Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGACCCGACGACGACGACGGTTTTCTCGCCGTCGCCGGAAGTCTCCTCCCATGCATTCCACAAATGGAAGCAGAAACAATCGGGCACGTCGATCCAAACAATCCCCTTCTCGTCCTCGTCGGATTTCGAGAAGATTCCGAATCGGGAAGTCTTGTTCGGGTCGAACATTACGGGCGACCCGCCTCGGATCATTTCGGATAATTTGAAAACCACCTGGTGGTCCGGTATGACGACGTGGTTTTCCGTTATGGCGAAGTCGTGGATCATCGTCGGCTGTCGGAGCGTGATGTCCACGTCACGTGACTTTCTCCCGCGCCGGTCAAACCGTAAATATTTCAAGTACGGTTTTTTTATCATGTTGTAGCTCAGACCGTGGAGATCGCCTGAGATGGGGTCCACCTTAGGGTGAGCAATCATGGGACAGTTGAGCTGATCGTTAAAGCTGAACCGTCCGATCGTTCCGAGATCTCCATCGTCCTTGATTTCAACGTGATACGGTAGATCATCTTCGGACAAGGCTAACAATCGACCATTGAAATAAACCAGGCCGGCGTTGGCGACGCCGGTCCCACGCGAGCCGTCAACAAGCCCAATCCCGGTTCGAGCCAGAAACACCGCGAGCCGAGCCAATCCCTGGTGACCATGCAGCTCGCCAATCGGCTTCGGAAATATGGCTCTCCCCAGAGCCGCTTCCTGCTCTAGCCGGCTCGTGCGAGTGTACCTACAGCTGTAACTGGCTTTGTTTTCGCCGTCCAATTTAACGGCGTGGACCATTCCGTCGCCGTCGAACAAGTGGTGTCCGCCCAACGGTGCATGCATGGGATTTGCGCCGTTCCGTAAGTAGACGCCACGTAAGCATGCAGGTATTTTTCCGACGACCTCGAGGTCGTGGCGGACCGGAAACTCGGGGACCGGGGAGAAATTGCCGGAAATCTGAACCGCCGGGTCGACCGTCTTCGGCAACTTATGGTTCTGCTCGAATGCCAGTATGAGCGACGACTCCACCGCGTCCAGCAGCGACCCCGCCAACTTCTGGAGCGGGTTCAGCCGACGTGGTGGACTCGTAGCTTCAGAGGCGGAGGCGGCGACACCGTTTTGGGCAGCGGTGGAGGTAATAGTTTGTGTTTTCTTGGGGGGGTTTCAATGGAGGGGTCCACCAGAACTTTGCAAGACGGGCTCCGGCAAAGTGGCGGCGACTGTAAACAGATTTGCATGA
mRNA sequence
ATGCATGACCCGACGACGACGACGGTTTTCTCGCCGTCGCCGGAAGTCTCCTCCCATGCATTCCACAAATGGAAGCAGAAACAATCGGGCACGTCGATCCAAACAATCCCCTTCTCGTCCTCGTCGGATTTCGAGAAGATTCCGAATCGGGAAGTCTTGTTCGGGTCGAACATTACGGGCGACCCGCCTCGGATCATTTCGGATAATTTGAAAACCACCTGGTGGTCCGGTATGACGACGTGGTTTTCCGTTATGGCGAAGTCGTGGATCATCGTCGGCTGTCGGAGCGTGATGTCCACGTCACGTGACTTTCTCCCGCGCCGGGTGAGCAATCATGGGACAGTTGAGCTGATCGTTAAAGCTGAACCGTCCGATCGTTCCGAGATCTCCATCGTCCTTGATTTCAACGCCGGCGTTGGCGACGCCGGTCCCACGCGAGCCGTCAACAAGCCCAATCCCGGTTCGAGCCAGAAACACCGCGAGCCGAGCCAATCCCTGCCGGCTCGTGCGAGTGTACCTACAGCTGTAACTGGCTTTGTTTTCGCCGTCCAATTTAACGGCGTGGACCATTCCGTCGCCGTCGAACAAGTGGTGTCCGCCCAACGGTGCATGCATGGGATTTGCGCCGTTCCTATGAGCGACGACTCCACCGCGTCCAGCAGCGACCCCGCCAACTTCTGGAGCGGGTTCAGCCGACGTGGTGGACTCGTAGCTTCAGAGGCGGAGGCGGCGACACCGTTTTGGGCAGCGGTGGAGGTAATAGTTTGTGTTTTCTTGGGGGGGTTTCAATGGAGGGGTCCACCAGAACTTTGCAAGACGGGCTCCGGCAAAGTGGCGGCGACTGTAAACAGATTTGCATGA
Coding sequence (CDS)
