Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCGAAACTGCAACTTGGAACTTCGTCTTTCTCCCTCCTCCGTCTCTCTTCCGGCCACCTCCTTCTCCGTCGCTTCCGACCACCCCACCGTCGCCGCCGAACACTCCAACGGAAGCCCACAAAATCAACAACTCACCATCTTCTACAACGGCAGGATCTGCGTCTGCGACGTTACAGAGCTTCAGGTACGTACTTACGATTTTTTTTTTCTTTTTTACCCTTTTTCAACTTCTCTTTCACGGGTTGTGTAGTACGAAACTTTCGTGCACCCGTTGGTCTATTTCTGGGGAATCCGCGTGGCAGGCGCGGATTGACCGTCGTCCGAATATGGGCCGCTGGCTGTCACTACGAGGCGTTGTACTTTTCTTCTTTTTGACTAAAATCGTCGAACGTCCCATACGACACTGCGCGTGCCCCCTTTCAGCGTAAAGCCGACAACGCGTTCTTGCTTTGTTGACATGTCGTTTTCACCGACTTTCGCCAACATTCGCTCTAACCTATTCTCTTTGTAAAAAACCCACGTTTTTTTTTTTTTTTATCTTTAATCATGTCTTCTTTTAATTTATTAATCTACTCGTATATATTTAATATAGAATAATCTCGTAATCCTTTTAATTATTATTATATCCTTTATTAAATTAATTTATTTTGATTCAAATATCAGAATATCAGAAAATAGTTGCGAATTTTCAGAGAGATATTCTTGGGTCAGTGGTCAGCTTTGATTGTAATCTGCTAATAATTTGCCTTAAAAACAAAATCCCGGAATTTTGTATGATATCTTTGATTGAATAGTTAGGATCGTATGTTGCAAGAGTATGATGTGGATAATTTAAATTTCAAAATTTTGAGTTAAGATATCATAGAATGCCACAAGGTTTTTAGATAATAATGATATTATGGATGAATGTTGCAGGCGAGAGCAATTTTAATGCTGGCAACAAAAGAAATGGAGGAGAAGACCCAAAGGAACTGCAACAGTCTCAGGCGCCACGGACCCCGACCACCCCGGGGCTCTACATGAAGAGATCGCTGCAAAGATTTCTGCAGAAGAGGAAGCATCGAGTCCAAGCTACTTCTCCATACCATCAACAATGAAGAACAATGATATTGGAAGAAAGTGA
mRNA sequence
ATGAGGCGAAACTGCAACTTGGAACTTCGTCTTTCTCCCTCCTCCGTCTCTCTTCCGGCCACCTCCTTCTCCGTCGCTTCCGACCACCCCACCGTCGCCGCCGAACACTCCAACGGAAGCCCACAAAATCAACAACTCACCATCTTCTACAACGGCAGGATCTGCGTCTGCGACGTTACAGAGCTTCAGGCGCGGATTGACCGTCGTCCGAATATGGGCCGCTGGCTGTCACTACGAGGCGTTAAATGGAGGAGAAGACCCAAAGGAACTGCAACAGTCTCAGGCGCCACGGACCCCGACCACCCCGGGGCTCTACATGAAGAGATCGCTGCAAAGATTTCTGCAGAAGAGGAAGCATCGAGTCCAAGCTACTTCTCCATACCATCAACAATGAAGAACAATGATATTGGAAGAAAGTGA
Coding sequence (CDS)
ATGAGGCGAAACTGCAACTTGGAACTTCGTCTTTCTCCCTCCTCCGTCTCTCTTCCGGCCACCTCCTTCTCCGTCGCTTCCGACCACCCCACCGTCGCCGCCGAACACTCCAACGGAAGCCCACAAAATCAACAACTCACCATCTTCTACAACGGCAGGATCTGCGTCTGCGACGTTACAGAGCTTCAGGCGCGGATTGACCGTCGTCCGAATATGGGCCGCTGGCTGTCACTACGAGGCGTTAAATGGAGGAGAAGACCCAAAGGAACTGCAACAGTCTCAGGCGCCACGGACCCCGACCACCCCGGGGCTCTACATGAAGAGATCGCTGCAAAGATTTCTGCAGAAGAGGAAGCATCGAGTCCAAGCTACTTCTCCATACCATCAACAATGAAGAACAATGATATTGGAAGAAAGTGA
Protein sequence
MRRNCNLELRLSPSSVSLPATSFSVASDHPTVAAEHSNGSPQNQQLTIFYNGRICVCDVTELQARIDRRPNMGRWLSLRGVKWRRRPKGTATVSGATDPDHPGALHEEIAAKISAEEEASSPSYFSIPSTMKNNDIGRK
Homology
BLAST of Sgr012263 vs. NCBI nr
Match:
XP_038883218.1 (protein TIFY 5A-like [Benincasa hispida])
HSP 1 Score: 85.9 bits (211), Expect = 3.0e-13
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 0
Query: 1 MRRNCNLELRLSPSSVSLPATSFSVASDHPTVAAEHSNGSPQNQQLTIFYNGRICVCDVT 60
MRRNCNLELRLSP+S + A SDH + AA+ GSPQ+QQLTIFYNGRICVCDVT
Sbjct: 10 MRRNCNLELRLSPTSAAAAA-----VSDHSSAAAD---GSPQSQQLTIFYNGRICVCDVT 66
Query: 61 ELQAR 66
E QAR
Sbjct: 70 EFQAR 66
BLAST of Sgr012263 vs. NCBI nr
Match:
KAG6581435.1 (Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 84.7 bits (208), Expect = 6.7e-13
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 0
Query: 1 MRRNCNLELRLSPSSVSLPATSFSVASDHPTVAAEHSNGSPQNQQLTIFYNGRICVCDVT 60
MRRNCNLELRLSP+S ++ A SDH + A N +PQ+QQLTIFYNGRICVCD T
Sbjct: 9 MRRNCNLELRLSPTSSAIAA-----VSDHSSAAVAAPNANPQSQQLTIFYNGRICVCDAT 67
Query: 61 ELQA 65
ELQA
Sbjct: 69 ELQA 67
BLAST of Sgr012263 vs. NCBI nr
Match:
KAG7034727.1 (Protein TIFY 5A, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 84.7 bits (208), Expect = 6.7e-13
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 0
Query: 1 MRRNCNLELRLSPSSVSLPATSFSVASDHPTVAAEHSNGSPQNQQLTIFYNGRICVCDVT 60
MRRNCNLELRLSP+S ++ A SDH + A N +PQ+QQLTIFYNGRICVCD T
Sbjct: 1 MRRNCNLELRLSPTSSAIAA-----VSDHSSAAVAAPNANPQSQQLTIFYNGRICVCDAT 59
Query: 61 ELQA 65
ELQA
Sbjct: 61 ELQA 59
BLAST of Sgr012263 vs. NCBI nr
Match:
XP_022926109.1 (protein TIFY 5A [Cucurbita moschata])
HSP 1 Score: 84.7 bits (208), Expect = 6.7e-13
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 0
Query: 1 MRRNCNLELRLSPSSVSLPATSFSVASDHPTVAAEHSNGSPQNQQLTIFYNGRICVCDVT 60
MRRNCNLELRLSP+S ++ A SDH + A N +PQ+QQLTIFYNGRICVCD T
Sbjct: 9 MRRNCNLELRLSPTSSAIAA-----VSDHSSAAVAAPNANPQSQQLTIFYNGRICVCDAT 67
Query: 61 ELQA 65
ELQA
Sbjct: 69 ELQA 67
BLAST of Sgr012263 vs. NCBI nr
Match:
XP_023544865.1 (protein TIFY 5A [Cucurbita pepo subsp. pepo])
HSP 1 Score: 83.6 bits (205), Expect = 1.5e-12
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 0
Query: 1 MRRNCNLELRLSPSSVSLPATSFSVASDHPTVAAEHSNGSPQNQQLTIFYNGRICVCDVT 60
MRRNCNLELRLSP+S ++ A SD + A +N SPQ+QQLTIFYNGRICVCD T
Sbjct: 9 MRRNCNLELRLSPTSSAIAA-----VSDQSSAAVAAANASPQSQQLTIFYNGRICVCDAT 67
Query: 61 ELQA 65
ELQA
Sbjct: 69 ELQA 67
BLAST of Sgr012263 vs. ExPASy TrEMBL
Match:
A0A6J1EE47 (protein TIFY 5A OS=Cucurbita moschata OX=3662 GN=LOC111433321 PE=3 SV=1)
HSP 1 Score: 84.7 bits (208), Expect = 3.3e-13
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 0
Query: 1 MRRNCNLELRLSPSSVSLPATSFSVASDHPTVAAEHSNGSPQNQQLTIFYNGRICVCDVT 60
MRRNCNLELRLSP+S ++ A SDH + A N +PQ+QQLTIFYNGRICVCD T
Sbjct: 9 MRRNCNLELRLSPTSSAIAA-----VSDHSSAAVAAPNANPQSQQLTIFYNGRICVCDAT 67
Query: 61 ELQA 65
ELQA
Sbjct: 69 ELQA 67
BLAST of Sgr012263 vs. ExPASy TrEMBL
Match:
A0A0A0KI51 (Tify domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G523460 PE=3 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 4.7e-12
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 0
Query: 1 MRRNCNLELRLSPSSVSLPATSFSVASDHPTVAAEHSNGSPQNQQLTIFYNGRICVCDVT 60
MRRNCNLELRLSP+ P + + SD P+ A+ SPQ+QQLTIFYNGRICVCDVT
Sbjct: 10 MRRNCNLELRLSPT--PNPNPNPAAVSDQPSATAD---DSPQSQQLTIFYNGRICVCDVT 69
Query: 61 ELQAR 66
ELQAR
Sbjct: 70 ELQAR 69
BLAST of Sgr012263 vs. ExPASy TrEMBL
Match:
A0A1R3H5U7 (Tify OS=Corchorus olitorius OX=93759 GN=COLO4_31051 PE=3 SV=1)
HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 44/68 (64.71%), Postives = 47/68 (69.12%), Query Frame = 0
Query: 1 MRRNCNLELRLSPSSVSLPATSFSVASDHPTVAAEHSNGSPQN---QQLTIFYNGRICVC 60
MRRNCNLELRL PS S+ A D + E SN SPQN QQLTIFYNG+ICVC
Sbjct: 1 MRRNCNLELRLLPS-------SYPTAGDRHDMVEESSNVSPQNQQQQQLTIFYNGKICVC 60
Query: 61 DVTELQAR 66
DVTELQAR
Sbjct: 61 DVTELQAR 61
BLAST of Sgr012263 vs. ExPASy TrEMBL
Match:
A0A1S3AZ71 (protein TIFY 5A OS=Cucumis melo OX=3656 GN=LOC103484359 PE=3 SV=1)
HSP 1 Score: 79.0 bits (193), Expect = 1.8e-11
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 0
Query: 1 MRRNCNLELRLSPSSVSLPATSFSVASDHPTVAAEHSNGSPQNQQLTIFYNGRICVCDVT 60
MRRN NLELRLSP+ S A + SV S +P+ A GSPQ+QQLTIFYNGRICVCDVT
Sbjct: 10 MRRNYNLELRLSPTYSSAAAATASV-SGNPSPTA---YGSPQSQQLTIFYNGRICVCDVT 69
Query: 61 ELQAR 66
ELQAR
Sbjct: 70 ELQAR 70
BLAST of Sgr012263 vs. ExPASy TrEMBL
Match:
A0A438DHG0 (Protein TIFY 5A OS=Vitis vinifera OX=29760 GN=TIFY5A_2 PE=3 SV=1)
HSP 1 Score: 78.2 bits (191), Expect = 3.1e-11
Identity = 53/112 (47.32%), Postives = 63/112 (56.25%), Query Frame = 0
Query: 2 RRNCNLELRLSPSSVSLPATSFSVASDHPTVAAEHSNGSP----QNQQLTIFYNGRICVC 61
RRNCNLELRL P P T +S H + E GSP Q QQLTIFYNGRICVC
Sbjct: 3 RRNCNLELRLLP-----PNTDYSSPQHHHNMMMETGRGSPQEQQQQQQLTIFYNGRICVC 62
Query: 62 DVTELQARIDRRPNMGRWLSLRGVKWRRRPKGTATVSGATDPDHPGALHEEI 110
DVTELQAR + L+ R ++ + R T T S AT P +LH ++
Sbjct: 63 DVTELQARAILQ------LASREMEEKTR---TPTASDATSP----SLHSQL 96
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1EE47 | 3.3e-13 | 65.63 | protein TIFY 5A OS=Cucurbita moschata OX=3662 GN=LOC111433321 PE=3 SV=1 | [more] |
| A0A0A0KI51 | 4.7e-12 | 66.15 | Tify domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G523460 PE=3 S... | [more] |
| A0A1R3H5U7 | 1.0e-11 | 64.71 | Tify OS=Corchorus olitorius OX=93759 GN=COLO4_31051 PE=3 SV=1 | [more] |
| A0A1S3AZ71 | 1.8e-11 | 69.23 | protein TIFY 5A OS=Cucumis melo OX=3656 GN=LOC103484359 PE=3 SV=1 | [more] |
| A0A438DHG0 | 3.1e-11 | 47.32 | Protein TIFY 5A OS=Vitis vinifera OX=29760 GN=TIFY5A_2 PE=3 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
