Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCTACCAACGCTGCCCAGAGATATGATCGATCCTTGCTTGAGTGGGATCATTACACTAGCAGCGTACTTCATCCCCATGAAAACTGCCTTCACGTTTACATCAAACACCTTCTCAAACTCCGATACATCGATGTTGCGAATATCAGAGGAGGGTGTACCTGAGATCCCTGCATTGTTCACCATTATGTCAAGTGTACCGAATTTGCTCACTGTCAAGTCCACTGCACGGCGAACATCATCTTCCACTCTAACATCACAGTGTAAATAA
mRNA sequence
ATGACGCTACCAACGCTGCCCAGAGATATGATCGATCCTTGCTTGAGTGGGATCATTACACTAGCAGCGTACTTCATCCCCATGAAAACTGCCTTCACGTTTACATCAAACACCTTCTCAAACTCCGATACATCGATGTTGCGAATATCAGAGGAGGGTGTACCTGAGATCCCTGCATTGTTCACCATTATGTCAAGTGTACCGAATTTGCTCACTGTCAAGTCCACTGCACGGCGAACATCATCTTCCACTCTAACATCACAGTGTAAATAA
Coding sequence (CDS)
ATGACGCTACCAACGCTGCCCAGAGATATGATCGATCCTTGCTTGAGTGGGATCATTACACTAGCAGCGTACTTCATCCCCATGAAAACTGCCTTCACGTTTACATCAAACACCTTCTCAAACTCCGATACATCGATGTTGCGAATATCAGAGGAGGGTGTACCTGAGATCCCTGCATTGTTCACCATTATGTCAAGTGTACCGAATTTGCTCACTGTCAAGTCCACTGCACGGCGAACATCATCTTCCACTCTAACATCACAGTGTAAATAA
Protein sequence
MTLPTLPRDMIDPCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTSMLRISEEGVPEIPALFTIMSSVPNLLTVKSTARRTSSSTLTSQCK
Homology
BLAST of Sgr025910 vs. NCBI nr
Match:
GER27739.1 (nucleic acid-binding [Striga asiatica])
HSP 1 Score: 78.6 bits (192), Expect = 3.1e-11
Identity = 50/81 (61.73%), Postives = 53/81 (65.43%), Query Frame = 0
Query: 9 DMIDPCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTSMLRISEEGV-PEIPALFTIMSSV 68
D IDP GI+ AA F+P KT TFT NT SNS TS R S V P PALFTI S
Sbjct: 2 DTIDPLPLGIMMRAACFVPKKTPLTFTPNTRSNSATSNSRTSRHAVGPSTPALFTITSRP 61
Query: 69 PNLLTVKSTARRTSSSTLTSQ 89
PNL T STARRTSSST+TSQ
Sbjct: 62 PNLSTAWSTARRTSSSTVTSQ 82
BLAST of Sgr025910 vs. NCBI nr
Match:
KAB8094131.1 (hypothetical protein EE612_021198 [Oryza sativa] >BAS86998.1 Os03g0810850 [Oryza sativa Japonica Group])
HSP 1 Score: 77.4 bits (189), Expect = 7.0e-11
Identity = 50/88 (56.82%), Postives = 55/88 (62.50%), Query Frame = 0
Query: 1 MTLPTLPRDMIDPCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTSMLRISEEGVPEIPAL 60
MTL TLP +M+DP L GI+ AA FIP T S TF S+ SM RIS P PAL
Sbjct: 1 MTLETLPNEMMDPFLLGIMMRAACFIPWNTPTKLMSITFLTSEKSMFRISVIFWPVKPAL 60
Query: 61 FTIMSSVPNLLTVKSTARRTSSSTLTSQ 89
T+MS VPN V STAR TSSST TSQ
Sbjct: 61 LTMMSRVPNFSAVASTARATSSSTETSQ 88
BLAST of Sgr025910 vs. NCBI nr
Match:
BAU02529.1 (hypothetical protein VIGAN_11207700 [Vigna angularis var. angularis])
HSP 1 Score: 58.5 bits (140), Expect = 3.3e-05
Identity = 40/77 (51.95%), Postives = 46/77 (59.74%), Query Frame = 0
Query: 13 PCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTSMLRISEEGVPEIPALFTIMSSVPNLLT 72
P L+GIITLAA F+P FT T SNS TS+ R+ + + ALFTIMSS P L T
Sbjct: 3 PFLAGIITLAACFVPKNGPIRFTLTTRSNSATSLSRMLGFSLSIVAALFTIMSSFPYLDT 62
Query: 73 VKSTARRTSSSTLTSQC 90
TA TS S TSQC
Sbjct: 63 AMFTAFSTSFSLDTSQC 79
BLAST of Sgr025910 vs. NCBI nr
Match:
RDX62345.1 (hypothetical protein CR513_59335, partial [Mucuna pruriens])
HSP 1 Score: 57.4 bits (137), Expect = 7.5e-05
Identity = 44/91 (48.35%), Postives = 49/91 (53.85%), Query Frame = 0
Query: 1 MTLPTLPRDMIDPCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTS--MLRISEEGVPEIP 60
MT TL ++ P GII AA FIP FTFT T SNS S + + + P P
Sbjct: 1 MTPATLAVEITHPTPLGIIARAACFIPNAVPFTFTRITRSNSSGSKFTMLLFLDWFPSTP 60
Query: 61 ALFTIMSSVPNLLTVKSTARRTSSSTLTSQC 90
AL IMSS P TV T TSSSTLTSQC
Sbjct: 61 ALLNIMSSCPYRETVDLTRFSTSSSTLTSQC 91
BLAST of Sgr025910 vs. ExPASy TrEMBL
Match:
A0A5A7P4T2 (Nucleic acid-binding OS=Striga asiatica OX=4170 GN=STAS_03472 PE=4 SV=1)
HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 50/81 (61.73%), Postives = 53/81 (65.43%), Query Frame = 0
Query: 9 DMIDPCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTSMLRISEEGV-PEIPALFTIMSSV 68
D IDP GI+ AA F+P KT TFT NT SNS TS R S V P PALFTI S
Sbjct: 2 DTIDPLPLGIMMRAACFVPKKTPLTFTPNTRSNSATSNSRTSRHAVGPSTPALFTITSRP 61
Query: 69 PNLLTVKSTARRTSSSTLTSQ 89
PNL T STARRTSSST+TSQ
Sbjct: 62 PNLSTAWSTARRTSSSTVTSQ 82
BLAST of Sgr025910 vs. ExPASy TrEMBL
Match:
A0A0P0W4K2 (Os03g0810850 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0810850 PE=4 SV=1)
HSP 1 Score: 77.4 bits (189), Expect = 3.4e-11
Identity = 50/88 (56.82%), Postives = 55/88 (62.50%), Query Frame = 0
Query: 1 MTLPTLPRDMIDPCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTSMLRISEEGVPEIPAL 60
MTL TLP +M+DP L GI+ AA FIP T S TF S+ SM RIS P PAL
Sbjct: 1 MTLETLPNEMMDPFLLGIMMRAACFIPWNTPTKLMSITFLTSEKSMFRISVIFWPVKPAL 60
Query: 61 FTIMSSVPNLLTVKSTARRTSSSTLTSQ 89
T+MS VPN V STAR TSSST TSQ
Sbjct: 61 LTMMSRVPNFSAVASTARATSSSTETSQ 88
BLAST of Sgr025910 vs. ExPASy TrEMBL
Match:
J3LU13 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)
HSP 1 Score: 76.3 bits (186), Expect = 7.5e-11
Identity = 48/88 (54.55%), Postives = 57/88 (64.77%), Query Frame = 0
Query: 1 MTLPTLPRDMIDPCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTSMLRISEEGVPEIPAL 60
MTL TL +M++P L GI+T AA FIP T S TF NS S RIS +P +PAL
Sbjct: 1 MTLATLANEMMEPLLFGIMTRAACFIPWNTPTRLMSITFLNSAKSTFRISVILLPVMPAL 60
Query: 61 FTIMSSVPNLLTVKSTARRTSSSTLTSQ 89
T++S VPN V STAR TSSST+TSQ
Sbjct: 61 LTMISRVPNFSAVASTARLTSSSTVTSQ 88
BLAST of Sgr025910 vs. ExPASy TrEMBL
Match:
A0A0S3TC37 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.11G207700 PE=4 SV=1)
HSP 1 Score: 58.5 bits (140), Expect = 1.6e-05
Identity = 40/77 (51.95%), Postives = 46/77 (59.74%), Query Frame = 0
Query: 13 PCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTSMLRISEEGVPEIPALFTIMSSVPNLLT 72
P L+GIITLAA F+P FT T SNS TS+ R+ + + ALFTIMSS P L T
Sbjct: 3 PFLAGIITLAACFVPKNGPIRFTLTTRSNSATSLSRMLGFSLSIVAALFTIMSSFPYLDT 62
Query: 73 VKSTARRTSSSTLTSQC 90
TA TS S TSQC
Sbjct: 63 AMFTAFSTSFSLDTSQC 79
BLAST of Sgr025910 vs. ExPASy TrEMBL
Match:
A0A371E8I3 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_59335 PE=4 SV=1)
HSP 1 Score: 57.4 bits (137), Expect = 3.6e-05
Identity = 44/91 (48.35%), Postives = 49/91 (53.85%), Query Frame = 0
Query: 1 MTLPTLPRDMIDPCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTS--MLRISEEGVPEIP 60
MT TL ++ P GII AA FIP FTFT T SNS S + + + P P
Sbjct: 1 MTPATLAVEITHPTPLGIIARAACFIPNAVPFTFTRITRSNSSGSKFTMLLFLDWFPSTP 60
Query: 61 ALFTIMSSVPNLLTVKSTARRTSSSTLTSQC 90
AL IMSS P TV T TSSSTLTSQC
Sbjct: 61 ALLNIMSSCPYRETVDLTRFSTSSSTLTSQC 91
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
GER27739.1 | 3.1e-11 | 61.73 | nucleic acid-binding [Striga asiatica] | [more] |
KAB8094131.1 | 7.0e-11 | 56.82 | hypothetical protein EE612_021198 [Oryza sativa] >BAS86998.1 Os03g0810850 [Oryza... | [more] |
BAU02529.1 | 3.3e-05 | 51.95 | hypothetical protein VIGAN_11207700 [Vigna angularis var. angularis] | [more] |
RDX62345.1 | 7.5e-05 | 48.35 | hypothetical protein CR513_59335, partial [Mucuna pruriens] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7P4T2 | 1.5e-11 | 61.73 | Nucleic acid-binding OS=Striga asiatica OX=4170 GN=STAS_03472 PE=4 SV=1 | [more] |
A0A0P0W4K2 | 3.4e-11 | 56.82 | Os03g0810850 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0810850 PE... | [more] |
J3LU13 | 7.5e-11 | 54.55 | Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1 | [more] |
A0A0S3TC37 | 1.6e-05 | 51.95 | Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.11G... | [more] |
A0A371E8I3 | 3.6e-05 | 48.35 | Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_59335 P... | [more] |
Match Name | E-value | Identity | Description | |