGTCCATTGCGGAGAAAGCATGCCCCTGCGGATTGGGAGTTTGTTTACTACTAACTGCGAATACGGAGAGGAATCGGGGTCGAAAATTTTACAAATGTCCTGTTCGACAGGTGATGAGGCGTATATTTTTTTCATTAATAGTTTGAATTGATGTTCTTTTTCCTCTGGATAATGTTGGGTTTTGTCAGGAATATATAAGCATTTATTAAAAACCTCGACAAAGATATTGATATCGCTTAAGCCTCTGTTGTATCTTGTAGAAGCTAGAAAGTAAATTATTAATGCGTACTGTAGTGGTGCAACTGGTTTATATGATTTTGGTTTACTAAAACAGTCAAGTTGTTATTCGTTCTCTTACTAACTGGGTCAAATAAATTTTTAGTATATCAGTGCAACAAATTTGTCTAAAGTATCAATTTAAACTGCAAATTTTGCTATTACCAGTTTGAGTTCAAAGCTCATTAAATTATTTTTCTGCCACAATAATTTTTGTCACCGCATGGTTATACACCATTCTCCTACTTTTTTCTGATGTACATTGAATAGTTCTCAGGAAAATGGTGGCTGCGGATTCTTTGAGTGGTGTGACAATGCTTCTGGAACTAATGTGATGACTTATGGAAGCCAAAATCGGGCATCAAGTTCATCATTTTCAGACCTTCCGTGCCCCTGTGGTGCTGGTTCTTGCATAATTCTAACAGCCAAAACAGGGGAAAATGTTGGTCAGCAATTCTATCGTTGCCCTTCATACCAGGTGAAAGTTTTTATAGTAGAAATGTTTGTGCAGTTTTTGTTATCTCGTGATGACGTAATTTTGAATACAAAGTCTCAAAATTTCTTTGTTTGGGCTTAGATTTCTGGTTACTGAACTTACATTGTTTATTGCTCCAAAATCTATATGCATTGGACTCTTCATTCAGACTGATTTGGAAAAGGTAAACTTTGTTCTGTTATCGTGCCATCAAACTTAAGTGCTTCTCATACATTTGCCTCATTTTTTCGAATATATTTTACTCATATAGATGTAGTTACGCCAAGTGTAGTTTCAATGTAATTTCTACTCCCTATTTGTTAATGTTTTCATTTTCAGATCAACTGATTCTGTTAGGAGTTGAAAATTATAGTCTTGAAAATAGCCTAAACGTGAGGCAAGAAGAAGGGTGGAGAAGAGACTTTGTTTTGTGGCTTTAATTATTGCAAGCAATCGAGCTAGTGGCCGTTTAAGCTTCATATTTCTAGTTGGCTTAGATGACTGAAGTGTATAATAAAGACAGGGACGTTGTAGATACATTATATGAACTTAGAAGGAAAGCAACCTTGAGGGGAAGGAACCAATTCTGGTGAGGTCAGGCATATAATAAGAGAATATGCTAAATGGCGTTGCTGAGCTGAGATGACTTCTATCAGGGAAACACCATTATATAGTTATCTCCACATTTCTTTGACCTCATTATGCCTTTATGTCATAGGGTCATACATACCAGTTTAAGCATAAGCAAGAGCAAGTTAATTTGATTCCAACTCTCTGTCCACGTTAGTTTAAGAGAATAAGTGGATATGCTGTTTATTAGTTACTCTTCCCTGCTTTTTATTTGGTGGGGGATGCTTCACTCGTTTCTCCTGGAAATGAGACAATTTAGCACATTTCCAATGTTTATCTCTCTATATTTATTTTATGTCCATGATCTATCCAGTTTTGATGTTTCTCCAAATTTTATACTTGTGTGGTAATTTCTTCATCTCCATCGTCCCCACGGATCGTCTTGATCTGAATATGTTTATTGCTTGCAAATTGCATAAGTTGTACAGTGGTCATATAAATGGATTGATTTACATGTTGAAATTCCTAATCAGTGGGAATTAAATCTGTTCTGCAGGAAACTTGTGGGTTTTTCCAGTGGTGCAGGGAGCCTCCCATAGCTGCCAAGAATCAAGTGAGTGCCTCTAAGGTAGATGGTAACACAAACGATAAAAGCAAAAGCTTTGGTCCAACTCCAAGAACCAGTTCTTCGTGTTATAAATGTGGCGGGGAAGGGCATTGGGCTAGAGATTGCTCGCAATCACATGCATCATCCAATCCTCCTGCAGAGTTGGGGAGAAGTTCATCTTCATTTGGAACCTGTTTCAAATGCGGTAAGCCCGGCCATTGGGCGAGGGACTGTCCTAATTGTTAATAGGTACTCTACTAGCCTCTACTGTTTCATGTATTAGCAGTTGTTTAACTTTAAGCTTGTAAATTCACAAGTTCAGGATAAGTCAGTCACCTGACATTTTGCTTATTTTGCCCGCCATCCATTGCTCCAGTTGACTGTGCCGCCAACAAGCAAATGGTAAATTTTTTTTCACTCTCTCTCTTTCTCTCTCTTCCATTTTCCTCCTTTGGCAGCCGCTCGCTACCGTTCTCCCTCCCTCTCTCTTCCATTATTTAATTTTTTTTTTTTTTGAAATATTGTCTTAACTATGCATTAAAAGATTTTTGTTAGTATTTAAAATTTGTGTTACAATTTTGTAAAACTTCAGAAAAGTAAATGAATCAAAAGAAAAGAAACAAAATAGATAAAAGAGGGACCAAAATAGGATTTCTAACCATTAAATTAAAATGTAACGTTATGGCAAAGCGTCGTCGCCTTGCTCTTTCCTTGCCAGAAAATCTGCGATCTGATTAGCTTCCTTGTAACAGAGAATCACATTCAAATGCTCAAATTCCGAGCACTCCTTCCCACAATCTCCAGGCGAGCATAACCAAGAACCATCGCCCAGCTTCCACGCCGAGTTCTTCGGACCGGTGCTCGACCGGACTACCGCCGGCGAACTATCTCCCCGGCGGCCGAAGCTTCCGACTCGCTGCTGTGGTTCGGCTTCCGTGTCTTGGCGGAGCTTCACGACTGTGTACGCGGCTGCGCCGGCTACTGCTCCGGCGGTGGGCGCTACAATGTATATCCATAGGCCTTTGTAATTGTCTGCTGCGATGGCTGGGCCTAAGGTCCTCGCCGGGTTCATGGAACCACCGGTTGCGTGTCTGCAATATTTTAAAGGATCAAGGATTATTGACTTAAACGTTAAACCTGAAAATTCGAGCATACGTAAGTAGAGAAGACCATTGAAAGTTGGATTCTTTACCTGTAAATTTGTTGAACTCAAATAAGTAATGTTTTGACTAATTGAACTATGTACTGATTGACTATTAAATGATAGTTTATAGATGATTTGTGATATTTAATCAAATTATAAGAATTAATTTGAAAATTTTAAAATCATAGAAACCTGAACATACGTTCAAACTATAAATACTAAAGTTTTAATTTAGCCATAAATTTTCTATTAAATAAACTTAAAAAATTTAAGGATAATAATTGAAACAATTTTTTATGTAATAATTATAATGTGAAATTTAAGAGACAAAAATTCAAATCTATTTTTGCCGACTTAAGTTTAAGTAGTTAAGGTAGTAATAACTTCTTTTAACTAGTTGAACTAATTAATTAATATATTAATAACCTCTTTGAAATGAACTAAAAAAACCCTCTTTAAAGTGTTGGAGGGTTTAATCTCTTTTGAATTATAATAGCTTCGATTTACCTCAATAAATTAACGATGAGATTAATATATATATATATATAACTACTTATGCAAAATATATGTTTTGGGTAGTCCCTTATATTTTAATATTTCTTAATCATATCCTTCCTGTTAATCAATGTTAAAATTGGCAGCTTTCATGCATTATATTTAATGAGTTGGTAGAAATTTAAAAGATAAATTAGATTACCTAAAATAAAAAGTTGAAATTTCTGCAGACTTCTTAGAAAAGAAATTTGGAAGATGAATTAAAAAAATTTCTTATTTAAATAGCTTAATTTCTTCTCTAAATTTTGACCAACTCACTAATTATTCGTAAACTTATAGCCAATTTTAACATTTATGAACAGAAAAGACATAATTGAAAAACACCGAAACAACTAAATTGAAACTATTTATGAAAAAACACCCAACTAAAAGTTAGAACTAAAAAAAGTTTGAGAGAGGGAGAGAGGCAAACAAACCCGGCAACAAGAATGTTGAGCATTACGATACCTCCGATTGCTATTCCGGCCAATTCTCCGACCTGCTAATCGCTTAGATCCAACAAATTTAACTCCTCCTCTTACTTACATCAAAATTCAACTTCTCAATTTCAGAATAAAATGAGAGAATTAAGAGAGGCGATCCATACGATACCGCTCTGGTATCAGTGGCGACTGCAACAATGACGAACATGAGGACGAAGGTGACGATGAACTCGATTACAAGCGCCCGGCAGGTGCCGACGGAGGGCACGGTGACGCCGCCGGACATGAACGGGTGGAAGACGGCCTTGAGGCTGAAAGCAGCGGAGATGGATCCAGAAATCTGAGCGCCGATGTAGAGCGGCAGGTGAAGCCATGGAAAGTGACGGAGAGCGGCGTAAGCTACGGTGACCGATGGATTCAAGTGAGCGCCGGAGATGTGGCCGATGGAGAGGATTACGGCCATCACGGCCAGCCCAGCGCAGATCGCACTTGTTATCAGCCCGCTCTCCGTCGCCTGGTACTTCTCGTTCAGAATCGCCGCCGCCGCCGCCGAAAATAGCATTATGTATGTTCCGATGAACTCCGCCCCTACCTGAGTTTCATAATTTCAATTCCATGACGTGGGTGGATGCGTAAGGATATGACTATTTACACCCACATGAATTGTCTATAAGTGACAATAATTTTTTACGTTTGATTATAATTTTTTTATTTTATTTTAAATCATTTTGATATAACATGTAAAATTATTTCTGTTTCGAATTTCCTTTTTTATATTTATATATATATATTTTGCACTTTATATTTTAGAATATTTAAGTTTGGTTCTTGAATTTTTCTTTGATAATTTCTAAAGTTTCAACTAAAGGCCTACTTTTTAAAAATATTTGTCGGTCGTATAAACTTTTTATAACAATAATTGCAAATATAATATTTTTTAAAAAATAATTATTATAAATTTAACATTTTTTGGAAAAAAAAAGTTACAAATATAAGAATAAGAATTAAAATTTTTGACCTATAAAAAATGTTATTACTGCTTTAACTAGTCGAATTATACTGAGATTGACAATCACTAGATTACTCAATAATAATAATCAAATAATTTTACCTTTTTAAGTAATTATTGATTTACGTGATAATTGACCTAAATGTTGATTCTCATAATCATAATAATAACTAATTTATGCCTGTTATACCTTTGCCATATTTATAATTTTTTGAGTTGCTATTTTGTAGTATTATACTTTTATTTTGTATGTTTACATTAAATCATTTTCATTTTATAATTTACATAAAGCTTATATGTCACTATTTCTTGAACACGTCCTGATACACGTGGCTTAAATATCATGTTTTTTTTTTTTTTTTTATGTAAAGTTGAAGAACTATAATTTGACATTTGTTGGTGTAATAATGAAAGTATAATAAGTAAGAAAGTTTAGTGAATTTATAGGATTTAAAAAACATCATTTTAATCATATAACTTTTTTCAACTCCTTTACTTGTACAAAAAAATGTTCAACTCCAAATCAAAACCCTTTTAAGATTCAATTACAAGTTTGATTTTTAAACTTTTAAAGTTATATATGTTTAATCTATGTATTTTAAAAAGTGTAGGCCCTTGAACTTTTAAAGTAGTGTTTATCTAATTCTTAAATTTTAAAAGTTTTTAATAAGTGTTTGAACTTTTAATTTCATGTCTAATAAAGTTTTATTATTAATTCTATCTGTTTAACACTTAAGATGATTATATTATTTAAAGATTACATGACAGACTAATCTCAAGTAGTTTATGGTGATGCATACATAAATAAAGTTAATGATATGACCTATATTAAGACACAAAATTAAAAGTTTAGTAGTCTATTAAATTTTTTTAAAATACAGATAGACAAAATGTTAAAAAGTTTAAATACCTATTAAGACCTCGACTCTAAAAGTTGTTGGAAGAGATTTATAAGAGAAGGGACATGGAGTTAAAATACCTTCTGCAGGAGAGAGAGATCAGCGAAGCAGTTGGTTCGCGGCACCATTGAAACTTAGCTCAGAAATCTCAACTACCAAGTCTTGGCCGGACGGCAGCGGAGCCGCCGTACGTCTCTGTTTACGACGGAAGGCCGGAGATTGGCGGCGAGATTCAGAGCGTAGCTGCCAGGTCTGTGTCTTTCTTTCTTGCTCCTCCTTCAATCTTAAGCTTTATTAAATAGGAATTAAGATCGTTGACATTTTATTAATCCATTTTCTAGAGAGAGAGAGAGAGATTTCAATTTGGTTGACTTCAGAAATATTCATTGCATCCCACCACTTCATTCACTTAATTATTATTTTAATTTTATAACTATTTAAAATAAATGTTCATTATATACCTTCATAATTAATATTTGTACAGTTTTAAAAACAATGTTTGTCTATAATCTTTCAAAAGTATTAGTTTCAATTTCTTTTTTATTAATTTCAATAAAAATTTGAAATTGCTTGTTGAAGATATTATTTTAGTCCATTTATTAATAAAATTGTGTGTCCAAGAGCAAAAAAAAGAAAAAAAAACTTTTAAAATCGTAGATAAACACTACCATAATTTTATAAATATTTTTAAAATTTCAGTATTTTTCATTTCTTAAAAATACTTCGTTAGTCTCCCGCGATGCCCATTTTTAATTTCAACTTTTTTGATAAATGTTACTAAAAGAATGACGGGTCCACTTGATATAGGATTATCAACGGTTGATGTTTTTTTTTAATTTTATTCGGTTTATTTTTTTTTATACGGCTTCCTTGGTCTTAATTACATCAAAAGCAAATATGAGGGGTCCACTTCATAAAGGTTTTTCCTTTTTTTTTTTTTTTTTTAAATATGCTTATATAGTTAACTTTAAGATCATCTTCAAAATTTTAAAATTTTAAAAATAAAATAAAATAAAAGCATGTTTTTTTATTTTTGAAATTCGGCCAATACTTGAAAAAAAATTTTAATCTCACGATTTTGGAAGTAAAAACAATTACAATCATTCTAAAAGATAGGTTATTTGGGAGGAAAAAAAACTATGAACAAATAACTAAAATAATAGTTATCCAAAATTCTAAATACATTTAAATTATCTTTTAGAATGATATGAACAACCCCAAATCATTATCCAACCAGGCCTTGGTTTTTTTTTTATTTATTAAAGATATTGTTAAAATCTTAAACAAACCTTTAGTAACACTAACAACAAAGTTTCAAAAAAAAAAAAAATTATTGTATACTTTAAAATAATAACAAAACAATTGTTAGTCGACTCCTTAATCTGAATATTAATGACTTACGAATTCTTTGAAAAAGTAGAGATATTTTAACTATTGAGTTAAGCTCATGTTGGCGGATACCATTTTCTTTAATTCTATTATAATCTCAGGTTTATTTCATTTAAGTCTCTAAAAAATTTTCAAATGTCAATTTTAGTTCTTAAACTTTTAAAAAGTAATTGTTTTGGTCATTATCATTATTTTGCTGTCAATATCCACAATTTTCGATATATTCCTTAGCCAGCTTATAGGATCTAATATATATTTGAAGTCACATTTTTTCCTTCTAAAATAGTTGGTTTTACATTTGTTATTGAATTGAATTCAGCCTGATTTGATTAATAATTGAGATTCTTGGCTAGAAGAAAGGTTTTGTGATATGACATAGATGCCCACTAATTTGTCCATTGGGCTAATCCTAATGGATGATAAGATTCTCAATCAATTTGATTAAATTTTAAAGAATCTTTTTCACTATTCATCCTATTCGAGATAGACGAATCTTTCAATCAAGATGTTCTTCCCTTTTCTATGCGAGCTACTGCTTGAACTGAAACCAACAATATATGAATTTAATGGACAAATATTAACCCATTCATCTTTTAAAAAGGTTTTTTTTTTTTTTAATTCTTGAAAAGAATAGATGCGATACTTGAAATGAATTCATATTTCATAATCACGTGGACAATTAACAGCTGAAAATTCGGCTACTCTTCCCTGTCGTTTACCATCAATCCTTCTCTTCTCTCTCCTCTCTCGCTCTTTCTGAGCGTATTGGTCATTCTACAGGAGGGAGGAGAGTTCTGGTTTTGCAGCGGTTTATGTGTAATCGAGAGGAGATAGTAAGGTAAAAGAACAATTTGCTTTGACGGGATTCTGATTTCTGAGTTTGGCCGATGACGAAGAAGCATCGGAATGGAGAAATCTGGGAATTTGAGCGAGAAATGTCCGGCGGAACAGGAGGAGTTGAAGACGTGATTCTTGGAATTGATGGAGGCACGACCTCCACCATCTGCGTTTGCGTTCCGTTCTTACAACCGCAGTCTCTCCACCTTCCTGATCCTCTTCCTCTTCTTGCCCGAGTCGAAGCCGGCTGCTCGAATCATAACAGCGTTGGCGGTACTCTCCCCCTCTCTCTCTCTCTGTGCCTATCACTTTCTTGA

mRNA sequence

ATGAGGATCGAAGCTAAGAGGAACTTCGATTTCGATCTCGAAGATGACGACGATGAGGATTTCCTTTCTGAGGTGGCCGCGGCTGAAGCTCGTGCCCTCGCCGCTAAACGCAGAAGAATCCCCAATCAAGCCTCCGATCCGCCCAAAAACGCTATCCCGGAGGTTGCGGACAAAGTTTCCCCTAATCCAGACGTGGAGGGACTCTACATCGCCGCTTTGAAAGGAAACCCTACTTTTCTTTCTCAAATTTCAGGTGGGATAGCCAATTCGAGGGTGAAGCTCGTTGCTGCTGGCAACAAAGGGTTCATTTCTGCAAATCCTACTGCTCAATCGGAAGGTGGAGGCTCGTGTTTCAAATGCGGGAAATTAGGGCATTGGGCCAGAGACTGCGATGCTTCGGGAGGTGGTGGGTCTTTTGGCACTTCTGGGAATGATACGTCCATTGCGGAGAAAGCATGCCCCTGCGGATTGGGAGTTTGTTTACTACTAACTGCGAATACGGAGAGGAATCGGGGTCGAAAATTTTACAAATGTCCTGTTCGACAGGAAAATGGTGGCTGCGGATTCTTTGAGTGGTGTGACAATGCTTCTGGAACTAATGTGATGACTTATGGAAGCCAAAATCGGGCATCAAGTTCATCATTTTCAGACCTTCCGTGCCCCTGTGGTGCTGGTTCTTGCATAATTCTAACAGCCAAAACAGGGGAAAATGTTGGTCAGCAATTCTATCGTTGCCCTTCATACCAGGAAACTTGTGGGTTTTTCCAGTGGTGCAGGGAGCCTCCCATAGCTGCCAAGAATCAAGTGAGTGCCTCTAAGGGCATTGGGCTAGAGATTGCTCGCAATCACATGCATCATCCAATCCTCCTGCAGAGTTGGGGAGAAGTTCATCTTCATTTGGAACCTGTTTCAAATGCGGTAAGCCCGGCCATTGGGCGAGGGACTGTCCTAATTGTTAATAGTCACCTGACATTTTGCTTATTTTGCCCGCCATCCATTGCTCCAGTTGACTGTGCCGCCAACAAGCAAATGAGAATCACATTCAAATGCTCAAATTCCGAGCACTCCTTCCCACAATCTCCAGGCGAGCATAACCAAGAACCATCGCCCAGCTTCCACGCCGAGTTCTTCGGACCGGTGCTCGACCGGACTACCGCCGGCGAACTATCTCCCCGGCGGCCGAAGCTTCCGACTCGCTGCTGTGGTTCGGCTTCCGTGTCTTGGCGGAGCTTCACGACTGTGTACGCGGCTGCGCCGGCTACTGCTCCGGCGGTGGGCGCTACAATTGGCGACTGCAACAATGACGAACATGAGGACGAAGGTGACGATGAACTCGATTACAAGCGCCCGGCAGGTGCCGACGGAGGGCACGGTGACGCCGCCGGACATGAACGGGTGGAAGACGGCCTTGAGGCTGAAAGCAGCGGAGATGGATCCAGAAATCTGAGCGCCGATGTAGAGCGGCAGGTGAAGCCATGGAAAGTGACGGAGAGCGGCGTAAGCTACGGTGACCGATGGATTCAAGTGAGCGCCGGAGATGTGGCCGATGGAGAGGATTACGGCCATCACGGCCAGCCCAGCGCAGATCGCACTTGTTATCAGCCCGCTCTCCGTCGCCTGAAGGGACATGGAGTTAAAATACCTTCTGCAGGAGAGAGAGATCAGCGAAGCAGTTGGTTCGCGGCACCATTGAAACTTAGCTCAGAAATCTCAACTACCAAGTCTTGGCCGGACGGCAGCGGAGCCGCCGTACGTCTCTGTTTACGACGGAAGGCCGGAGATTGGCGGCGAGATTCAGAGCGTAGCTGCCAGCTGAAAATTCGGCTACTCTTCCCTGTCGTTTACCATCAATCCTTCTCTTCTCTCTCCTCTCTCGCTCTTTCTGAGCGTATTGGTCATTCTACAGGAGGGAGGAGAGTTCTGGTTTTGCAGCGGTTTATGTGTAATCGAGAGGAGATAAAGCATCGGAATGGAGAAATCTGGGAATTTGAGCGAGAAATGTCCGGCGGAACAGGAGGAGTTGAAGACGTGATTCTTGGAATTGATGGAGGCACGACCTCCACCATCTGCGTTTGCGTTCCGTTCTTACAACCGCAGTCTCTCCACCTTCCTGATCCTCTTCCTCTTCTTGCCCGAGTCGAAGCCGGCTGCTCGAATCATAACAGCGTTGGCGGTACTCTCCCCCTCTCTCTCTCTCTGTGCCTATCACTTTCTTGA

Coding sequence (CDS)

ATGAGGATCGAAGCTAAGAGGAACTTCGATTTCGATCTCGAAGATGACGACGATGAGGATTTCCTTTCTGAGGTGGCCGCGGCTGAAGCTCGTGCCCTCGCCGCTAAACGCAGAAGAATCCCCAATCAAGCCTCCGATCCGCCCAAAAACGCTATCCCGGAGGTTGCGGACAAAGTTTCCCCTAATCCAGACGTGGAGGGACTCTACATCGCCGCTTTGAAAGGAAACCCTACTTTTCTTTCTCAAATTTCAGGTGGGATAGCCAATTCGAGGGTGAAGCTCGTTGCTGCTGGCAACAAAGGGTTCATTTCTGCAAATCCTACTGCTCAATCGGAAGGTGGAGGCTCGTGTTTCAAATGCGGGAAATTAGGGCATTGGGCCAGAGACTGCGATGCTTCGGGAGGTGGTGGGTCTTTTGGCACTTCTGGGAATGATACGTCCATTGCGGAGAAAGCATGCCCCTGCGGATTGGGAGTTTGTTTACTACTAACTGCGAATACGGAGAGGAATCGGGGTCGAAAATTTTACAAATGTCCTGTTCGACAGGAAAATGGTGGCTGCGGATTCTTTGAGTGGTGTGACAATGCTTCTGGAACTAATGTGATGACTTATGGAAGCCAAAATCGGGCATCAAGTTCATCATTTTCAGACCTTCCGTGCCCCTGTGGTGCTGGTTCTTGCATAATTCTAACAGCCAAAACAGGGGAAAATGTTGGTCAGCAATTCTATCGTTGCCCTTCATACCAGGAAACTTGTGGGTTTTTCCAGTGGTGCAGGGAGCCTCCCATAGCTGCCAAGAATCAAGTGAGTGCCTCTAAGGGCATTGGGCTAGAGATTGCTCGCAATCACATGCATCATCCAATCCTCCTGCAGAGTTGGGGAGAAGTTCATCTTCATTTGGAACCTGTTTCAAATGCGGTAAGCCCGGCCATTGGGCGAGGGACTGTCCTAATTGTTAATAGTCACCTGACATTTTGCTTATTTTGCCCGCCATCCATTGCTCCAGTTGACTGTGCCGCCAACAAGCAAATGAGAATCACATTCAAATGCTCAAATTCCGAGCACTCCTTCCCACAATCTCCAGGCGAGCATAACCAAGAACCATCGCCCAGCTTCCACGCCGAGTTCTTCGGACCGGTGCTCGACCGGACTACCGCCGGCGAACTATCTCCCCGGCGGCCGAAGCTTCCGACTCGCTGCTGTGGTTCGGCTTCCGTGTCTTGGCGGAGCTTCACGACTGTGTACGCGGCTGCGCCGGCTACTGCTCCGGCGGTGGGCGCTACAATTGGCGACTGCAACAATGACGAACATGAGGACGAAGGTGACGATGAACTCGATTACAAGCGCCCGGCAGGTGCCGACGGAGGGCACGGTGACGCCGCCGGACATGAACGGGTGGAAGACGGCCTTGAGGCTGAAAGCAGCGGAGATGGATCCAGAAATCTGAGCGCCGATGTAGAGCGGCAGGTGAAGCCATGGAAAGTGACGGAGAGCGGCGTAAGCTACGGTGACCGATGGATTCAAGTGAGCGCCGGAGATGTGGCCGATGGAGAGGATTACGGCCATCACGGCCAGCCCAGCGCAGATCGCACTTGTTATCAGCCCGCTCTCCGTCGCCTGAAGGGACATGGAGTTAAAATACCTTCTGCAGGAGAGAGAGATCAGCGAAGCAGTTGGTTCGCGGCACCATTGAAACTTAGCTCAGAAATCTCAACTACCAAGTCTTGGCCGGACGGCAGCGGAGCCGCCGTACGTCTCTGTTTACGACGGAAGGCCGGAGATTGGCGGCGAGATTCAGAGCGTAGCTGCCAGCTGAAAATTCGGCTACTCTTCCCTGTCGTTTACCATCAATCCTTCTCTTCTCTCTCCTCTCTCGCTCTTTCTGAGCGTATTGGTCATTCTACAGGAGGGAGGAGAGTTCTGGTTTTGCAGCGGTTTATGTGTAATCGAGAGGAGATAAAGCATCGGAATGGAGAAATCTGGGAATTTGAGCGAGAAATGTCCGGCGGAACAGGAGGAGTTGAAGACGTGATTCTTGGAATTGATGGAGGCACGACCTCCACCATCTGCGTTTGCGTTCCGTTCTTACAACCGCAGTCTCTCCACCTTCCTGATCCTCTTCCTCTTCTTGCCCGAGTCGAAGCCGGCTGCTCGAATCATAACAGCGTTGGCGGTACTCTCCCCCTCTCTCTCTCTCTGTGCCTATCACTTTCTTGA

Protein sequence

MRIEAKRNFDFDLEDDDDEDFLSEVAAAEARALAAKRRRIPNQASDPPKNAIPEVADKVSPNPDVEGLYIAALKGNPTFLSQISGGIANSRVKLVAAGNKGFISANPTAQSEGGGSCFKCGKLGHWARDCDASGGGGSFGTSGNDTSIAEKACPCGLGVCLLLTANTERNRGRKFYKCPVRQENGGCGFFEWCDNASGTNVMTYGSQNRASSSSFSDLPCPCGAGSCIILTAKTGENVGQQFYRCPSYQETCGFFQWCREPPIAAKNQVSASKGIGLEIARNHMHHPILLQSWGEVHLHLEPVSNAVSPAIGRGTVLIVNSHLTFCLFCPPSIAPVDCAANKQMRITFKCSNSEHSFPQSPGEHNQEPSPSFHAEFFGPVLDRTTAGELSPRRPKLPTRCCGSASVSWRSFTTVYAAAPATAPAVGATIGDCNNDEHEDEGDDELDYKRPAGADGGHGDAAGHERVEDGLEAESSGDGSRNLSADVERQVKPWKVTESGVSYGDRWIQVSAGDVADGEDYGHHGQPSADRTCYQPALRRLKGHGVKIPSAGERDQRSSWFAAPLKLSSEISTTKSWPDGSGAAVRLCLRRKAGDWRRDSERSCQLKIRLLFPVVYHQSFSSLSSLALSERIGHSTGGRRVLVLQRFMCNREEIKHRNGEIWEFEREMSGGTGGVEDVILGIDGGTTSTICVCVPFLQPQSLHLPDPLPLLARVEAGCSNHNSVGGTLPLSLSLCLSLS

Homology

[Close]

BLAST of Sgr029780 vs. NCBI nr
Match: XP_022136561.1 (DNA-binding protein HEXBP-like [Momordica charantia] >XP_022136562.1 DNA-binding protein HEXBP-like [Momordica charantia] >XP_022136563.1 DNA-binding protein HEXBP-like [Momordica charantia] >XP_022136564.1 DNA-binding protein HEXBP-like [Momordica charantia])

HSP 1 Score: 465.7 bits (1197), Expect = 7.5e-127
Identity = 225/276 (81.52%), Postives = 242/276 (87.68%), Query Frame = 0


Query: 1   MRIEAKRNFDFDLEDDDDEDFLSEVAAAEARALAAKRRRIPNQASDPPKNAIPEVADKVS 60
           M+IEAKRNF+FDLEDDDDEDFLS VAAAEARALA+KRRRIPN   DPPK AI E      
Sbjct: 1   MKIEAKRNFEFDLEDDDDEDFLSAVAAAEARALASKRRRIPNHTIDPPKMAIAE------ 60

Query: 61  PNPDVEGLYIAALKGNPTFLSQISGGIANSRVKLVAAGNKGFISANPTAQSEGGGSCFKC 120
              + EGLY+AAL+G P   SQISGG ANSR K VAA N+GF+SANPTAQSEGGGSCFKC
Sbjct: 61  ---EPEGLYMAALRGKPNLPSQISGGTANSRAKGVAAANRGFVSANPTAQSEGGGSCFKC 120

Query: 121 GKLGHWARDCDASGGGGSFGTSGNDTSIAEKACPCGLGVCLLLTANTERNRGRKFYKCPV 180
           GKLGHWARDCDA GGGGSFGT+G D S+AEKACPCGLGVC++LTANTERNRGRKFYKCPV
Sbjct: 121 GKLGHWARDCDAPGGGGSFGTAGTDASVAEKACPCGLGVCIVLTANTERNRGRKFYKCPV 180

Query: 181 RQENGGCGFFEWCDNASGTNVMTYGSQNRASSSSFSDLPCPCGAGSCIILTAKTGENVGQ 240
           RQENGGCGFFEWCD+ASGTNVMTYGSQNRASSS FSDL CPCGAGSCIILTAKTGENVGQ
Sbjct: 181 RQENGGCGFFEWCDSASGTNVMTYGSQNRASSSLFSDLMCPCGAGSCIILTAKTGENVGQ 240

Query: 241 QFYRCPSYQETCGFFQWCREPPIAAKNQVSASKGIG 277
           QFYRCPSYQE+CGFFQWC+EPP+A KNQV+  K  G
Sbjct: 241 QFYRCPSYQESCGFFQWCKEPPMATKNQVNDYKIYG 267

[Close]

BLAST of Sgr029780 vs. NCBI nr
Match: KAG7015092.1 (DNA topoisomerase 3-alpha, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 465.3 bits (1196), Expect = 9.7e-127
Identity = 227/278 (81.65%), Postives = 241/278 (86.69%), Query Frame = 0


Query: 1   MRIEAKRNFDFDLEDDDDEDFLSEVAAAEARALAAKRRRIPNQASDPPKNAIPEVADKVS 60
           M+ EAKRNFDFDL DDDDEDFLSEVAAAEARALA+KRR+IPN   DPPK AI EV  KVS
Sbjct: 1   MKFEAKRNFDFDLGDDDDEDFLSEVAAAEARALASKRRKIPNHTIDPPKRAIAEVTSKVS 60

Query: 61  PNPDVEGLYIAALKGNPTFLSQISGGIANSRVKLVAAGNKGFISANPT--AQSEGGGSCF 120
           PN D EG+YIAALKG+P  LSQ+SG IANS       GNKGFISAN T  AQSEGGGSCF
Sbjct: 61  PNADAEGIYIAALKGDPIILSQLSGRIANS-------GNKGFISANTTAHAQSEGGGSCF 120

Query: 121 KCGKLGHWARDCDASGGGGSFGTSGNDTSIAEKACPCGLGVCLLLTANTERNRGRKFYKC 180
           KCGKLGHWARDCDA G GGSF  SGNDTS+AEK+CPCG+GVC++LTANTERNRGRKFYKC
Sbjct: 121 KCGKLGHWARDCDAPGSGGSFSASGNDTSVAEKSCPCGMGVCVVLTANTERNRGRKFYKC 180

Query: 181 PVRQENGGCGFFEWCDNASGTNVMTYGSQNRASSSSFSDLPCPCGAGSCIILTAKTGENV 240
           PVRQENGGCGFFEWCDNAS TN+MTYGSQNRASSSSFSDL CPCGAGSCI LTAKTGENV
Sbjct: 181 PVRQENGGCGFFEWCDNASATNIMTYGSQNRASSSSFSDLKCPCGAGSCITLTAKTGENV 240

Query: 241 GQQFYRCPSYQETCGFFQWCREPPIAAKNQVSASKGIG 277
           GQQFYRCPSYQ TCGFFQWC+E  +AAKNQVS SK  G
Sbjct: 241 GQQFYRCPSYQATCGFFQWCKEASMAAKNQVSGSKVYG 271

[Close]

BLAST of Sgr029780 vs. NCBI nr
Match: XP_023552737.1 (cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 462.2 bits (1188), Expect = 8.2e-126
Identity = 224/278 (80.58%), Postives = 240/278 (86.33%), Query Frame = 0


Query: 1   MRIEAKRNFDFDLEDDDDEDFLSEVAAAEARALAAKRRRIPNQASDPPKNAIPEVADKVS 60
           M+ EAKRNFDFDL DDDDEDFLSEVAAAEARALA+KRR+IPN   DPPK A+ EV  KVS
Sbjct: 1   MKFEAKRNFDFDLGDDDDEDFLSEVAAAEARALASKRRKIPNHTIDPPKRAVAEVTSKVS 60

Query: 61  PNPDVEGLYIAALKGNPTFLSQISGGIANSRVKLVAAGNKGFISANPT--AQSEGGGSCF 120
           PN D EG+YIAALKG+P  LSQ+SG IANS       GNKGFISAN T  AQSEGGGSCF
Sbjct: 61  PNADAEGIYIAALKGDPIILSQLSGRIANS-------GNKGFISANTTAHAQSEGGGSCF 120

Query: 121 KCGKLGHWARDCDASGGGGSFGTSGNDTSIAEKACPCGLGVCLLLTANTERNRGRKFYKC 180
           KCGKLGHWARDCDA G GGSF  SGNDTS+AEK+CPCG+GVC++LTANTERNRGRKFYKC
Sbjct: 121 KCGKLGHWARDCDAPGSGGSFSASGNDTSVAEKSCPCGMGVCVVLTANTERNRGRKFYKC 180

Query: 181 PVRQENGGCGFFEWCDNASGTNVMTYGSQNRASSSSFSDLPCPCGAGSCIILTAKTGENV 240
            VRQENGGCGFFEWCDNAS TN+MTYGSQNRASSSSFSDL CPCGAGSCI LTAKTG+NV
Sbjct: 181 AVRQENGGCGFFEWCDNASSTNIMTYGSQNRASSSSFSDLKCPCGAGSCITLTAKTGDNV 240

Query: 241 GQQFYRCPSYQETCGFFQWCREPPIAAKNQVSASKGIG 277
           GQQFYRCPSYQ TCGFFQWC+EP +AAKNQ S SK  G
Sbjct: 241 GQQFYRCPSYQATCGFFQWCKEPSMAAKNQASGSKVYG 271

[Close]

BLAST of Sgr029780 vs. NCBI nr
Match: XP_022931285.1 (cold shock domain-containing protein 3-like [Cucurbita moschata])

HSP 1 Score: 461.5 bits (1186), Expect = 1.4e-125
Identity = 227/279 (81.36%), Postives = 242/279 (86.74%), Query Frame = 0


Query: 1   MRIEAKRNFDFDL-EDDDDEDFLSEVAAAEARALAAKRRRIPNQASDPPKNAIPEVADKV 60
           M+ EAKRNFDFDL +DDDDEDFLSEVAAAEARALA+KRR+IPN   DPPK AI EV  KV
Sbjct: 1   MKFEAKRNFDFDLGDDDDDEDFLSEVAAAEARALASKRRKIPNHTIDPPKRAIAEVTSKV 60

Query: 61  SPNPDVEGLYIAALKGNPTFLSQISGGIANSRVKLVAAGNKGFISANPT--AQSEGGGSC 120
           SPN D EG+YIAALKG+P  LSQ+SG IANS       GNKGFISAN T  AQSEGGGSC
Sbjct: 61  SPNADAEGIYIAALKGDPIILSQLSGRIANS-------GNKGFISANTTAHAQSEGGGSC 120

Query: 121 FKCGKLGHWARDCDASGGGGSFGTSGNDTSIAEKACPCGLGVCLLLTANTERNRGRKFYK 180
           FKCGKLGHWARDCDA G GGSF  SGNDTS+AEK+CPCG+GVC++LTANTERNRGRKFYK
Sbjct: 121 FKCGKLGHWARDCDAPGSGGSFSFSGNDTSVAEKSCPCGMGVCVVLTANTERNRGRKFYK 180

Query: 181 CPVRQENGGCGFFEWCDNASGTNVMTYGSQNRASSSSFSDLPCPCGAGSCIILTAKTGEN 240
           CPVRQENGGCGFFEWCDNAS TN+MTYGSQNRASSSSFSDL CPCGAGSCI LTAKTGEN
Sbjct: 181 CPVRQENGGCGFFEWCDNASATNIMTYGSQNRASSSSFSDLKCPCGAGSCITLTAKTGEN 240

Query: 241 VGQQFYRCPSYQETCGFFQWCREPPIAAKNQVSASKGIG 277
           VGQQFYRCPSYQ TCGFFQWC+E  +AAKNQVS SK  G
Sbjct: 241 VGQQFYRCPSYQATCGFFQWCKEASMAAKNQVSGSKVYG 272

[Close]

BLAST of Sgr029780 vs. NCBI nr
Match: KAG6577083.1 (DNA topoisomerase 3-alpha, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 459.9 bits (1182), Expect = 4.1e-125
Identity = 225/278 (80.94%), Postives = 239/278 (85.97%), Query Frame = 0


Query: 1   MRIEAKRNFDFDLEDDDDEDFLSEVAAAEARALAAKRRRIPNQASDPPKNAIPEVADKVS 60
           M+ EAK NFDFDL DDDDEDFL EVAAAEARALA+KRR+IPN   DPPK AI EV  KVS
Sbjct: 1   MKFEAKWNFDFDLGDDDDEDFLLEVAAAEARALASKRRKIPNHTIDPPKRAIAEVTSKVS 60

Query: 61  PNPDVEGLYIAALKGNPTFLSQISGGIANSRVKLVAAGNKGFISANPT--AQSEGGGSCF 120
           PN D EG+YIAALKG+P  LSQ+SG IANS       GNKGFISAN T  AQSEGGGSCF
Sbjct: 61  PNADAEGIYIAALKGDPIILSQLSGRIANS-------GNKGFISANTTAHAQSEGGGSCF 120

Query: 121 KCGKLGHWARDCDASGGGGSFGTSGNDTSIAEKACPCGLGVCLLLTANTERNRGRKFYKC 180
           KCGKLGHWARDCDA G GGSF  SGNDTS+AEK+CPCG+GVC++LTANTERNRGRKFYKC
Sbjct: 121 KCGKLGHWARDCDAPGSGGSFSASGNDTSVAEKSCPCGMGVCVVLTANTERNRGRKFYKC 180

Query: 181 PVRQENGGCGFFEWCDNASGTNVMTYGSQNRASSSSFSDLPCPCGAGSCIILTAKTGENV 240
           PVRQENGGCGFFEWCDNAS TN+MTYGSQNRASSSSFSDL CPCGAGSCI LTAKTGENV
Sbjct: 181 PVRQENGGCGFFEWCDNASATNIMTYGSQNRASSSSFSDLKCPCGAGSCITLTAKTGENV 240

Query: 241 GQQFYRCPSYQETCGFFQWCREPPIAAKNQVSASKGIG 277
           GQQFYRCPSYQ TCGFFQWC+E  +AAKNQVS SK  G
Sbjct: 241 GQQFYRCPSYQATCGFFQWCKEASMAAKNQVSGSKVYG 271

[Close]

BLAST of Sgr029780 vs. ExPASy Swiss-Prot
Match: Q9NG98 (DNA topoisomerase 3-alpha OS=Drosophila melanogaster OX=7227 GN=Top3alpha PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 6.8e-06
Identity = 40/159 (25.16%), Postives = 63/159 (39.62%), Query Frame = 0


Query: 170  NRGRKFYKCPVRQENGGCGFFEWCD---------NASGT---NVMTYGS----------- 229
            N GR +YKCP   E   C FF+W D         N++G+   +  ++GS           
Sbjct: 1053 NLGRLYYKCPKPDE---CNFFQWADEPPSSAKSKNSTGSAPQSTTSWGSNRVVTLPSIQQ 1112

Query: 230  -----------------------------QNRASSSSFSDLPCPCGAGSCIILTAKTGEN 277
                                         +N A+     ++ C CG  +  +   K G N
Sbjct: 1113 SNSQRGQSSMRSNSSSTVTITQTKTKQQERNTATPGDGEEVMCNCGQLASQLTVRKDGPN 1172

[Close]

BLAST of Sgr029780 vs. ExPASy Swiss-Prot
Match: C7J0A2 (DNA topoisomerase 3-alpha OS=Oryza sativa subsp. japonica OX=39947 GN=TOP3A PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.5e-05
Identity = 33/91 (36.26%), Postives = 41/91 (45.05%), Query Frame = 0


Query: 135 GGGSFGTSGNDTSIAEKACPCGLGVCLLLTANTERNRGRKFYKCPVRQENGGCGFFEWCD 194
           G  S  T  +  +  +  C      C+L TANTE NRGRKFYKC    +N  CGFF W D
Sbjct: 790 GFRSTHTQSSGNASGQVQCTSCREPCVLRTANTEANRGRKFYKC----QNLACGFFAWED 849

Query: 195 NASGTNVMTYGSQNRASSSSFSDLPCPCGAG 226
           +   +     G + R   SS         AG
Sbjct: 850 DVENSAPRGRGGRGRGGRSSSRQSSASASAG 876

[Close]

BLAST of Sgr029780 vs. ExPASy Swiss-Prot
Match: Q9LVP1 (DNA topoisomerase 3-alpha OS=Arabidopsis thaliana OX=3702 GN=TOP3A PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.4e-05
Identity = 37/102 (36.27%), Postives = 48/102 (47.06%), Query Frame = 0


Query: 117 CFKCGKLGHWARDC----DASGGGGSFGTSGNDTSIAEKACPCGLGVCLLLTANTERNRG 176
           C  C + GH + +C     AS       T+  +         CG   C+L TANTE NRG
Sbjct: 767 CIHCQQRGHASTNCPSRVPASRNSRPTATNPRNDESTVSCNTCG-SQCVLRTANTEANRG 826

Query: 177 RKFYKCPVRQENGGCGFFEWCD---NASGTNVMTYGSQNRAS 212
           R+F+ CP +    GC FF W D   N+SG    T GS +  S
Sbjct: 827 RQFFSCPTQ----GCSFFAWEDSINNSSGN--ATTGSNSGGS 861

[Close]

BLAST of Sgr029780 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-04
Identity = 26/63 (41.27%), Postives = 33/63 (52.38%), Query Frame = 0


Query: 95  VAAGNKGFISANPTAQSEGGGSCFKCGKLGHWARDCDASGGGGSFGTSGNDTSIAEKAC- 154
           V A   G ++    +    GG+CF CG++GH A+DCD   GG SFG  G   S  E  C 
Sbjct: 74  VTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECY 133

Query: 155 PCG 157
            CG
Sbjct: 134 MCG 136

[Close]

BLAST of Sgr029780 vs. ExPASy TrEMBL
Match: A0A6J1C4N6 (DNA-binding protein HEXBP-like OS=Momordica charantia OX=3673 GN=LOC111008238 PE=4 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 3.6e-127
Identity = 225/276 (81.52%), Postives = 242/276 (87.68%), Query Frame = 0


Query: 1   MRIEAKRNFDFDLEDDDDEDFLSEVAAAEARALAAKRRRIPNQASDPPKNAIPEVADKVS 60
           M+IEAKRNF+FDLEDDDDEDFLS VAAAEARALA+KRRRIPN   DPPK AI E      
Sbjct: 1   MKIEAKRNFEFDLEDDDDEDFLSAVAAAEARALASKRRRIPNHTIDPPKMAIAE------ 60

Query: 61  PNPDVEGLYIAALKGNPTFLSQISGGIANSRVKLVAAGNKGFISANPTAQSEGGGSCFKC 120
              + EGLY+AAL+G P   SQISGG ANSR K VAA N+GF+SANPTAQSEGGGSCFKC
Sbjct: 61  ---EPEGLYMAALRGKPNLPSQISGGTANSRAKGVAAANRGFVSANPTAQSEGGGSCFKC 120

Query: 121 GKLGHWARDCDASGGGGSFGTSGNDTSIAEKACPCGLGVCLLLTANTERNRGRKFYKCPV 180
           GKLGHWARDCDA GGGGSFGT+G D S+AEKACPCGLGVC++LTANTERNRGRKFYKCPV
Sbjct: 121 GKLGHWARDCDAPGGGGSFGTAGTDASVAEKACPCGLGVCIVLTANTERNRGRKFYKCPV 180

Query: 181 RQENGGCGFFEWCDNASGTNVMTYGSQNRASSSSFSDLPCPCGAGSCIILTAKTGENVGQ 240
           RQENGGCGFFEWCD+ASGTNVMTYGSQNRASSS FSDL CPCGAGSCIILTAKTGENVGQ
Sbjct: 181 RQENGGCGFFEWCDSASGTNVMTYGSQNRASSSLFSDLMCPCGAGSCIILTAKTGENVGQ 240

Query: 241 QFYRCPSYQETCGFFQWCREPPIAAKNQVSASKGIG 277
           QFYRCPSYQE+CGFFQWC+EPP+A KNQV+  K  G
Sbjct: 241 QFYRCPSYQESCGFFQWCKEPPMATKNQVNDYKIYG 267

[Close]

BLAST of Sgr029780 vs. ExPASy TrEMBL
Match: A0A6J1EZ11 (cold shock domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111437513 PE=4 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 6.8e-126
Identity = 227/279 (81.36%), Postives = 242/279 (86.74%), Query Frame = 0


Query: 1   MRIEAKRNFDFDL-EDDDDEDFLSEVAAAEARALAAKRRRIPNQASDPPKNAIPEVADKV 60
           M+ EAKRNFDFDL +DDDDEDFLSEVAAAEARALA+KRR+IPN   DPPK AI EV  KV
Sbjct: 1   MKFEAKRNFDFDLGDDDDDEDFLSEVAAAEARALASKRRKIPNHTIDPPKRAIAEVTSKV 60

Query: 61  SPNPDVEGLYIAALKGNPTFLSQISGGIANSRVKLVAAGNKGFISANPT--AQSEGGGSC 120
           SPN D EG+YIAALKG+P  LSQ+SG IANS       GNKGFISAN T  AQSEGGGSC
Sbjct: 61  SPNADAEGIYIAALKGDPIILSQLSGRIANS-------GNKGFISANTTAHAQSEGGGSC 120

Query: 121 FKCGKLGHWARDCDASGGGGSFGTSGNDTSIAEKACPCGLGVCLLLTANTERNRGRKFYK 180
           FKCGKLGHWARDCDA G GGSF  SGNDTS+AEK+CPCG+GVC++LTANTERNRGRKFYK
Sbjct: 121 FKCGKLGHWARDCDAPGSGGSFSFSGNDTSVAEKSCPCGMGVCVVLTANTERNRGRKFYK 180

Query: 181 CPVRQENGGCGFFEWCDNASGTNVMTYGSQNRASSSSFSDLPCPCGAGSCIILTAKTGEN 240
           CPVRQENGGCGFFEWCDNAS TN+MTYGSQNRASSSSFSDL CPCGAGSCI LTAKTGEN
Sbjct: 181 CPVRQENGGCGFFEWCDNASATNIMTYGSQNRASSSSFSDLKCPCGAGSCITLTAKTGEN 240

Query: 241 VGQQFYRCPSYQETCGFFQWCREPPIAAKNQVSASKGIG 277
           VGQQFYRCPSYQ TCGFFQWC+E  +AAKNQVS SK  G
Sbjct: 241 VGQQFYRCPSYQATCGFFQWCKEASMAAKNQVSGSKVYG 272

[Close]

BLAST of Sgr029780 vs. ExPASy TrEMBL
Match: A0A6J1JBZ0 (cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111483073 PE=4 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 3.4e-125
Identity = 226/279 (81.00%), Postives = 243/279 (87.10%), Query Frame = 0


Query: 1   MRIEAKRNFDFDL-EDDDDEDFLSEVAAAEARALAAKRRRIPNQASDPPKNAIPEVADKV 60
           M+ EAKRNFDFDL +DDDDEDFLSEVAAAEARALA+KRR+IPN   +PPK AI EV +KV
Sbjct: 1   MKFEAKRNFDFDLGDDDDDEDFLSEVAAAEARALASKRRKIPNHTINPPKRAIAEVTNKV 60

Query: 61  SPNPDVEGLYIAALKGNPTFLSQISGGIANSRVKLVAAGNKGFISANPT--AQSEGGGSC 120
           SPN D EG+YIAALKG+P  LSQ+SG IANS       GNKGFISAN T  AQS+GGGSC
Sbjct: 61  SPNVDAEGIYIAALKGDPIILSQLSGRIANS-------GNKGFISANTTAHAQSDGGGSC 120

Query: 121 FKCGKLGHWARDCDASGGGGSFGTSGNDTSIAEKACPCGLGVCLLLTANTERNRGRKFYK 180
           FKCGKLGHWARDCDA G GGSF  S NDTS+AEK+CPCG GVC++LTANTERNRGRKFYK
Sbjct: 121 FKCGKLGHWARDCDAPGSGGSFSASENDTSVAEKSCPCGRGVCVVLTANTERNRGRKFYK 180

Query: 181 CPVRQENGGCGFFEWCDNASGTNVMTYGSQNRASSSSFSDLPCPCGAGSCIILTAKTGEN 240
           CPVRQENGGCGFFEWCDNAS TN+MTYGSQNRASSSSFSDL CPCGAGSCI LTAKTGEN
Sbjct: 181 CPVRQENGGCGFFEWCDNASATNIMTYGSQNRASSSSFSDLKCPCGAGSCITLTAKTGEN 240

Query: 241 VGQQFYRCPSYQETCGFFQWCREPPIAAKNQVSASKGIG 277
           VGQQFYRCPSYQ TCGFFQWC+EP +AAKNQVSASK  G
Sbjct: 241 VGQQFYRCPSYQATCGFFQWCKEPSMAAKNQVSASKVYG 272

[Close]

BLAST of Sgr029780 vs. ExPASy TrEMBL
Match: A0A0A0KVB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G062410 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 8.4e-84
Identity = 164/250 (65.60%), Postives = 183/250 (73.20%), Query Frame = 0


Query: 27  AAEARALAAKRRRIPNQASDPPKNAIPEVADKVSPNPDVEGLYIAALKGNPTFLSQISGG 86
           AAE  +L  K R +PN   D PKNA+ EV+ KV  N D  G YIA  KG+   LSQISG 
Sbjct: 11  AAEVVSLVKKVRNVPNPTIDLPKNAVAEVSHKVPLNADFLGTYIAPYKGSRA-LSQISGS 70

Query: 87  IANSRVKLVAAGNKGFISANPTAQSEGGGSCFKCGKLGHWARDCDASGGGGSFGTSGNDT 146
            A+S   +        I  N TAQSEG GSCFKCGKLGHWARDCDA GGGGSF +SGND 
Sbjct: 71  EASSDKNV-------SIYENTTAQSEGDGSCFKCGKLGHWARDCDAPGGGGSFSSSGNDM 130

Query: 147 SIAEKACPCGLGVCLLLTANTERNRGRKFYKCPVRQENGGCGFFEWCDNASGTNVMTYGS 206
           S+ +KACPCG G+C +LTANTERNRGRKFYKCPVRQENGGCGFFEWCD+AS  NV++YGS
Sbjct: 131 SVPDKACPCGSGICSVLTANTERNRGRKFYKCPVRQENGGCGFFEWCDSASVANVVSYGS 190

Query: 207 QNRASSSSFSDLPCPCGAGSCIILTAKTGENVGQQFYRCPSYQETCGFFQWCREPPIAAK 266
           QN   SSSFSDL CPCGAGSC ILTAKTG NVG+QFY CPS Q +C FF+WC EP +  K
Sbjct: 191 QN-PLSSSFSDLQCPCGAGSCKILTAKTGNNVGKQFYCCPSSQASCRFFRWCEEPSMETK 250

Query: 267 NQVSASKGIG 277
           NQ S  K  G
Sbjct: 251 NQESTPKVYG 251

[Close]

BLAST of Sgr029780 vs. ExPASy TrEMBL
Match: A0A6P3YZ85 (DNA-binding protein HEXBP-like isoform X1 OS=Ziziphus jujuba OX=326968 GN=LOC107405261 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.3e-76
Identity = 161/279 (57.71%), Postives = 192/279 (68.82%), Query Frame = 0


Query: 1   MRIEAKRNF-DFDLEDDDDEDFLSEVAAAEARALAAKRRRIP-NQASDPPKNAIPEVADK 60
           M+IEAK++F +   +DDDD+DFLS+VAA EA ALA KRR++  +Q +  P +    +  K
Sbjct: 1   MKIEAKKSFIEIQDDDDDDDDFLSQVAAVEAHALANKRRKVTLSQNAAVPNSRANHIQAK 60

Query: 61  VSPNPDVEGLYIAALKGNPTFLSQISGGIANSRVKLVAAGNKGFISANPTAQSEGGGSCF 120
              +  V+GLY AALKGN T   Q +      RVK+VA  N      +   +S  G SCF
Sbjct: 61  --DDAMVDGLYTAALKGNKTLNLQSTSSHPGRRVKVVATENDNVFGGD--HRSNDGNSCF 120

Query: 121 KCGKLGHWARDCDAS-GGGGSFGTSGNDTSIAEKACPCGLGVCLLLTANTERNRGRKFYK 180
           KCGK+GHWARDCDA+ GGGG FG    D SI EK CPCG G CL+LTANTE+NRGRKFYK
Sbjct: 121 KCGKVGHWARDCDATGGGGGQFGNYVGDPSIPEKTCPCGSGTCLVLTANTEKNRGRKFYK 180

Query: 181 CPVRQENGGCGFFEWCDNASGTNVMTYG--SQNRASSSSFSDLPCPCGAGSCIILTAKTG 240
           CP+RQENGGCGFFEW DNASG N M  G    N AS SS+ DL CPCGAG C+ILTAKTG
Sbjct: 181 CPIRQENGGCGFFEWVDNASGANFMAGGETQNNYASDSSYPDLQCPCGAGFCLILTAKTG 240

Query: 241 ENVGQQFYRCP-SYQETCGFFQWCREPPIAAKNQVSASK 274
           +NVG+QFYRCP S   +C FF+WC E   +A   VSASK
Sbjct: 241 KNVGRQFYRCPLSQGGSCNFFKWCNESTASAGLPVSASK 275

[Close]

BLAST of Sgr029780 vs. TAIR 10
Match: AT3G42860.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 190.7 bits (483), Expect = 4.3e-48
Identity = 109/260 (41.92%), Postives = 149/260 (57.31%), Query Frame = 0


Query: 16  DDDEDFLSEVAAAEARALAAKRRRIPNQASDPPKNAIPEVADKVSPNPDVEGLYIAALKG 75
           D+++DFL ++AA EA A AAKR R+         ++IP            EG Y+AALKG
Sbjct: 12  DEEDDFLLQLAAIEAEA-AAKRPRV---------SSIP------------EGPYMAALKG 71

Query: 76  NPTFLSQISGGIANSRVKLVAAGNKGFISANPTAQSEGGGSCFKCGKLGHWARDCDASGG 135
           + +   Q S     S+ + VA    GF       +S+GGG                    
Sbjct: 72  SKSDQWQQSPLNPASKSRSVAVTTGGF------QRSDGGG-------------------- 131

Query: 136 GGSFGTSGNDTSIAEKACPCGLGVCLLLTANTERNRGRKFYKCPVRQENGGCGFFEWCD- 195
               G +G +    EK+CPCG+G+CL+LT+NT +N GRKFYKCP R+ENGGCGFF+WCD 
Sbjct: 132 ----GVAG-EQDFPEKSCPCGVGICLILTSNTPKNPGRKFYKCPNREENGGCGFFQWCDA 191

Query: 196 -NASGTNVMTYGSQNRASSSSFSDLPCPCGAGSCIILTAKTGENVGQQFYRCPSYQETCG 255
             +SGT+  T  S    + + F D  CPCGAG C +LTAKTGENVG+QFYRCP ++ +CG
Sbjct: 192 VQSSGTSTTTSNSYGNGNDTKFPDHQCPCGAGLCRVLTAKTGENVGRQFYRCPVFEGSCG 218

Query: 256 FFQWCREPPIAAKNQVSASK 274
           FF+WC +  +++    S +K
Sbjct: 252 FFKWCNDNVVSSPTSYSVTK 218

[Close]

BLAST of Sgr029780 vs. TAIR 10
Match: AT1G30540.1 (Actin-like ATPase superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 3.4e-13
Identity = 39/76 (51.32%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 655 HRNGEIWEFEREMSG----GTGGVEDVILGIDGGTTSTICVCVPFLQPQSLHLPDPLPLL 714
           H NG + + E +  G      G V  VILG+DGG TST+CVCVPF        PDPLP+L
Sbjct: 5   HSNGNLRKLEADGGGEATEENGFVNGVILGLDGGATSTVCVCVPFFS-FGERFPDPLPIL 64

Query: 715 ARVEAGCSNHNSVGGT 727
            R  AGC+N NSVG T
Sbjct: 65  GRAVAGCTNRNSVGET 79

[Close]

BLAST of Sgr029780 vs. TAIR 10
Match: AT5G13920.1 (GRF zinc finger / Zinc knuckle protein )

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-07
Identity = 26/56 (46.43%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 208 NRASSSSFSDLP-----CPCGAGSCIILTAKTGENVGQQFYRCPSYQETCGFFQWC 259
           N     S++D P     CPCG G C I  A T EN G++FY+CP+ Q  C FF+WC
Sbjct: 22  NDCPLKSYTDDPPPAIQCPCGGGFCEIKVANTRENPGRKFYKCPTAQNCC-FFKWC 76

[Close]

BLAST of Sgr029780 vs. TAIR 10
Match: AT1G54930.1 (GRF zinc finger / Zinc knuckle protein )

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-07
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 210 ASSSSFSDLPCPCGAGSCIILTAKTGENVGQQFYRCPSYQETCGFFQWC 259
           A++ S  D+ CPC AG C  +T+KT +N  ++FY CPS    CG+F+WC
Sbjct: 30  AAAPSPPDIHCPCNAGPCNTVTSKTEKNPNRRFYTCPS----CGYFKWC 74

[Close]

BLAST of Sgr029780 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-05
Identity = 26/63 (41.27%), Postives = 33/63 (52.38%), Query Frame = 0


Query: 95  VAAGNKGFISANPTAQSEGGGSCFKCGKLGHWARDCDASGGGGSFGTSGNDTSIAEKAC- 154
           V A   G ++    +    GG+CF CG++GH A+DCD   GG SFG  G   S  E  C 
Sbjct: 74  VTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECY 133

Query: 155 PCG 157
            CG
Sbjct: 134 MCG 136

The following BLAST results are available for this feature:

BLAST of Sgr029780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136561.1	7.5e-127	81.52	DNA-binding protein HEXBP-like [Momordica charantia] >XP_022136562.1 DNA-binding...	[more]
KAG7015092.1	9.7e-127	81.65	DNA topoisomerase 3-alpha, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023552737.1	8.2e-126	80.58	cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022931285.1	1.4e-125	81.36	cold shock domain-containing protein 3-like [Cucurbita moschata]	[more]
KAG6577083.1	4.1e-125	80.94	DNA topoisomerase 3-alpha, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Sgr029780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9NG98	6.8e-06	25.16	DNA topoisomerase 3-alpha OS=Drosophila melanogaster OX=7227 GN=Top3alpha PE=2 S...	[more]
C7J0A2	1.5e-05	36.26	DNA topoisomerase 3-alpha OS=Oryza sativa subsp. japonica OX=39947 GN=TOP3A PE=3...	[more]
Q9LVP1	3.4e-05	36.27	DNA topoisomerase 3-alpha OS=Arabidopsis thaliana OX=3702 GN=TOP3A PE=1 SV=1	[more]
Q94C69	1.7e-04	41.27	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]

BLAST of Sgr029780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C4N6	3.6e-127	81.52	DNA-binding protein HEXBP-like OS=Momordica charantia OX=3673 GN=LOC111008238 PE...	[more]
A0A6J1EZ11	6.8e-126	81.36	cold shock domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JBZ0	3.4e-125	81.00	cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A0A0KVB6	8.4e-84	65.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G062410 PE=4 SV=1	[more]
A0A6P3YZ85	1.3e-76	57.71	DNA-binding protein HEXBP-like isoform X1 OS=Ziziphus jujuba OX=326968 GN=LOC107...	[more]

BLAST of Sgr029780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42860.1	4.3e-48	41.92	zinc knuckle (CCHC-type) family protein	[more]
AT1G30540.1	3.4e-13	51.32	Actin-like ATPase superfamily protein	[more]
AT5G13920.1	1.7e-07	46.43	GRF zinc finger / Zinc knuckle protein	[more]
AT1G54930.1	2.2e-07	46.94	GRF zinc finger / Zinc knuckle protein	[more]
AT2G17870.1	1.2e-05	41.27	cold shock domain protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 116..132 e-value: 5.7E-5 score: 32.5
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 116..131 e-value: 4.9E-7 score: 29.5
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 117..130 score: 10.608721
None	No IPR available	GENE3D	3.30.420.40		coord: 676..729 e-value: 2.7E-5 score: 26.6
None	No IPR available	GENE3D	4.10.60.10		coord: 109..152 e-value: 1.0E-6 score: 30.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 353..375
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 353..367
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 425..462
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 443..462
None	No IPR available	PANTHER	PTHR33680	OS07G0190500 PROTEIN	coord: 108..212 coord: 208..264
None	No IPR available	PANTHER	PTHR33680:SF4	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 108..212 coord: 208..264
IPR010666	Zinc finger, GRF-type	PFAM	PF06839	zf-GRF	coord: 152..195 e-value: 5.7E-15 score: 55.1 coord: 219..260 e-value: 1.5E-14 score: 53.7
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 97..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr029780.1	Sgr029780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding