Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCTGGGTTTGACTTGGCTGTGACTGGGGCTCTGTTGCAGCTCTGTGTTTCTTCTTCTCAAATCGATTCTTTCGCTTGCTTCTTGGTTCTCTGCTGCTGTATGATTCTCTGCTGTTTCAAGCAGAGGTTGAATCTGGTGTTCCCATCTGTTTCGATGCGTTTGAGACCGAAGAGGTTTGTGGGTTTTTTTACCTTTTCCTTTTCTTTTTACTGTTTCGATCCATTTTGTGTTCTGGGTAAGGTTTGAATCTGATTTTTGTTTCTGGGTTTCTTTCAGGACTTGTTCTGGAGTGAAGTGCTTTGGAGCTTTTCATATAAAACGTTTCTCATTTCTTCTTTTGCTTTTGAGAGGGGGTTTCACCTGA
mRNA sequence
ATGTCGGCTGGGTTTGACTTGGCTGTGACTGGGGCTCTGTTGCAGCTCTGTGTTTCTTCTTCTCAAATCGATTCTTTCGCTTGCTTCTTGGTTCTCTGCTGCTGTATGATTCTCTGCTGTTTCAAGCAGAGGTTGAATCTGGTGTTCCCATCTGTTTCGATGCGTTTGAGACCGAAGAGGACTTGTTCTGGAGTGAAGTGCTTTGGAGCTTTTCATATAAAACGTTTCTCATTTCTTCTTTTGCTTTTGAGAGGGGGTTTCACCTGA
Coding sequence (CDS)
ATGTCGGCTGGGTTTGACTTGGCTGTGACTGGGGCTCTGTTGCAGCTCTGTGTTTCTTCTTCTCAAATCGATTCTTTCGCTTGCTTCTTGGTTCTCTGCTGCTGTATGATTCTCTGCTGTTTCAAGCAGAGGTTGAATCTGGTGTTCCCATCTGTTTCGATGCGTTTGAGACCGAAGAGGACTTGTTCTGGAGTGAAGTGCTTTGGAGCTTTTCATATAAAACGTTTCTCATTTCTTCTTTTGCTTTTGAGAGGGGGTTTCACCTGA
Protein sequence
MSAGFDLAVTGALLQLCVSSSQIDSFACFLVLCCCMILCCFKQRLNLVFPSVSMRLRPKRTCSGVKCFGAFHIKRFSFLLLLLRGGFT
Homology
BLAST of Sgr025990 vs. NCBI nr
Match:
KAG6579195.1 (hypothetical protein SDJN03_23643, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016707.1 hypothetical protein SDJN02_21817 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 129.0 bits (323), Expect = 2.0e-26
Identity = 71/90 (78.89%), Postives = 74/90 (82.22%), Query Frame = 0
Query: 1 MSAGFDLAVTGALLQLCVSSSQIDSFACFLVLCCCMILCCFKQRLNLVFPSVSMRLRPKR 60
MSAGFDLAV GALLQLC SSS + L+L CCMILCCFKQ LNLVFPSVSMR RPKR
Sbjct: 1 MSAGFDLAVIGALLQLCFSSS-----SSSLLLSCCMILCCFKQSLNLVFPSVSMRFRPKR 60
Query: 61 TCSGVKCFGAFHIKRFSFLLLLL--RGGFT 89
TCSGVKCFGAFHIKRFS +LLL RGGFT
Sbjct: 61 TCSGVKCFGAFHIKRFSSFILLLFRRGGFT 85
BLAST of Sgr025990 vs. NCBI nr
Match:
KAG2664121.1 (hypothetical protein I3760_16G064500 [Carya illinoinensis] >KAG6624987.1 hypothetical protein CIPAW_16G064600 [Carya illinoinensis])
HSP 1 Score: 113.2 bits (282), Expect = 1.1e-21
Identity = 61/88 (69.32%), Postives = 69/88 (78.41%), Query Frame = 0
Query: 1 MSAGFDLAVTGALLQLCVSSSQIDSFACFLVLCCCMILCCFKQRLNLVFPSVSMRLRPKR 60
MSAGFDL + GALL+L + S+ S A F + CCM+LC F+QRLNLV+ SVSMRLRPKR
Sbjct: 1 MSAGFDLVLIGALLKLWLFSAATFS-ALFAIFFCCMLLCFFRQRLNLVYCSVSMRLRPKR 60
Query: 61 TCSGVKCFGAFHIKRFSFLLLLLRGGFT 89
TCSGVKCFGAFHIKRF L L LRGG T
Sbjct: 61 TCSGVKCFGAFHIKRFFSLFLFLRGGLT 87
BLAST of Sgr025990 vs. NCBI nr
Match:
KAG6672509.1 (hypothetical protein I3842_16G060900 [Carya illinoinensis] >KAG7941769.1 hypothetical protein I3843_16G063000 [Carya illinoinensis])
HSP 1 Score: 112.1 bits (279), Expect = 2.5e-21
Identity = 61/88 (69.32%), Postives = 68/88 (77.27%), Query Frame = 0
Query: 1 MSAGFDLAVTGALLQLCVSSSQIDSFACFLVLCCCMILCCFKQRLNLVFPSVSMRLRPKR 60
MSAGFDL + GALL+L + S S A F + CCM+LC F+QRLNLV+ SVSMRLRPKR
Sbjct: 1 MSAGFDLVLIGALLKLWLFSVATFS-ALFAIFFCCMLLCFFRQRLNLVYCSVSMRLRPKR 60
Query: 61 TCSGVKCFGAFHIKRFSFLLLLLRGGFT 89
TCSGVKCFGAFHIKRF L L LRGG T
Sbjct: 61 TCSGVKCFGAFHIKRFFSLFLFLRGGLT 87
BLAST of Sgr025990 vs. NCBI nr
Match:
KAG6626895.1 (hypothetical protein CIPAW_15G084200 [Carya illinoinensis] >KAG6626896.1 hypothetical protein CIPAW_15G084200 [Carya illinoinensis] >KAG6626897.1 hypothetical protein CIPAW_15G084200 [Carya illinoinensis])
HSP 1 Score: 109.4 bits (272), Expect = 1.6e-20
Identity = 61/88 (69.32%), Postives = 65/88 (73.86%), Query Frame = 0
Query: 1 MSAGFDLAVTGALLQLCVSSSQIDSFACFLVLCCCMILCCFKQRLNLVFPSVSMRLRPKR 60
MSA F+L + GALLQLCV + S LV C M LCCF+QRLNLV SVSMRLR KR
Sbjct: 1 MSAEFNLLLIGALLQLCVLAISTLSALFALVFCWRMFLCCFRQRLNLVHRSVSMRLRSKR 60
Query: 61 TCSGVKCFGAFHIKRFSFLLLLLRGGFT 89
TCSGVKCFGAFHIKRFSFL L LR G T
Sbjct: 61 TCSGVKCFGAFHIKRFSFLFLFLRVGLT 88
BLAST of Sgr025990 vs. NCBI nr
Match:
KAG2666761.1 (hypothetical protein I3760_15G079300 [Carya illinoinensis] >KAG6675059.1 hypothetical protein I3842_15G080600 [Carya illinoinensis])
HSP 1 Score: 109.4 bits (272), Expect = 1.6e-20
Identity = 61/88 (69.32%), Postives = 65/88 (73.86%), Query Frame = 0
Query: 1 MSAGFDLAVTGALLQLCVSSSQIDSFACFLVLCCCMILCCFKQRLNLVFPSVSMRLRPKR 60
MSA F+L + GALLQLCV + S LV C M LCCF+QRLNLV SVSMRLR KR
Sbjct: 125 MSAEFNLLLIGALLQLCVLAISTLSALFALVFCWRMFLCCFRQRLNLVHRSVSMRLRSKR 184
Query: 61 TCSGVKCFGAFHIKRFSFLLLLLRGGFT 89
TCSGVKCFGAFHIKRFSFL L LR G T
Sbjct: 185 TCSGVKCFGAFHIKRFSFLFLFLRVGLT 212
BLAST of Sgr025990 vs. ExPASy TrEMBL
Match:
A0A0A0KAV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G039145 PE=4 SV=1)
HSP 1 Score: 109.0 bits (271), Expect = 1.0e-20
Identity = 64/89 (71.91%), Postives = 66/89 (74.16%), Query Frame = 0
Query: 1 MSAGFDLAVTGALLQLCVSSSQIDSFACFLVLCCCMILCCFKQRLNLVFPSVSMRLRPKR 60
MSAGFDLAV GALLQLC SS +IL FKQ LNL+F SVSMRLRPKR
Sbjct: 1 MSAGFDLAVIGALLQLCFSS-------------LLLILGSFKQSLNLLFSSVSMRLRPKR 60
Query: 61 TCSGVKCFGAFHIKRFSFLLLLLR-GGFT 89
TCSGVKCFGAFHIKRFSFLLLL R GGFT
Sbjct: 61 TCSGVKCFGAFHIKRFSFLLLLFRKGGFT 76
BLAST of Sgr025990 vs. ExPASy TrEMBL
Match:
A0A314XMT5 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_11113 PE=4 SV=1)
HSP 1 Score: 99.8 bits (247), Expect = 6.2e-18
Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 0
Query: 1 MSAGFDLAVTGALLQLCVSSSQIDSFACFLVLCCCMILCCFKQRLNLVFPSVSMRLRPKR 60
MSA F LAV GALL+L + +S SF+ +L + C M+LCCF QRLN V SVSM LRPKR
Sbjct: 1 MSASFALAVIGALLKLWILTS--SSFSAYLAI-CFMLLCCFWQRLNPVISSVSMSLRPKR 60
Query: 61 TCSGVKCFGAFHIKRFSFLLLLLRGGFT 89
TCSG++ FGAFHIKRFSFL L LRG T
Sbjct: 61 TCSGLQYFGAFHIKRFSFLFLFLRGDLT 85
BLAST of Sgr025990 vs. ExPASy TrEMBL
Match:
A0A314YXV8 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_27402 PE=4 SV=1)
HSP 1 Score: 99.8 bits (247), Expect = 6.2e-18
Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 0
Query: 1 MSAGFDLAVTGALLQLCVSSSQIDSFACFLVLCCCMILCCFKQRLNLVFPSVSMRLRPKR 60
MSA F LAV GALL+LC+ +S SF+ +L + C M+LC F QRLN V SVSM LRPKR
Sbjct: 1 MSASFALAVIGALLKLCILTS--SSFSAYLAI-CFMLLCWFWQRLNPVISSVSMSLRPKR 60
Query: 61 TCSGVKCFGAFHIKRFSFLLLLLRGGFT 89
TCSG++ FGAFHIKRFSFL L LRG T
Sbjct: 61 TCSGLQYFGAFHIKRFSFLFLFLRGDLT 85
BLAST of Sgr025990 vs. ExPASy TrEMBL
Match:
A0A2C9UKK3 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G101800 PE=4 SV=1)
HSP 1 Score: 99.8 bits (247), Expect = 6.2e-18
Identity = 52/88 (59.09%), Postives = 62/88 (70.45%), Query Frame = 0
Query: 1 MSAGFDLAVTGALLQLCVSSSQIDSFACFLVLCCCMILCCFKQRLNLVFPSVSMRLRPKR 60
MSA FDLA+ GALL+LC S + C M+LCCF+Q L+L FP++SMRLR KR
Sbjct: 1 MSACFDLALIGALLKLCFIPSASSTLCVCCGSLCYMLLCCFQQSLHLGFPAISMRLRSKR 60
Query: 61 TCSGVKCFGAFHIKRFSFLLLLLRGGFT 89
TCSGV+CFG FHIKRF +L L LRG T
Sbjct: 61 TCSGVECFGGFHIKRFFYLFLYLRGALT 88
BLAST of Sgr025990 vs. ExPASy TrEMBL
Match:
A0A7J8T161 (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_000654 PE=4 SV=1)
HSP 1 Score: 99.4 bits (246), Expect = 8.1e-18
Identity = 56/89 (62.92%), Postives = 65/89 (73.03%), Query Frame = 0
Query: 1 MSAGFDLAVTGALLQLCVSSSQIDSFACFLVLCCCMILCCFKQRLNLVFPSVSMRLRPKR 60
MS FDLA+ GA LQLC SSS + F L + + LC ++QRLNLV PSVSMRLRPK+
Sbjct: 1 MSTEFDLALIGARLQLCFSSSTV--FCSHLFIKASLALCFYRQRLNLVLPSVSMRLRPKK 60
Query: 61 TCSGVKCFGAFHIK-RFSFLLLLLRGGFT 89
TCSGV CFG FHIK RF +LLL LRG +T
Sbjct: 61 TCSGVGCFGGFHIKQRFFYLLLFLRGAYT 87
BLAST of Sgr025990 vs. TAIR 10
Match:
AT1G68552.1 (conserved peptide upstream open reading frame 53 )
HSP 1 Score: 63.5 bits (153), Expect = 9.5e-11
Identity = 41/87 (47.13%), Postives = 52/87 (59.77%), Query Frame = 0
Query: 1 MSAGFDLAVTGALLQL---CVSSSQIDSFACFLVLCCCMILCCFKQRLNLVFPSVSMRLR 60
MSAGF+ V +L+ + SSS S + L + CC KQRL L PS+SMRLR
Sbjct: 1 MSAGFESTVILSLIHISSPISSSSSPSSSSLKSCLLNALHFCCNKQRLVLETPSLSMRLR 60
Query: 61 PKRTCSGVKCFGAFHIKRFSFLLLLLR 85
PKRTCS V+ FG FHIK+ F ++R
Sbjct: 61 PKRTCSSVEVFGGFHIKQQKFSFFIVR 87
BLAST of Sgr025990 vs. TAIR 10
Match:
AT1G25472.1 (conserved peptide upstream open reading frame 54 )
HSP 1 Score: 47.4 bits (111), Expect = 7.0e-06
Identity = 28/57 (49.12%), Postives = 34/57 (59.65%), Query Frame = 0
Query: 19 SSSQIDSFACFLVLCCCMILCCFKQRLNLVFPSVSMRLRPKRTCSGVKCFGAFHIKR 76
SSS + F L + C +QRL L PS+SM LR KRTCSGV+ FG FH K+
Sbjct: 26 SSSSVLFFGLSLTAVLNALRFCSEQRLILEVPSISMGLRLKRTCSGVEVFGGFHEKQ 82
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6579195.1 | 2.0e-26 | 78.89 | hypothetical protein SDJN03_23643, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG2664121.1 | 1.1e-21 | 69.32 | hypothetical protein I3760_16G064500 [Carya illinoinensis] >KAG6624987.1 hypothe... | [more] |
KAG6672509.1 | 2.5e-21 | 69.32 | hypothetical protein I3842_16G060900 [Carya illinoinensis] >KAG7941769.1 hypothe... | [more] |
KAG6626895.1 | 1.6e-20 | 69.32 | hypothetical protein CIPAW_15G084200 [Carya illinoinensis] >KAG6626896.1 hypothe... | [more] |
KAG2666761.1 | 1.6e-20 | 69.32 | hypothetical protein I3760_15G079300 [Carya illinoinensis] >KAG6675059.1 hypothe... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KAV1 | 1.0e-20 | 71.91 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G039145 PE=4 SV=1 | [more] |
A0A314XMT5 | 6.2e-18 | 64.77 | Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_111... | [more] |
A0A314YXV8 | 6.2e-18 | 64.77 | Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_274... | [more] |
A0A2C9UKK3 | 6.2e-18 | 59.09 | Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G101800 PE=4 SV=... | [more] |
A0A7J8T161 | 8.1e-18 | 62.92 | Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_000654 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |
AT1G68552.1 | 9.5e-11 | 47.13 | conserved peptide upstream open reading frame 53 | [more] |
AT1G25472.1 | 7.0e-06 | 49.12 | conserved peptide upstream open reading frame 54 | [more] |