ATGCATGACCCGACGACGACGACGGTTTTCTCGCCGTCGCCGGAAGTCTCCTCCCATGCATTCCACAAATGGAAGCAGAAACAATCGGGCACGTCGATCCAAACAATCCCCTTCTCGTCCTCGTCGGATTTCGAGAAGATTCCGAATCGGGAAGTCTTGTTCGGGTCGAACATTACGGGCGACCCGCCTCGGATCATTTCGGATAATTTGAAAACCACCTGGTGGTCCGGTATGACGACGTGGTTTTCCGTTATGGCGAAGTCGTGGATCATCGTCGGCTGTCGGAGCGTGATGTCCACGTCACGTGACTTTCTCCCGCGCCGGGTGAGCAATCATGGGACAGTTGAGCTGATCGTTAAAGCTGAACCGTCCGATCGTTCCGAGATCTCCATCGTCCTTGATTTCAACGCCGGCGTTGGCGACGCCGGTCCCACGCGAGCCGTCAACAAGCCCAATCCCGGTTCGAGCCAGAAACACCGCGAGCCGAGCCAATCCCTGCCGGCTCGTGCGAGTGTACCTACAGCTGTAACTGGCTTTGTTTTCGCCGTCCAATTTAACGGCGTGGACCATTCCGTCGCCGTCGAACAAGTGGTGTCCGCCCAACGGTGCATGCATGGGATTTGCGCCGTTCCTATGAGCGACGACTCCACCGCGTCCAGCAGCGACCCCGCCAACTTCTGGAGCGGGTTCAGCCGACGTGGTGGACTCGTAGCTTCAGAGGCGGAGGCGGCGACACCGTTTTGGGCAGCGGTGGAGGTAATAGTTTGTGTTTTCTTGGGGGGGTTTCAATGGAGGGGTCCACCAGAACTTTGCAAGACGGGCTCCGGCAAAGTGGCGGCGACTGTAAACAGATTTGCATGA
Protein sequence
MHDPTTTTVFSPSPEVSSHAFHKWKQKQSGTSIQTIPFSSSSDFEKIPNREVLFGSNITGDPPRIISDNLKTTWWSGMTTWFSVMAKSWIIVGCRSVMSTSRDFLPRRVSNHGTVELIVKAEPSDRSEISIVLDFNAGVGDAGPTRAVNKPNPGSSQKHREPSQSLPARASVPTAVTGFVFAVQFNGVDHSVAVEQVVSAQRCMHGICAVPMSDDSTASSSDPANFWSGFSRRGGLVASEAEAATPFWAAVEVIVCVFLGGFQWRGPPELCKTGSGKVAATVNRFA
Homology
BLAST of Sgr025617 vs. NCBI nr
Match:
GER45101.1 (protein kinase superfamily protein [Striga asiatica])
HSP 1 Score: 130.2 bits (326), Expect = 2.9e-26
Identity = 103/304 (33.88%), Postives = 138/304 (45.39%), Query Frame = 0
Query: 1 MHDPTTTTVFSPSPEVSSHAFHKWKQKQSGTSIQTIPFSSSSDFEKIPNREVLFGSNITG 60
MH+P TTT S SSHAFH+WKQKQSGTS IP +S + PNR++LF S TG
Sbjct: 1 MHEPITTT---SSVSGSSHAFHRWKQKQSGTSTHLIPRASRAFLSSTPNRDILFSSYTTG 60
Query: 61 DPPRIISDNLKTTWWSGMTTWFSVMAKSWIIVGCRSVMSTSRDFLPR------------- 120
DPP ISD TT WSG TT FSVMAKS I+VG + +STS DF+P
Sbjct: 61 DPPHAISDRRNTTCWSGTTTKFSVMAKSCIMVGSVTGISTSSDFVPSLENLKYLSEHLAG 120
Query: 121 -----RVSNHGTVELIVKAEPSDRSEISI-------------------VLDFNAGVGDAG 180
RV +HG +L V+ +D E+++ V + AGVGDAG
Sbjct: 121 GRVELRVGDHGGRQLAVEVVAADGLEVAVEGDADVVGEVVLGHGEEAGVEEDEAGVGDAG 180
Query: 181 PTRAVNKPNPGSSQKHREPSQSLPA----------------------RASVPTAVTGFVF 240
V++ + + E + A V G
Sbjct: 181 AVSGVDEAEEAAGVEEGEAGDAGVAVELADGFGEDGAAEGELLGEAVGLGEAAGVGGGGG 240
Query: 241 AVQFNGVDHSVAVEQVVSAQRCMHGICAVPMSDDSTA---SSSDPANFWSGFSRRGGLVA 243
V+ +GVDH+V+VE+VV+ + G+ AV D + + D G GG VA
Sbjct: 241 VVEGDGVDHAVSVEEVVAGEGLEEGVGAVAEVDAADGVGDLAGDGEGVADGLLGDGGEVA 300
