Sgr016970 (gene) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr016970
Type	gene
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	Unknown protein
Location	tig00153017: 98906 .. 99133 (+)
RNA-Seq Expression	Sgr016970
Synteny	Sgr016970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTCTTTAAGTTGGCGTGCATGATTGCCGGAAACATGGTGGAAGTCGGAATCAGTCTCGGCGACGGTGAAGGAAACGGCTGCATCGTTTGGAGCATAGAGGATGAAGGGAAGAGGAGAGTGGTCCGGCCAAACGAGGTTGCCGGCGAGAGGAAGGAAGTGATGGAGAGTGAGAGAGAGGGAGTGTTTGAGTTTTCCAAGGATGGAGTCGAAGATGGAATCTGA

mRNA sequence

ATGAGAGTCTTTAAGTTGGCGTGCATGATTGCCGGAAACATGGTGGAAGTCGGAATCAGTCTCGGCGACGGTGAAGGAAACGGCTGCATCGTTTGGAGCATAGAGGATGAAGGGAAGAGGAGAGTGGTCCGGCCAAACGAGGTTGCCGGCGAGAGGAAGGAAGTGATGGAGAGTGAGAGAGAGGGAGTGTTTGAGTTTTCCAAGGATGGAGTCGAAGATGGAATCTGA

Coding sequence (CDS)

ATGAGAGTCTTTAAGTTGGCGTGCATGATTGCCGGAAACATGGTGGAAGTCGGAATCAGTCTCGGCGACGGTGAAGGAAACGGCTGCATCGTTTGGAGCATAGAGGATGAAGGGAAGAGGAGAGTGGTCCGGCCAAACGAGGTTGCCGGCGAGAGGAAGGAAGTGATGGAGAGTGAGAGAGAGGGAGTGTTTGAGTTTTCCAAGGATGGAGTCGAAGATGGAATCTGA

Protein sequence

MRVFKLACMIAGNMVEVGISLGDGEGNGCIVWSIEDEGKRRVVRPNEVAGERKEVMESEREGVFEFSKDGVEDGI

Homology

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BLAST of Sgr016970 vs. NCBI nr
Match: KAF7813172.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Senna tora])

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-04
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 21  LGDGEGNGCIVWSIEDEGKRRVVRPNEVAGERKEVMESEREGVFEFSKDGVEDG 75
           +GDGEG+G  V  + D G R V  P+E   ER+E +ESEREGVFEF K G+E+G
Sbjct: 267 VGDGEGDGVAV-EVGDGGNRGVRGPSEGGSEREEGVESEREGVFEFGKKGIEEG 319

The following BLAST results are available for this feature:

BLAST of Sgr016970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7813172.1	1.8e-04	55.56	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Senna tora]	[more]

BLAST of Sgr016970 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sgr016970 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sgr016970 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sgr016970.1	Sgr016970.1	mRNA