Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAGCCACAAGACGAGGTCCAAGCACTCCTCCCCTCCGGCCACCGGCGGCCATCTCGGCTAAGGATCCAGCTCCGGCGGAAGAAGCTGCCGACGGCCCGCCTTGGCGGCAAAAGGCGGCCGCGAGTGGTGGCGTTTTGGAGGTCAATTAAGGAGGTCCGAAGTAATTGGGCGATGAGGCTGCGGTGCGCTTGCATGGTGAAGAAGCTCAACCAGTTCTTCGGCAAAGAGATTGCGGCTGCCGGCGCCGGCTTCGACGCTTTCCAGAAAAGGCTTCTGATGGAGATCTCCTTCGCCGTGCCTCTCCTCGGTGCCTCCCTCTCTTTCCCTTTACCTTAA
mRNA sequence
ATGGCTCAGCCACAAGACGAGGTCCAAGCACTCCTCCCCTCCGGCCACCGGCGGCCATCTCGGCTAAGGATCCAGCTCCGGCGGAAGAAGCTGCCGACGGCCCGCCTTGGCGGCAAAAGGCGGCCGCGAGTGGTGGCGTTTTGGAGGTCAATTAAGGAGGTCCGAAGTAATTGGGCGATGAGGCTGCGGTGCGCTTGCATGGTGAAGAAGCTCAACCAGTTCTTCGGCAAAGAGATTGCGGCTGCCGGCGCCGGCTTCGACGCTTTCCAGAAAAGGCTTCTGATGGAGATCTCCTTCGCCGTGCCTCTCCTCGGTGCCTCCCTCTCTTTCCCTTTACCTTAA
Coding sequence (CDS)
ATGGCTCAGCCACAAGACGAGGTCCAAGCACTCCTCCCCTCCGGCCACCGGCGGCCATCTCGGCTAAGGATCCAGCTCCGGCGGAAGAAGCTGCCGACGGCCCGCCTTGGCGGCAAAAGGCGGCCGCGAGTGGTGGCGTTTTGGAGGTCAATTAAGGAGGTCCGAAGTAATTGGGCGATGAGGCTGCGGTGCGCTTGCATGGTGAAGAAGCTCAACCAGTTCTTCGGCAAAGAGATTGCGGCTGCCGGCGCCGGCTTCGACGCTTTCCAGAAAAGGCTTCTGATGGAGATCTCCTTCGCCGTGCCTCTCCTCGGTGCCTCCCTCTCTTTCCCTTTACCTTAA
Protein sequence
MAQPQDEVQALLPSGHRRPSRLRIQLRRKKLPTARLGGKRRPRVVAFWRSIKEVRSNWAMRLRCACMVKKLNQFFGKEIAAAGAGFDAFQKRLLMEISFAVPLLGASLSFPLP
Homology
BLAST of Sgr025330 vs. NCBI nr
Match:
KAG6593556.1 (hypothetical protein SDJN03_13032, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 125.6 bits (314), Expect = 2.8e-25
Identity = 67/112 (59.82%), Postives = 80/112 (71.43%), Query Frame = 0
Query: 2 AQPQDEVQALLPSGHRRPSRLRIQLRRKKLPTARLGGKRRPRVVAFWRSIKEVRSNWAMR 61
+QP+DE Q+LL S HRRP R I LRRK+LP RLGG+R PR A WRSI+ W M+
Sbjct: 7 SQPKDEAQSLLHSSHRRPHRRWIHLRRKRLPIVRLGGERPPRAAAHWRSIR--FRKWLMK 66
Query: 62 LRCACMVKKLNQFFGKEIAA---AGAGFDAFQKRLLMEISFAVPLLGASLSF 111
+RC C+VKKL Q FGK + G GFDAF KR+LMEIS AVP+LGASL+F
Sbjct: 67 IRCDCLVKKLKQLFGKGTGSGGDGGGGFDAFLKRILMEISLAVPVLGASLAF 116
BLAST of Sgr025330 vs. NCBI nr
Match:
KAG7013982.1 (hypothetical protein SDJN02_24152, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 117.9 bits (294), Expect = 5.8e-23
Identity = 64/107 (59.81%), Postives = 76/107 (71.03%), Query Frame = 0
Query: 2 AQPQDEVQALLPSGHRRPSRLRIQLRRKKLPTARLGGKRRPRVVAFWRSIKEVR-SNWAM 61
+Q QDE Q LL SGHRRP R I LRRKKL TARLGG+R PR WRSI++VR W M
Sbjct: 7 SQLQDEAQPLLLSGHRRPLRRWIHLRRKKLSTARLGGRRPPRAAVIWRSIRKVRMRKWLM 66
Query: 62 RLRCACMVKKLNQFFGKEIAAAGAGFDAFQKRLLMEISFAVPLLGAS 108
++RC C VKK+N+ F K+ GF+ F KR+LMEIS AVP+LGAS
Sbjct: 67 KVRCDCKVKKINELFDKD----NGGFNGFLKRILMEISSAVPVLGAS 109
BLAST of Sgr025330 vs. NCBI nr
Match:
KAG6575440.1 (hypothetical protein SDJN03_26079, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 117.9 bits (294), Expect = 5.8e-23
Identity = 64/107 (59.81%), Postives = 76/107 (71.03%), Query Frame = 0
Query: 2 AQPQDEVQALLPSGHRRPSRLRIQLRRKKLPTARLGGKRRPRVVAFWRSIKEVR-SNWAM 61
+Q QDE Q LL SGHRRP R I LRRKKL TARLGG+R PR WRSI++VR W M
Sbjct: 7 SQLQDEAQPLLLSGHRRPLRRWIHLRRKKLSTARLGGRRPPRAAVIWRSIRKVRMRKWLM 66
Query: 62 RLRCACMVKKLNQFFGKEIAAAGAGFDAFQKRLLMEISFAVPLLGAS 108
++RC C VKK+N+ F K+ GF+ F KR+LMEIS AVP+LGAS
Sbjct: 67 KVRCDCKVKKMNELFDKD----NGGFNGFLKRILMEISSAVPVLGAS 109
BLAST of Sgr025330 vs. NCBI nr
Match:
KAA0059393.1 (hypothetical protein E6C27_scaffold242G001190 [Cucumis melo var. makuwa] >TYK03934.1 hypothetical protein E5676_scaffold347G001310 [Cucumis melo var. makuwa])
HSP 1 Score: 102.1 bits (253), Expect = 3.3e-18
Identity = 62/107 (57.94%), Postives = 76/107 (71.03%), Query Frame = 0
Query: 3 QPQDEVQALLPSGHRRPSRLRIQLRRKKLPTARLGGKRRPRVVAFWRSIKEVRSNWAMRL 62
+ QDE ++LL SG+RRPSR I LRRKKLPTARLGG+R PR VA WRSIKE++ MR
Sbjct: 8 EAQDEAKSLLRSGYRRPSRRWILLRRKKLPTARLGGRRPPRTVAIWRSIKEIK----MRK 67
Query: 63 RCACMVKKLNQFFGKEIAAAGAGFDAFQKRLLMEISFAVPLLGASLS 110
A M K+ K+I AGF+AF K++L+EIS A+PLLG SLS
Sbjct: 68 WAAMMTMKVR---CKDI----AGFNAFLKKILLEISLAIPLLGVSLS 103
BLAST of Sgr025330 vs. NCBI nr
Match:
KAE8646502.1 (hypothetical protein Csa_015773 [Cucumis sativus])
HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 55/107 (51.40%), Postives = 73/107 (68.22%), Query Frame = 0
Query: 3 QPQDEVQALLPSGHRRPSRLRIQLRRKKLPTARLGGKRRPRVVAFWRSIKEVR-SNWAMR 62
+ +DE ++LL SG+RRPSR I LRRKKLPTARLGG+R PR A WRSIKE++ WAM
Sbjct: 9 EAEDEAKSLLRSGYRRPSRRWILLRRKKLPTARLGGRRPPRTAAIWRSIKEIKMRKWAMT 68
Query: 63 LRCACMVKKLNQFFGKEIAAAGAGFDAFQKRLLMEISFAVPLLGASL 109
+ N+ K+IA+ F+AF +++L+EIS A+PLLG L
Sbjct: 69 M--------TNKVRCKDIAS----FNAFLRKILLEISLAIPLLGDGL 103
BLAST of Sgr025330 vs. ExPASy TrEMBL
Match:
A0A5A7UTZ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001310 PE=4 SV=1)
HSP 1 Score: 102.1 bits (253), Expect = 1.6e-18
Identity = 62/107 (57.94%), Postives = 76/107 (71.03%), Query Frame = 0
Query: 3 QPQDEVQALLPSGHRRPSRLRIQLRRKKLPTARLGGKRRPRVVAFWRSIKEVRSNWAMRL 62
+ QDE ++LL SG+RRPSR I LRRKKLPTARLGG+R PR VA WRSIKE++ MR
Sbjct: 8 EAQDEAKSLLRSGYRRPSRRWILLRRKKLPTARLGGRRPPRTVAIWRSIKEIK----MRK 67
Query: 63 RCACMVKKLNQFFGKEIAAAGAGFDAFQKRLLMEISFAVPLLGASLS 110
A M K+ K+I AGF+AF K++L+EIS A+PLLG SLS
Sbjct: 68 WAAMMTMKVR---CKDI----AGFNAFLKKILLEISLAIPLLGVSLS 103
BLAST of Sgr025330 vs. ExPASy TrEMBL
Match:
A0A0A0KCH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448920 PE=4 SV=1)
HSP 1 Score: 97.4 bits (241), Expect = 4.0e-17
Identity = 57/108 (52.78%), Postives = 75/108 (69.44%), Query Frame = 0
Query: 3 QPQDEVQALLPSGHRRPSRLRIQLRRKKLPTARLGGKRRPRVVAFWRSIKEVR-SNWAMR 62
+ +DE ++LL SG+RRPSR I LRRKKLPTARLGG+R PR A WRSIKE++ WAM
Sbjct: 9 EAEDEAKSLLRSGYRRPSRRWILLRRKKLPTARLGGRRPPRTAAIWRSIKEIKMRKWAMT 68
Query: 63 LRCACMVKKLNQFFGKEIAAAGAGFDAFQKRLLMEISFAVPLLGASLS 110
+ N+ K+IA+ F+AF +++L+EIS A+PLLG SLS
Sbjct: 69 M--------TNKVRCKDIAS----FNAFLRKILLEISLAIPLLGVSLS 104
BLAST of Sgr025330 vs. ExPASy TrEMBL
Match:
A0A6J1GVZ8 (uncharacterized protein LOC111458050 OS=Cucurbita moschata OX=3662 GN=LOC111458050 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 50/116 (43.10%), Postives = 77/116 (66.38%), Query Frame = 0
Query: 1 MAQPQDEVQ----ALLPSGHRRPSRLRIQLRRKKLPTARLGGKRRPRVVAFWRSIKEVRS 60
M QP + + A L G RR +R ++ RR+++P ARLGGKR R+VA+ R ++++R
Sbjct: 1 MGQPYEPEEGQPGAGLRRGTRRGTRRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRL 60
Query: 61 NWAMRLRCACMVKKLNQFFG---KEIAAAGAGFDAFQKRLLMEISFAVPLLGASLS 110
W ++L+C MVKK+ +++ K+I AGA ++Q RLL+E SFA+P+LG SLS
Sbjct: 61 RW-VKLKCIAMVKKMKEYYTRLMKDIIEAGAYARSYQHRLLLETSFAIPILGVSLS 115
BLAST of Sgr025330 vs. ExPASy TrEMBL
Match:
A0A2P6RYU2 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0146001 PE=4 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 3.8e-12
Identity = 50/114 (43.86%), Postives = 73/114 (64.04%), Query Frame = 0
Query: 1 MAQPQDEVQALLPSGH--RRPSRLRIQLRRKKLPTARLGGKRRPRVVAFWRSIKEVRSNW 60
MAQ ++ Q P + R SR RI LRR+KLP ARLGGK+ PR V R +++R W
Sbjct: 33 MAQNRELDQQTRPLANPDSRMSRYRISLRRRKLPMARLGGKKPPRGVMLVRMFRKIRLRW 92
Query: 61 AMRLRCACMVKKLNQFFG---KEIAAAGAGFDAFQKRLLMEISFAVPLLGASLS 110
++L+ CM+KKL + + K++ AGA F+ FQ+++ ME +FA+P +G SLS
Sbjct: 93 -LKLKYFCMLKKLKESYKNMVKDLMEAGASFETFQQKIFMEATFAIP-MGVSLS 144
BLAST of Sgr025330 vs. ExPASy TrEMBL
Match:
A0A6J1GAR0 (uncharacterized protein LOC111452314 OS=Cucurbita moschata OX=3662 GN=LOC111452314 PE=4 SV=1)
HSP 1 Score: 80.1 bits (196), Expect = 6.5e-12
Identity = 44/99 (44.44%), Postives = 68/99 (68.69%), Query Frame = 0
Query: 14 SGHRRPSRLRIQLRRKKLPTARLGGKRRPRVVAFWRSIKEVRSNWAMRLRCACMVKKLNQ 73
+G R +R IQ RR+++ ARLGGKR R+VA+ R ++++R W ++L+C MVKK+ +
Sbjct: 15 AGLRWATRQGIQFRRRRMAVARLGGKRSGRLVAWGRRLRKIRLRW-VKLKCIAMVKKVKK 74
Query: 74 FFG---KEIAAAGAGFDAFQKRLLMEISFAVPLLGASLS 110
+ K++ AGA D++Q RLL+E SFA+P+LG S S
Sbjct: 75 YCASLMKDMMEAGAYGDSYQHRLLLETSFAIPILGVSFS 112
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6593556.1 | 2.8e-25 | 59.82 | hypothetical protein SDJN03_13032, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7013982.1 | 5.8e-23 | 59.81 | hypothetical protein SDJN02_24152, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAG6575440.1 | 5.8e-23 | 59.81 | hypothetical protein SDJN03_26079, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAA0059393.1 | 3.3e-18 | 57.94 | hypothetical protein E6C27_scaffold242G001190 [Cucumis melo var. makuwa] >TYK039... | [more] |
KAE8646502.1 | 1.5e-15 | 51.40 | hypothetical protein Csa_015773 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UTZ4 | 1.6e-18 | 57.94 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0KCH4 | 4.0e-17 | 52.78 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448920 PE=4 SV=1 | [more] |
A0A6J1GVZ8 | 1.2e-13 | 43.10 | uncharacterized protein LOC111458050 OS=Cucurbita moschata OX=3662 GN=LOC1114580... | [more] |
A0A2P6RYU2 | 3.8e-12 | 43.86 | Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0146001 PE=4... | [more] |
A0A6J1GAR0 | 6.5e-12 | 44.44 | uncharacterized protein LOC111452314 OS=Cucurbita moschata OX=3662 GN=LOC1114523... | [more] |
Match Name | E-value | Identity | Description | |