Sgr025910 (gene) Monk fruit (Qingpiguo) v1

Overview
NameSgr025910
Typegene
OrganismSiraitia grosvenorii (Monk fruit (Qingpiguo) v1)
DescriptionNucleic acid-binding
Locationtig00153016: 1637671 .. 1637943 (+)
RNA-Seq ExpressionSgr025910
SyntenySgr025910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCTACCAACGCTGCCCAGAGATATGATCGATCCTTGCTTGAGTGGGATCATTACACTAGCAGCGTACTTCATCCCCATGAAAACTGCCTTCACGTTTACATCAAACACCTTCTCAAACTCCGATACATCGATGTTGCGAATATCAGAGGAGGGTGTACCTGAGATCCCTGCATTGTTCACCATTATGTCAAGTGTACCGAATTTGCTCACTGTCAAGTCCACTGCACGGCGAACATCATCTTCCACTCTAACATCACAGTGTAAATAA

mRNA sequence

ATGACGCTACCAACGCTGCCCAGAGATATGATCGATCCTTGCTTGAGTGGGATCATTACACTAGCAGCGTACTTCATCCCCATGAAAACTGCCTTCACGTTTACATCAAACACCTTCTCAAACTCCGATACATCGATGTTGCGAATATCAGAGGAGGGTGTACCTGAGATCCCTGCATTGTTCACCATTATGTCAAGTGTACCGAATTTGCTCACTGTCAAGTCCACTGCACGGCGAACATCATCTTCCACTCTAACATCACAGTGTAAATAA

Coding sequence (CDS)

ATGACGCTACCAACGCTGCCCAGAGATATGATCGATCCTTGCTTGAGTGGGATCATTACACTAGCAGCGTACTTCATCCCCATGAAAACTGCCTTCACGTTTACATCAAACACCTTCTCAAACTCCGATACATCGATGTTGCGAATATCAGAGGAGGGTGTACCTGAGATCCCTGCATTGTTCACCATTATGTCAAGTGTACCGAATTTGCTCACTGTCAAGTCCACTGCACGGCGAACATCATCTTCCACTCTAACATCACAGTGTAAATAA

Protein sequence

MTLPTLPRDMIDPCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTSMLRISEEGVPEIPALFTIMSSVPNLLTVKSTARRTSSSTLTSQCK
Homology
BLAST of Sgr025910 vs. NCBI nr
Match: GER27739.1 (nucleic acid-binding [Striga asiatica])

HSP 1 Score: 78.6 bits (192), Expect = 3.1e-11
Identity = 50/81 (61.73%), Postives = 53/81 (65.43%), Query Frame = 0

Query: 9  DMIDPCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTSMLRISEEGV-PEIPALFTIMSSV 68
          D IDP   GI+  AA F+P KT  TFT NT SNS TS  R S   V P  PALFTI S  
Sbjct: 2  DTIDPLPLGIMMRAACFVPKKTPLTFTPNTRSNSATSNSRTSRHAVGPSTPALFTITSRP 61

Query: 69 PNLLTVKSTARRTSSSTLTSQ 89
          PNL T  STARRTSSST+TSQ
Sbjct: 62 PNLSTAWSTARRTSSSTVTSQ 82

BLAST of Sgr025910 vs. NCBI nr
Match: KAB8094131.1 (hypothetical protein EE612_021198 [Oryza sativa] >BAS86998.1 Os03g0810850 [Oryza sativa Japonica Group])

HSP 1 Score: 77.4 bits (189), Expect = 7.0e-11
Identity = 50/88 (56.82%), Postives = 55/88 (62.50%), Query Frame = 0

Query: 1  MTLPTLPRDMIDPCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTSMLRISEEGVPEIPAL 60
          MTL TLP +M+DP L GI+  AA FIP  T     S TF  S+ SM RIS    P  PAL
Sbjct: 1  MTLETLPNEMMDPFLLGIMMRAACFIPWNTPTKLMSITFLTSEKSMFRISVIFWPVKPAL 60

Query: 61 FTIMSSVPNLLTVKSTARRTSSSTLTSQ 89
           T+MS VPN   V STAR TSSST TSQ
Sbjct: 61 LTMMSRVPNFSAVASTARATSSSTETSQ 88

BLAST of Sgr025910 vs. NCBI nr
Match: BAU02529.1 (hypothetical protein VIGAN_11207700 [Vigna angularis var. angularis])

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-05
Identity = 40/77 (51.95%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 13 PCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTSMLRISEEGVPEIPALFTIMSSVPNLLT 72
          P L+GIITLAA F+P      FT  T SNS TS+ R+    +  + ALFTIMSS P L T
Sbjct: 3  PFLAGIITLAACFVPKNGPIRFTLTTRSNSATSLSRMLGFSLSIVAALFTIMSSFPYLDT 62

Query: 73 VKSTARRTSSSTLTSQC 90
             TA  TS S  TSQC
Sbjct: 63 AMFTAFSTSFSLDTSQC 79

BLAST of Sgr025910 vs. NCBI nr
Match: RDX62345.1 (hypothetical protein CR513_59335, partial [Mucuna pruriens])

HSP 1 Score: 57.4 bits (137), Expect = 7.5e-05
Identity = 44/91 (48.35%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 1  MTLPTLPRDMIDPCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTS--MLRISEEGVPEIP 60
          MT  TL  ++  P   GII  AA FIP    FTFT  T SNS  S   + +  +  P  P
Sbjct: 1  MTPATLAVEITHPTPLGIIARAACFIPNAVPFTFTRITRSNSSGSKFTMLLFLDWFPSTP 60

Query: 61 ALFTIMSSVPNLLTVKSTARRTSSSTLTSQC 90
          AL  IMSS P   TV  T   TSSSTLTSQC
Sbjct: 61 ALLNIMSSCPYRETVDLTRFSTSSSTLTSQC 91

BLAST of Sgr025910 vs. ExPASy TrEMBL
Match: A0A5A7P4T2 (Nucleic acid-binding OS=Striga asiatica OX=4170 GN=STAS_03472 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 50/81 (61.73%), Postives = 53/81 (65.43%), Query Frame = 0

Query: 9  DMIDPCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTSMLRISEEGV-PEIPALFTIMSSV 68
          D IDP   GI+  AA F+P KT  TFT NT SNS TS  R S   V P  PALFTI S  
Sbjct: 2  DTIDPLPLGIMMRAACFVPKKTPLTFTPNTRSNSATSNSRTSRHAVGPSTPALFTITSRP 61

Query: 69 PNLLTVKSTARRTSSSTLTSQ 89
          PNL T  STARRTSSST+TSQ
Sbjct: 62 PNLSTAWSTARRTSSSTVTSQ 82

BLAST of Sgr025910 vs. ExPASy TrEMBL
Match: A0A0P0W4K2 (Os03g0810850 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0810850 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.4e-11
Identity = 50/88 (56.82%), Postives = 55/88 (62.50%), Query Frame = 0

Query: 1  MTLPTLPRDMIDPCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTSMLRISEEGVPEIPAL 60
          MTL TLP +M+DP L GI+  AA FIP  T     S TF  S+ SM RIS    P  PAL
Sbjct: 1  MTLETLPNEMMDPFLLGIMMRAACFIPWNTPTKLMSITFLTSEKSMFRISVIFWPVKPAL 60

Query: 61 FTIMSSVPNLLTVKSTARRTSSSTLTSQ 89
           T+MS VPN   V STAR TSSST TSQ
Sbjct: 61 LTMMSRVPNFSAVASTARATSSSTETSQ 88

BLAST of Sgr025910 vs. ExPASy TrEMBL
Match: J3LU13 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.5e-11
Identity = 48/88 (54.55%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 1  MTLPTLPRDMIDPCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTSMLRISEEGVPEIPAL 60
          MTL TL  +M++P L GI+T AA FIP  T     S TF NS  S  RIS   +P +PAL
Sbjct: 1  MTLATLANEMMEPLLFGIMTRAACFIPWNTPTRLMSITFLNSAKSTFRISVILLPVMPAL 60

Query: 61 FTIMSSVPNLLTVKSTARRTSSSTLTSQ 89
           T++S VPN   V STAR TSSST+TSQ
Sbjct: 61 LTMISRVPNFSAVASTARLTSSSTVTSQ 88

BLAST of Sgr025910 vs. ExPASy TrEMBL
Match: A0A0S3TC37 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.11G207700 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-05
Identity = 40/77 (51.95%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 13 PCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTSMLRISEEGVPEIPALFTIMSSVPNLLT 72
          P L+GIITLAA F+P      FT  T SNS TS+ R+    +  + ALFTIMSS P L T
Sbjct: 3  PFLAGIITLAACFVPKNGPIRFTLTTRSNSATSLSRMLGFSLSIVAALFTIMSSFPYLDT 62

Query: 73 VKSTARRTSSSTLTSQC 90
             TA  TS S  TSQC
Sbjct: 63 AMFTAFSTSFSLDTSQC 79

BLAST of Sgr025910 vs. ExPASy TrEMBL
Match: A0A371E8I3 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_59335 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.6e-05
Identity = 44/91 (48.35%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 1  MTLPTLPRDMIDPCLSGIITLAAYFIPMKTAFTFTSNTFSNSDTS--MLRISEEGVPEIP 60
          MT  TL  ++  P   GII  AA FIP    FTFT  T SNS  S   + +  +  P  P
Sbjct: 1  MTPATLAVEITHPTPLGIIARAACFIPNAVPFTFTRITRSNSSGSKFTMLLFLDWFPSTP 60

Query: 61 ALFTIMSSVPNLLTVKSTARRTSSSTLTSQC 90
          AL  IMSS P   TV  T   TSSSTLTSQC
Sbjct: 61 ALLNIMSSCPYRETVDLTRFSTSSSTLTSQC 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GER27739.13.1e-1161.73nucleic acid-binding [Striga asiatica][more]
KAB8094131.17.0e-1156.82hypothetical protein EE612_021198 [Oryza sativa] >BAS86998.1 Os03g0810850 [Oryza... [more]
BAU02529.13.3e-0551.95hypothetical protein VIGAN_11207700 [Vigna angularis var. angularis][more]
RDX62345.17.5e-0548.35hypothetical protein CR513_59335, partial [Mucuna pruriens][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7P4T21.5e-1161.73Nucleic acid-binding OS=Striga asiatica OX=4170 GN=STAS_03472 PE=4 SV=1[more]
A0A0P0W4K23.4e-1156.82Os03g0810850 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0810850 PE... [more]
J3LU137.5e-1154.55Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1[more]
A0A0S3TC371.6e-0551.95Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.11G... [more]
A0A371E8I33.6e-0548.35Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_59335 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sgr025910.1Sgr025910.1mRNA