Sgr025085 (gene) Monk fruit (Qingpiguo) v1

Overview
NameSgr025085
Typegene
OrganismSiraitia grosvenorii (Monk fruit (Qingpiguo) v1)
DescriptionPolyubiquitin
Locationtig00003412: 1255865 .. 1258057 (-)
RNA-Seq ExpressionSgr025085
SyntenySgr025085
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTCTCATAGTTACATATGGACACGAATTCGCCATTGAAATAAGCAACCAAGAACCAGTCGTCGAGATCAAAAGAAAGATCGAACAGTTCATCGGCATCCCCGTGGAATCACAAACTCTCTCGGTTTACGGATGCGAATTAGTCGATGGACTCGACATGGAGGATTATCAATTCATCTCAGAAGGTTCACGAATCGATCTCTCAATCAACCGAATAATCGCGCCGCCAATACTAAATCTGCAGACAAGCAAGATTCCGATCACCGTAAAATTTTCCGGCAGACAGATAAACGTCGAGGTCGATATAACGGAGACGGTTCGTAGCTTAAAGGAGAAAATTCAGATAATCGACGGCACGCCGATGCAAAGAATGTCGTTATTCCATTCCGGCGTGGAATTAGGAGACGATTTTCGCAATTTGAGCGAGTTTGGAATAGGTGAATTTTCTGAAATAATCGTGTTCCTGAAAACGGTGAGTCGTCTGAGCGAAGCTCCGTGGAGGAAGGTGAGCTTCGTGGTGCAGACGTCGTCGAGCTTGCTTAATGCAGCTTGCATTCCCATTGAAATGAAGGACTCGAGCACCGTCGACGAGGTGAGGGAACTGCTTCTGGCCGGAGAAGTTCTTCCAGACGACGATTATCTGTTCATACACAAGCAGAGGATTATGAGAGATAAGTGTAGTTTAAGGTGGCATGGGGTCGAAAATGGCGATTTTATCTATGTTTTTAAAGGCACCGTTAGCCGTGGTGAATATTAATAACAAAATAATTTAGTTACTGGGAGAGCTTTTTTTTTTTTTCCCTCTCCAATGGAGTTTCTCCCTTGACTTTTTTTTTTAAATAATAATAATAGTAATAATAATTTTTTTTTTGTAAAGTTTGGGATCTCGAATCTTGAACAGTAAGGAAAGAAAAATCAAATCTTCATCAACTGACATGTTATTCTTATACTTGAATTTTTGAATAATTAAAAATAAAACAATAAGTTTATTCTTTTTATTTATTAATAAAACTGGTAAATTCTAGGCATTTAATTTTTCTAATATAGCCATCTATTACTTTGCCATATGAATAGAACTCCTAATTTACTAATTTTATGAATAAATAAAAAGAATAATTTTTTTTATTTTTAATTAATAAAAATTTAAGTCTAACAGTAACATGTCCGTTCATTAAGATTTGATTTTTCTTTCCTTACCATACCTATTTAAGATTCGACAAACTTTTTTTTATTTTTAAAAAAATAACGAAAATTGAGTGGAAGAAATTTGGTGTATCTTTTGCCAATTTAAATGGTAAATAATTCACATATTATTTGAGCACGCAAAACAATAAGATTCTAAACATGAAGCTAATATATATCAAATATCAAACGAACAGGAAACAATTATTTGTTGCTTTTTTTCTTTTTTTTAATAATCGTGGTGAATAATCAATTAACTACAAAAACAAATAAATATCCCCCTCAAAATTCCTAGCTTAGAATTAAAAAAAATATATTAAATTAAATATTTTGTCATGTACTTTAAATATTTGTCTATTTAATAATTTAAGCCATTGCTTAATTGATTGAGATCATATTATAGATAATTATAACTCAAGATTACTATCGTAATTAAAAATTTTAAAATTTAGGTATTAAATAATGATCTAAACACAATCAATCAAATTTATCAAAAAAAAAAAAAAAACACAATCAATCAAAACATACATTAGTAACTTCTGTTTAGCTCGTCCAATCTCCCTTTAAATCTTGATATTCTACAGACAAAAAAATTAAAAAAAAAACTCAAAATACTATAACGAAACATATAATTTGCTTTAGAAAACCCTACTTTTGACCAATGCCATAAGCAGAAGATCAGGACATGTAAAGAAGCAATGGCGAGAGGGCGAGCATCAGGATCATCGCCATCGTCGTCATCAAGCGGATAGAAAAAGATATAAATGAGGGATCCATCTTTGACGCCGCAATCAACGAGCGAGAATCCATCATCGCCCTCACTGATCAGACGTCCACGGTTGTCGTCAGCGATGAAGATCAGACGGTCGGAAGGGAGGTTATGCTGGGCACTGATCTCCCGTTTAAGATCAGAAACGGTGGCGTCGTCTTCCACCTGAATGAAGAAGAGAGAACCAGTCAAGTTTTCCAGCACCAACTTCATCGTTCGTCGTCGTTTCGGCCTTAA

mRNA sequence

ATGGAGATTCTCATAGTTACATATGGACACGAATTCGCCATTGAAATAAGCAACCAAGAACCAGTCGTCGAGATCAAAAGAAAGATCGAACAGTTCATCGGCATCCCCGTGGAATCACAAACTCTCTCGGTTTACGGATGCGAATTAGTCGATGGACTCGACATGGAGGATTATCAATTCATCTCAGAAGGTTCACGAATCGATCTCTCAATCAACCGAATAATCGCGCCGCCAATACTAAATCTGCAGACAAGCAAGATTCCGATCACCGTAAAATTTTCCGGCAGACAGATAAACGTCGAGGTCGATATAACGGAGACGGTTCGTAGCTTAAAGGAGAAAATTCAGATAATCGACGGCACGCCGATGCAAAGAATGTCGTTATTCCATTCCGGCGTGGAATTAGGAGACGATTTTCGCAATTTGAGCGAGTTTGGAATAGGTGAATTTTCTGAAATAATCGTGTTCCTGAAAACGGTGAGTCGTCTGAGCGAAGCTCCGTGGAGGAAGGTGAGCTTCGTGGTGCAGACGTCGTCGAGCTTGCTTAATGCAGCTTGCATTCCCATTGAAATGAAGGACTCGAGCACCGTCGACGAGGTGAGGGAACTGCTTCTGGCCGGAGAAGTTCTTCCAGACGACGATTATCTGTTCATACACAAGCAGAGGATTATGAGAGATAAGTGTAGTTTAAGGATCATCGCCATCGTCGTCATCAAGCGGATAGAAAAAGATATAAATGAGGGATCCATCTTTGACGCCGCAATCAACGAGCGAGAATCCATCATCGCCCTCACTGATCAGACGTCCACGGTTGTCGTCAGCGATGAAGATCAGACGGTCGGAAGGGAGGTTATGCTGGGCACTGATCTCCCGTTTAAGATCAGAAACGGTGGCGTCGTCTTCCACCTGAATGAAGAAGAGAGAACCAGTCAAGTTTTCCAGCACCAACTTCATCGTTCGTCGTCGTTTCGGCCTTAA

Coding sequence (CDS)

ATGGAGATTCTCATAGTTACATATGGACACGAATTCGCCATTGAAATAAGCAACCAAGAACCAGTCGTCGAGATCAAAAGAAAGATCGAACAGTTCATCGGCATCCCCGTGGAATCACAAACTCTCTCGGTTTACGGATGCGAATTAGTCGATGGACTCGACATGGAGGATTATCAATTCATCTCAGAAGGTTCACGAATCGATCTCTCAATCAACCGAATAATCGCGCCGCCAATACTAAATCTGCAGACAAGCAAGATTCCGATCACCGTAAAATTTTCCGGCAGACAGATAAACGTCGAGGTCGATATAACGGAGACGGTTCGTAGCTTAAAGGAGAAAATTCAGATAATCGACGGCACGCCGATGCAAAGAATGTCGTTATTCCATTCCGGCGTGGAATTAGGAGACGATTTTCGCAATTTGAGCGAGTTTGGAATAGGTGAATTTTCTGAAATAATCGTGTTCCTGAAAACGGTGAGTCGTCTGAGCGAAGCTCCGTGGAGGAAGGTGAGCTTCGTGGTGCAGACGTCGTCGAGCTTGCTTAATGCAGCTTGCATTCCCATTGAAATGAAGGACTCGAGCACCGTCGACGAGGTGAGGGAACTGCTTCTGGCCGGAGAAGTTCTTCCAGACGACGATTATCTGTTCATACACAAGCAGAGGATTATGAGAGATAAGTGTAGTTTAAGGATCATCGCCATCGTCGTCATCAAGCGGATAGAAAAAGATATAAATGAGGGATCCATCTTTGACGCCGCAATCAACGAGCGAGAATCCATCATCGCCCTCACTGATCAGACGTCCACGGTTGTCGTCAGCGATGAAGATCAGACGGTCGGAAGGGAGGTTATGCTGGGCACTGATCTCCCGTTTAAGATCAGAAACGGTGGCGTCGTCTTCCACCTGAATGAAGAAGAGAGAACCAGTCAAGTTTTCCAGCACCAACTTCATCGTTCGTCGTCGTTTCGGCCTTAA

Protein sequence

MEILIVTYGHEFAIEISNQEPVVEIKRKIEQFIGIPVESQTLSVYGCELVDGLDMEDYQFISEGSRIDLSINRIIAPPILNLQTSKIPITVKFSGRQINVEVDITETVRSLKEKIQIIDGTPMQRMSLFHSGVELGDDFRNLSEFGIGEFSEIIVFLKTVSRLSEAPWRKVSFVVQTSSSLLNAACIPIEMKDSSTVDEVRELLLAGEVLPDDDYLFIHKQRIMRDKCSLRIIAIVVIKRIEKDINEGSIFDAAINERESIIALTDQTSTVVVSDEDQTVGREVMLGTDLPFKIRNGGVVFHLNEEERTSQVFQHQLHRSSSFRP
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022136123.14.0e-10987.93ubiquitin-like protein-NEDD8-like protein RUB3 [Momordica charantia][more]
XP_022952137.11.4e-9880.95uncharacterized protein LOC111454902 [Cucurbita moschata][more]
KAG6572305.11.2e-9780.52hypothetical protein SDJN03_29033, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011917.11.6e-9780.52ubi, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022968884.13.5e-9779.22uncharacterized protein LOC111468065 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
P0CG706.2e-1225.55Polyubiquitin OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 ... [more]
P427391.1e-1126.43Polyubiquitin (Fragment) OS=Acetabularia peniculus OX=35862 PE=3 SV=2[more]
P0CG743.1e-1125.55Polyubiquitin OS=Candida albicans OX=5476 GN=UBI4 PE=1 SV=1[more]
P0CG753.1e-1125.55Polyubiquitin OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 /... [more]
P0CG723.1e-1125.55Polyubiquitin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 G... [more]
Match NameE-valueIdentityDescription
A0A6J1C6R72.0e-10987.93ubiquitin-like protein-NEDD8-like protein RUB3 OS=Momordica charantia OX=3673 GN... [more]
A0A6J1GJL47.0e-9980.95uncharacterized protein LOC111454902 OS=Cucurbita moschata OX=3662 GN=LOC1114549... [more]
A0A6J1I0Y41.7e-9779.22uncharacterized protein LOC111468065 OS=Cucurbita maxima OX=3661 GN=LOC111468065... [more]
A0A0A0K5K61.8e-8372.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044280 PE=4 SV=1[more]
A0A1S3C1K22.2e-8169.62uncharacterized protein LOC103495579 OS=Cucumis melo OX=3656 GN=LOC103495579 PE=... [more]
Match NameE-valueIdentityDescription
AT2G32350.11.1e-6455.91Ubiquitin-like superfamily protein [more]
AT4G05320.21.1e-1125.11polyubiquitin 10 [more]
AT4G02890.11.1e-1125.11Ubiquitin family protein [more]
AT4G05050.11.1e-1125.11ubiquitin 11 [more]
AT4G05320.31.1e-1125.11polyubiquitin 10 [more]
InterPro
Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin-like domainSMARTSM00213ubq_7coord: 87..158
e-value: 1.0E-5
score: 35.0
coord: 1..72
e-value: 0.0015
score: 27.8
IPR000626Ubiquitin-like domainPFAMPF00240ubiquitincoord: 9..72
e-value: 5.8E-9
score: 35.6
coord: 89..158
e-value: 8.2E-13
score: 47.9
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 87..158
score: 15.339979
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 1..60
score: 11.398631
NoneNo IPR availableGENE3D3.10.20.90coord: 1..70
e-value: 5.2E-9
score: 37.9
NoneNo IPR availableGENE3D3.10.20.90coord: 86..158
e-value: 3.5E-17
score: 64.1
NoneNo IPR availablePANTHERPTHR10621:SF39UBIQUITIN-LIKE SUPERFAMILY PROTEINcoord: 1..231
NoneNo IPR availablePANTHERPTHR10621UV EXCISION REPAIR PROTEIN RAD23coord: 1..231
NoneNo IPR availableCDDcd17039Ubl_ubiquitin_likecoord: 89..156
e-value: 1.39406E-10
score: 54.5246
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 81..161
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sgr025085.1Sgr025085.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component GO:0005829 cytosol
cellular_component GO:0005654 nucleoplasm
molecular_function GO:0031593 polyubiquitin modification-dependent protein binding
molecular_function GO:0070628 proteasome binding
molecular_function GO:0043130 ubiquitin binding
molecular_function GO:0005515 protein binding