BLAST of Sgr025617 vs. NCBI nr
Match:
CAB3466536.1 (unnamed protein product [Digitaria exilis])
HSP 1 Score: 109.4 bits (272), Expect = 5.3e-20
Identity = 78/172 (45.35%), Postives = 91/172 (52.91%), Query Frame = 0
Query: 1 MHDPTTTTVFSPSPEVSSHAFHKWKQKQSGTSIQTIPFSSSSDFEKIPNREVLFGSNITG 60
M DPTTTT SP SSHAFHKWKQKQSGTS TI S + PN + S+ TG
Sbjct: 141 MQDPTTTT--SPVTS-SSHAFHKWKQKQSGTSTHTISDESPAYLGSTPNLDTFSLSSTTG 200
Query: 61 DPPRIISDNLKTTWWSGMTTWFSVMAKSWII-----VGCRSV--------MSTSRDFLPR 120
+PP IS +L TTWWSG TT FSVMAKSWII VG R V + D + +
Sbjct: 201 EPPFSISPSLNTTWWSGTTTKFSVMAKSWIILDLDVVGLRPVGKEVEVLEVGPLDDVVAQ 260
Query: 121 R-----------VSNHGTVELIVKAEPSDRSEISIVLDFNAGVGDAGPTRAV 149
R V +HG +L V+ EP R EI++ VGDA R V
Sbjct: 261 REELAGDGVKLGVRDHGGPKLAVEIEPPHRLEIAV-------VGDADMVRKV 302
BLAST of Sgr025617 vs. NCBI nr
Match:
CAB3462653.1 (unnamed protein product [Digitaria exilis])
HSP 1 Score: 109.0 bits (271), Expect = 6.9e-20
Identity = 83/205 (40.49%), Postives = 101/205 (49.27%), Query Frame = 0
Query: 1 MHDPTTTTVFSPSPEVSSHAFHKWKQKQSGTSIQTIPFSSSSDFEKIPNREVLFGSNITG 60
M DPTTTT SP SSHAFHKWKQKQSGTS TI S + PN + S+ TG
Sbjct: 141 MQDPTTTT--SPVTS-SSHAFHKWKQKQSGTSTHTISDESPAYLGSTPNLDTFSLSSTTG 200
Query: 61 DPPRIISDNLKTTWWSGMTTWFSVMAKSWII-----VGCRSV--------MSTSRDFLPR 120
+PP IS +L TTWWSG TT FSVMAKSWII VG R V + D + +
Sbjct: 201 EPPFSISPSLNTTWWSGTTTKFSVMAKSWIILDLDVVGFRPVGTEVEVLEVGPLDDVIAK 260
Query: 121 R-----------VSNHGTVELIVKAEPSDRSEISIVLD-------------------FNA 163
R V +HG +L V+ EP R EI++V D
Sbjct: 261 REELAGDGVKLGVRDHGGPKLPVEIEPPHRLEIAVVGDADMVRKVILRHGEEAAIKVHEP 320
BLAST of Sgr025617 vs. NCBI nr
Match:
GEV89608.1 (polyphenol oxidase I, chloroplastic-like [Tanacetum cinerariifolium])
HSP 1 Score: 68.6 bits (166), Expect = 1.0e-07
Identity = 40/73 (54.79%), Postives = 46/73 (63.01%), Query Frame = 0
Query: 1 MHDPTTTTVFSPSPEVSSHAFHKWKQKQSGTSIQTIPFSSSSDFEKIPNREVLFGSNITG 60
+HDP TT+ SP + SSHA+ +WKQ Q GTS IP S S IP R+ S TG
Sbjct: 37 IHDPITTS--SPVLD-SSHAYQRWKQNQCGTSTHLIPSPSESYLFTIPKRDTFSLSYSTG 96
Query: 61 DPPRIISDNLKTT 74
DPP IISDNLKTT
Sbjct: 97 DPPVIISDNLKTT 106
BLAST of Sgr025617 vs. ExPASy TrEMBL
Match:
A0A5A7QMI0 (Protein kinase superfamily protein OS=Striga asiatica OX=4170 GN=STAS_22027 PE=4 SV=1)
HSP 1 Score: 130.2 bits (326), Expect = 1.4e-26
Identity = 103/304 (33.88%), Postives = 138/304 (45.39%), Query Frame = 0
Query: 1 MHDPTTTTVFSPSPEVSSHAFHKWKQKQSGTSIQTIPFSSSSDFEKIPNREVLFGSNITG 60
MH+P TTT S SSHAFH+WKQKQSGTS IP +S + PNR++LF S TG
Sbjct: 1 MHEPITTT---SSVSGSSHAFHRWKQKQSGTSTHLIPRASRAFLSSTPNRDILFSSYTTG 60
Query: 61 DPPRIISDNLKTTWWSGMTTWFSVMAKSWIIVGCRSVMSTSRDFLPR------------- 120
DPP ISD TT WSG TT FSVMAKS I+VG + +STS DF+P
Sbjct: 61 DPPHAISDRRNTTCWSGTTTKFSVMAKSCIMVGSVTGISTSSDFVPSLENLKYLSEHLAG 120
Query: 121 -----RVSNHGTVELIVKAEPSDRSEISI-------------------VLDFNAGVGDAG 180
RV +HG +L V+ +D E+++ V + AGVGDAG
Sbjct: 121 GRVELRVGDHGGRQLAVEVVAADGLEVAVEGDADVVGEVVLGHGEEAGVEEDEAGVGDAG 180
Query: 181 PTRAVNKPNPGSSQKHREPSQSLPA----------------------RASVPTAVTGFVF 240
V++ + + E + A V G
Sbjct: 181 AVSGVDEAEEAAGVEEGEAGDAGVAVELADGFGEDGAAEGELLGEAVGLGEAAGVGGGGG 240
Query: 241 AVQFNGVDHSVAVEQVVSAQRCMHGICAVPMSDDSTA---SSSDPANFWSGFSRRGGLVA 243
V+ +GVDH+V+VE+VV+ + G+ AV D + + D G GG VA
Sbjct: 241 VVEGDGVDHAVSVEEVVAGEGLEEGVGAVAEVDAADGVGDLAGDGEGVADGLLGDGGEVA 300
BLAST of Sgr025617 vs. ExPASy TrEMBL
Match:
A0A2P2JSX0 (Uncharacterized protein MANES_15G122400 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)
HSP 1 Score: 56.6 bits (135), Expect = 2.0e-04
Identity = 31/54 (57.41%), Postives = 35/54 (64.81%), Query Frame = 0
Query: 1 MHDPTTTTVFSPSPEVSSHAFHKWKQKQSGTSIQTIPFSSSSDFEKIPNREVLF 55
M DP TTT S SSHAFHKWKQK SG S Q I F+S + F +IPN + LF
Sbjct: 7 MQDPITTT---SSDSGSSHAFHKWKQKVSGDSTQIISFASRAFFARIPNLDFLF 57
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
GER45101.1 | 2.9e-26 | 33.88 | protein kinase superfamily protein [Striga asiatica] | [more] |
CAB3466536.1 | 5.3e-20 | 45.35 | unnamed protein product [Digitaria exilis] | [more] |
CAB3462653.1 | 6.9e-20 | 40.49 | unnamed protein product [Digitaria exilis] | [more] |
GEV89608.1 | 1.0e-07 | 54.79 | polyphenol oxidase I, chloroplastic-like [Tanacetum cinerariifolium] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7QMI0 | 1.4e-26 | 33.88 | Protein kinase superfamily protein OS=Striga asiatica OX=4170 GN=STAS_22027 PE=4... | [more] |
A0A2P2JSX0 | 2.0e-04 | 57.41 | Uncharacterized protein MANES_15G122400 OS=Rhizophora mucronata OX=61149 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |