Sed0027772 (gene) Chayote v1

Overview


Name	Sed0027772
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Histone H2A
Location	LG09: 36043665 .. 36044183 (+)
RNA-Seq Expression	Sed0027772
Synteny	Sed0027772

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTCCACAGACGCTCCGGCGAAGGGCGGCAGAGGCAAGAAAGCAGCCGGAAAATCAGTAACCCGATCGCACAAAGCCGGTCTCCAGTTCCCCGTCGGCCGCGTCGCCAGGTACCTGAAGAAAGGCCGCTACGCTCGGCGCGTCGGATCCGGCTCGCCGGTCTACCTCTCCGCCGTCCTCGAGTATCTCGCCGCCGAGGTTCGTAATCTCCAAATCATAATCACTAATTCTCAATTTCTTTCTTCATCCATCACTGCTCCGATCGTGAAAACTTCGCGATTCGTCTAGGTTTTGGAGCTGGCCGGCAACGCGGCGAGGGACAACAAGAAGAGCAGAATCGTTCCGAGGCACATTCAGCTTGCTGTGCGAAACGACGAGGAGTTGAGCAAGCTTCTCGGATCCGTCACCATCGCTAATGGAGGAGTGATGCCGAAGATTCATCCGTCGCTTTTGCCGAAGAAGGCTGGGAATGTGAAGGACAAGGCGGAGATCGGATCGGCATCGCAGGAATTTTAG

mRNA sequence

ATGAGCTCCACAGACGCTCCGGCGAAGGGCGGCAGAGGCAAGAAAGCAGCCGGAAAATCAGTAACCCGATCGCACAAAGCCGGTCTCCAGTTCCCCGTCGGCCGCGTCGCCAGGTACCTGAAGAAAGGCCGCTACGCTCGGCGCGTCGGATCCGGCTCGCCGGTCTACCTCTCCGCCGTCCTCGAGTATCTCGCCGCCGAGGTTTTGGAGCTGGCCGGCAACGCGGCGAGGGACAACAAGAAGAGCAGAATCGTTCCGAGGCACATTCAGCTTGCTGTGCGAAACGACGAGGAGTTGAGCAAGCTTCTCGGATCCGTCACCATCGCTAATGGAGGAGTGATGCCGAAGATTCATCCGTCGCTTTTGCCGAAGAAGGCTGGGAATGTGAAGGACAAGGCGGAGATCGGATCGGCATCGCAGGAATTTTAG

Coding sequence (CDS)

ATGAGCTCCACAGACGCTCCGGCGAAGGGCGGCAGAGGCAAGAAAGCAGCCGGAAAATCAGTAACCCGATCGCACAAAGCCGGTCTCCAGTTCCCCGTCGGCCGCGTCGCCAGGTACCTGAAGAAAGGCCGCTACGCTCGGCGCGTCGGATCCGGCTCGCCGGTCTACCTCTCCGCCGTCCTCGAGTATCTCGCCGCCGAGGTTTTGGAGCTGGCCGGCAACGCGGCGAGGGACAACAAGAAGAGCAGAATCGTTCCGAGGCACATTCAGCTTGCTGTGCGAAACGACGAGGAGTTGAGCAAGCTTCTCGGATCCGTCACCATCGCTAATGGAGGAGTGATGCCGAAGATTCATCCGTCGCTTTTGCCGAAGAAGGCTGGGAATGTGAAGGACAAGGCGGAGATCGGATCGGCATCGCAGGAATTTTAG

Protein sequence

MSSTDAPAKGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPSLLPKKAGNVKDKAEIGSASQEF

Homology

[Close]

BLAST of Sed0027772 vs. NCBI nr
Match: XP_038896926.1 (histone H2AX-like [Benincasa hispida])

HSP 1 Score: 253.8 bits (647), Expect = 8.6e-64
Identity = 131/142 (92.25%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MSSTDAPAKGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAV 60
           MSSTD PAKGGRG+KA+ KSV+RSHKAGLQFPVGRVARYLKKGRYA+RVGSGSPVYLSAV
Sbjct: 1   MSSTDIPAKGGRGRKASTKSVSRSHKAGLQFPVGRVARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPS 120
           LEYLAAEVLELAGNAARDNKK+RI+PRHIQLAVRNDEELSKLLGSVTIA+GGVMPKIH S
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNVKDKAEIGSASQEF 143
           LLPKKAGN KDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of Sed0027772 vs. NCBI nr
Match: KAG7025548.1 (hypothetical protein SDJN02_12044 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 131/142 (92.25%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MSSTDAPAKGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAV 60
           MSSTD PAKGGRGKK+A KSVTRSHKAGLQFPVGR+ARYLKKGRYA+RVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKGGRGKKSAVKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPS 120
           LEYLAAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLGSVTIA+GGV+PKIH S
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 121 LLPKKAGNVKDKAEIGSASQEF 143
           LLPKKAG+ KDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of Sed0027772 vs. NCBI nr
Match: XP_022960479.1 (histone H2AX-like [Cucurbita moschata])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 130/142 (91.55%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MSSTDAPAKGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAV 60
           MSSTD PAKGGRGKK+A KSVTRSHKAGLQFPVGR+ARYLKKGR+A+RVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPS 120
           LEYLAAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLGSVTIA+GGV+PKIH S
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 121 LLPKKAGNVKDKAEIGSASQEF 143
           LLPKKAG+ KDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of Sed0027772 vs. NCBI nr
Match: KAG6575875.1 (Histone H2AX, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 252.3 bits (643), Expect = 2.5e-63
Identity = 129/142 (90.85%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MSSTDAPAKGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAV 60
           MSSTD P KGGRGKK+A KSV+RSHKAGLQFPVGR+ARYLKKGRYA+RVGSGSPVYLSAV
Sbjct: 1   MSSTDVPTKGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPS 120
           LEYLAAEVLELAGNAARDNKK+RI+PRHIQLAVRNDEELSKLLGSVTIA+GGVMPKIH S
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNVKDKAEIGSASQEF 143
           LLPKKAGN K+KAEIGSASQEF
Sbjct: 121 LLPKKAGNAKNKAEIGSASQEF 142

[Close]

BLAST of Sed0027772 vs. NCBI nr
Match: XP_023548483.1 (histone H2AX-like [Cucurbita pepo subsp. pepo] >XP_023548484.1 histone H2AX-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.5 bits (641), Expect = 4.3e-63
Identity = 128/142 (90.14%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MSSTDAPAKGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAV 60
           MSSTD P KGGRGKK+A K+V+RSHKAGLQFPVGR+ARYLKKGRYA+RVGSGSPVYLSAV
Sbjct: 1   MSSTDVPTKGGRGKKSAAKAVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPS 120
           LEYL AEVLELAGNAARDNKK+RI+PRHIQLAVRNDEELSKLLGSVTIA+GGVMPKIH S
Sbjct: 61  LEYLVAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNVKDKAEIGSASQEF 143
           LLPKKAGN KDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of Sed0027772 vs. ExPASy Swiss-Prot
Match: O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.6e-55
Identity = 116/142 (81.69%), Postives = 125/142 (88.03%), Query Frame = 0


Query: 1   MSSTDAPAKGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAV 60
           MSST A  KGGRGK  A KSV+RS KAGLQFPVGR+AR+LK G+YA RVG+G+PVYLSAV
Sbjct: 1   MSST-ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPS 120
           LEYLAAEVLELAGNAARDNK +RIVPRHIQLAVRNDEELSKLLGSVTIANGGV+P IH +
Sbjct: 61  LEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGNVKDKAEIGSASQEF 143
           LLPKK G  K K EIGSASQEF
Sbjct: 121 LLPKKVG--KGKGEIGSASQEF 139

[Close]

BLAST of Sed0027772 vs. ExPASy Swiss-Prot
Match: P35063 (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.2e-54
Identity = 111/135 (82.22%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 8   AKGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAVLEYLAAE 67
           AKGGRGK  + KSV+RS KAGLQFPVGR+AR+LK G+YA RVG+G+PVYL+AVLEYLAAE
Sbjct: 6   AKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAE 65

Query: 68  VLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPSLLPKKAG 127
           VLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG+VTIANGGV+P IH  LLPKK+G
Sbjct: 66  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSG 125

Query: 128 NVKDKAEIGSASQEF 143
             KDK EIGSASQEF
Sbjct: 126 --KDKGEIGSASQEF 138

[Close]

BLAST of Sed0027772 vs. ExPASy Swiss-Prot
Match: O04848 (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 8.3e-54
Identity = 110/134 (82.09%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 9   KGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAVLEYLAAEV 68
           KGGRGK  A KSV+RS KAGLQFPVGR+AR+LK G+YA RVG+G+PVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 69  LELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPSLLPKKAGN 128
           LELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLGSVTIANGGV+P IH +LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG- 130

Query: 129 VKDKAEIGSASQEF 143
            K+K +IGSASQEF
Sbjct: 131 -KNKGDIGSASQEF 142

[Close]

BLAST of Sed0027772 vs. ExPASy Swiss-Prot
Match: Q9S9K7 (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.1e-53
Identity = 110/134 (82.09%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 9   KGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAVLEYLAAEV 68
           KGGRGK  A KSV+RS KAGLQFPVGR+AR+LK G+YA RVG+G+PVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 69  LELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPSLLPKKAGN 128
           LELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLGSVTIANGGV+P IH +LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG- 130

Query: 129 VKDKAEIGSASQEF 143
            K+K +IGSASQEF
Sbjct: 131 -KNKGDIGSASQEF 142

[Close]

BLAST of Sed0027772 vs. ExPASy Swiss-Prot
Match: A2ZL69 (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.4e-53
Identity = 110/139 (79.14%), Postives = 122/139 (87.77%), Query Frame = 0


Query: 4   TDAPAKGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAVLEY 63
           + A   GGRGK    KSV+RS KAGLQFPVGR+ARYLK G+YA RVG+G+PVYLSAVLEY
Sbjct: 2   SSAGGGGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEY 61

Query: 64  LAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPSLLP 123
           LAAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELS+LLG+VTIA GGV+P IH +LLP
Sbjct: 62  LAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLP 121

Query: 124 KKAGNVKDKAEIGSASQEF 143
           KK G  KDKA+IGSASQEF
Sbjct: 122 KKGG--KDKADIGSASQEF 138

[Close]

BLAST of Sed0027772 vs. ExPASy TrEMBL
Match: A0A6J1HB52 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111461202 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.1e-64
Identity = 130/142 (91.55%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MSSTDAPAKGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAV 60
           MSSTD PAKGGRGKK+A KSVTRSHKAGLQFPVGR+ARYLKKGR+A+RVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPS 120
           LEYLAAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLGSVTIA+GGV+PKIH S
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 121 LLPKKAGNVKDKAEIGSASQEF 143
           LLPKKAG+ KDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of Sed0027772 vs. ExPASy TrEMBL
Match: A0A6J1L0A1 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111497905 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.1e-63
Identity = 130/142 (91.55%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MSSTDAPAKGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAV 60
           MSSTD PAK GRGKK+A KSVTRSHKAGLQFPVGR+ARYLKKGRYA+RVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKAGRGKKSATKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPS 120
           LEYLAAEVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLGSVTIA+GGV+PKIH S
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 121 LLPKKAGNVKDKAEIGSASQEF 143
           LLPKKAG+ KDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of Sed0027772 vs. ExPASy TrEMBL
Match: A0A6J1GNM4 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456076 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.0e-63
Identity = 128/142 (90.14%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MSSTDAPAKGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAV 60
           MSS D P KGGRGKK+  KSV+RSHKAGLQFPVGR+ARYLKKGRYA+RVGSGSPVYLSAV
Sbjct: 11  MSSNDVPTKGGRGKKSDAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 70

Query: 61  LEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPS 120
           LEYLAAEVLELAGNAARDNKK+RI+PRHIQLAVRNDEELSKLLGSVTIA+GGVMPKIH S
Sbjct: 71  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 130

Query: 121 LLPKKAGNVKDKAEIGSASQEF 143
           LLPKKAGN KDKAEIGSASQEF
Sbjct: 131 LLPKKAGNAKDKAEIGSASQEF 152

[Close]

BLAST of Sed0027772 vs. ExPASy TrEMBL
Match: A0A0A0K525 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390240 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.3e-62
Identity = 128/142 (90.14%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MSSTDAPAKGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAV 60
           MSST+   KGGRGKKA+ KSV+RSHKAGLQFPVGR+ARYLKKGRYA+RVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPS 120
           LEYLAAEVLELAGNAARDNKK+RI+PRHIQLAVRNDEELSKLLGSVTIA+GGVMPKIH S
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNVKDKAEIGSASQEF 143
           LLPKKAGN KDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of Sed0027772 vs. ExPASy TrEMBL
Match: A0A1S3BRH7 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492716 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.0e-62
Identity = 127/142 (89.44%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MSSTDAPAKGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAV 60
           MSST+   KGGRG+KA+ KSV+RSHKAGLQFPVGR+ARYLKKGRYA+RVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPS 120
           LEYLAAEVLELAGNAARDNKK+RI+PRHIQLAVRNDEELSKLLGSVTIA+GGVMPKIH S
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNVKDKAEIGSASQEF 143
           LLPKKAGN KDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of Sed0027772 vs. TAIR 10
Match: AT1G08880.1 (Histone superfamily protein )

HSP 1 Score: 211.1 bits (536), Expect = 5.9e-55
Identity = 110/134 (82.09%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 9   KGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAVLEYLAAEV 68
           KGGRGK  A KSV+RS KAGLQFPVGR+AR+LK G+YA RVG+G+PVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 69  LELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPSLLPKKAGN 128
           LELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLGSVTIANGGV+P IH +LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG- 130

Query: 129 VKDKAEIGSASQEF 143
            K+K +IGSASQEF
Sbjct: 131 -KNKGDIGSASQEF 142

[Close]

BLAST of Sed0027772 vs. TAIR 10
Match: AT1G54690.1 (gamma histone variant H2AX )

HSP 1 Score: 210.7 bits (535), Expect = 7.7e-55
Identity = 110/134 (82.09%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 9   KGGRGKKAAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAVLEYLAAEV 68
           KGGRGK  A KSV+RS KAGLQFPVGR+AR+LK G+YA RVG+G+PVYLSAVLEYLAAEV
Sbjct: 11  KGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 70

Query: 69  LELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPSLLPKKAGN 128
           LELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLGSVTIANGGV+P IH +LLP K G 
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVG- 130

Query: 129 VKDKAEIGSASQEF 143
            K+K +IGSASQEF
Sbjct: 131 -KNKGDIGSASQEF 142

[Close]

BLAST of Sed0027772 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 190.7 bits (483), Expect = 8.3e-49
Identity = 101/128 (78.91%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 11  GRGKK----AAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAVLEYLAA 70
           GRGK     +A K+ TRS KAGLQFPVGR+AR+LKKG+YA RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPSLLPKKA 130
           EVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGVMP IH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

Query: 131 GNVKDKAE 135
           G  K  AE
Sbjct: 123 GASKPSAE 130

[Close]

BLAST of Sed0027772 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-48
Identity = 101/128 (78.91%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 11  GRGKK----AAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAVLEYLAA 70
           GRGK+    AA KS +RS KAGLQFPVGR+AR+LK G+YA RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPSLLPKKA 130
           EVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGVMP IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 131 GNVKDKAE 135
           G+ K   E
Sbjct: 123 GSSKPTEE 130

[Close]

BLAST of Sed0027772 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-48
Identity = 101/128 (78.91%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 11  GRGKK----AAGKSVTRSHKAGLQFPVGRVARYLKKGRYARRVGSGSPVYLSAVLEYLAA 70
           GRGK+    AA KS +RS KAGLQFPVGR+AR+LK G+YA RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGSVTIANGGVMPKIHPSLLPKKA 130
           EVLELAGNAARDNKK+RIVPRHIQLAVRNDEELSKLLG VTIANGGVMP IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 131 GNVKDKAE 135
           G+ K   E
Sbjct: 123 GSSKPTEE 130

The following BLAST results are available for this feature:

BLAST of Sed0027772 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896926.1	8.6e-64	92.25	histone H2AX-like [Benincasa hispida]	[more]
KAG7025548.1	1.1e-63	92.25	hypothetical protein SDJN02_12044 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022960479.1	1.5e-63	91.55	histone H2AX-like [Cucurbita moschata]	[more]
KAG6575875.1	2.5e-63	90.85	Histone H2AX, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023548483.1	4.3e-63	90.14	histone H2AX-like [Cucurbita pepo subsp. pepo] >XP_023548484.1 histone H2AX-like...	[more]

BLAST of Sed0027772 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65759	7.6e-55	81.69	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
P35063	2.2e-54	82.22	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
O04848	8.3e-54	82.09	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
Q9S9K7	1.1e-53	82.09	Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1	[more]
A2ZL69	2.4e-53	79.14	Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3...	[more]

BLAST of Sed0027772 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HB52	7.1e-64	91.55	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111461202 PE=3 SV=1	[more]
A0A6J1L0A1	2.1e-63	91.55	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111497905 PE=3 SV=1	[more]
A0A6J1GNM4	6.0e-63	90.14	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456076 PE=3 SV=1	[more]
A0A0A0K525	1.3e-62	90.14	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390240 PE=3 SV=1	[more]
A0A1S3BRH7	3.0e-62	89.44	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492716 PE=3 SV=1	[more]

BLAST of Sed0027772 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08880.1	5.9e-55	82.09	Histone superfamily protein	[more]
AT1G54690.1	7.7e-55	82.09	gamma histone variant H2AX	[more]
AT1G51060.1	8.3e-49	78.91	histone H2A 10	[more]
AT4G27230.1	1.1e-48	78.91	histone H2A 2	[more]
AT4G27230.2	1.1e-48	78.91	histone H2A 2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 105..123 score: 62.86 coord: 63..76 score: 89.46 coord: 77..91 score: 75.81 coord: 19..41 score: 68.03 coord: 48..63 score: 75.0
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 8..128 e-value: 1.7E-74 score: 263.5
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 13..125 e-value: 2.10574E-67 score: 197.943
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 7..134 e-value: 3.8E-62 score: 209.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 22..125
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 3..94 e-value: 5.1E-15 score: 56.0
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 97..129 e-value: 2.6E-17 score: 62.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 7..140
None	No IPR available	PANTHER	PTHR23430:SF207	HISTONE H2A	coord: 7..140
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 27..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027772.1	Sed0027772.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity