Sed0026684 (gene) Chayote v1

Overview
NameSed0026684
Typegene
OrganismSechium edule (Chayote v1)
DescriptionCYSTM domain-containing protein
LocationLG06: 45241315 .. 45243191 (+)
RNA-Seq ExpressionSed0026684
SyntenySed0026684
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCAAATAGATCAGAAAATGAAAGAAAATTACAGGTAGCAATGGCGGAAAGAGCAGCGCCTCGAGAACAAACGATGTCGTACTATGATCATGTCCAGAAACGTAGGGAAGACGAAGGCTGTCTCTATGCTTGGTATGTTTCCGCTTATGTTTTCTTTTAACTTCTAATCATATAATCTCTCTCATAAACGTATTAGAATTTGTTCCTACGAAGCGGTCTCGTTGATAGAGGTTTATGGTACTATCTTGGTCATACCGACTTAGAAATTCTAAGTTCGAGCCTTCAAGTGATTTAATGATAAAATTCTCTATTGTCTCTCGAGTCTGTTTTGGGATGGACGCGTACACTTTAAAAGCAATATATAATGTCAAATGGGAAAAATGAACGGCTCTTATTTTCTAATCATAAAACAACTTAATCATGATTAATTCTATGTGGGGAAAAGGAAATCGGTTGCTTTGATTTATTTGTCAACTACTGTAAAGTTTTGTTAAATGGAGTTGGGAACGTTTAGATATCACTTGAGCTCATTAAAAAAAAAAGTCAATAAATATTTAATAATTTAAAGGTTTTTTAGGTACAATAAAGATTTGTGGGATTCGAACCATAGATCTTATAGTTTCTAATATTTTAAAAGTTAATGATTCAATCTAAAATTTTCTTCGAAAAAATAAAAATATGTAAAATATATAGAATACATATCTAAAACATCGAATAAAACTAACTAAGGCTAGTCAACAAGAGTTAAGCTTATTTGGTATGATAAATGACATAGTTACAATGACATTATGAATTTGAATCTTCAGTCTCAAATATTATCAAATTAAAAAAAAAAAAAAAAAACCAAACGAATGATTTTTTTTTATTTTTTATTTATTTTTTTTTTTTTTGAGAATGAAACAAATGGGAATTGAAGAAAGCTCTTAATTAAATTAGTTGAAATACTCGAAGCTAACAAGCTTACGCACATAAGTGTATATCTTTATTCAAGAGATCATTCAATTCGAAACTTTTCATCTCTAATCATTGTTGAACTCAATATATATATATATATATATATATTTTCTCTGATATTAAAAAAGTCGATATCTAAACATACTTTCATCAGCTAATTCTTTTTTTCTCCTAATGAACATAAATTTGTTTTCATCGAGGAATTATTGCAATGAATCACCCACATCCTTTTTTCTTTTTTTTTGAAATTCACCCACATCCATTTTAATCTATACGAAAATATCTCCCAACAAACATATAGGCGGTACATATCTTGAAATACAAATGTTTTCAAAAGATGAATTAGTGATCTCATAGCCATTTTATCAATGATCTCAATGGTGGCATAGTGTAATTGATTAAAACATTATATATCGACCAAAAGATCAAATGTTTGAATTTATACGGTCCGTGAAATGTATTTATGACAGTTATTCAATGTCATGAAATCTAGAAATTATAATAGTGAAAAGAAATTTCTCAAACGTATGTTTTATTTATTATTATTTTTTTTCTAATTAGACAATCTCATATTTATTTATTTTAATTTTTGTTTGATTGAAATAGTTTGTTTACATTGTGTTGCTGTTGTTGCTGCTATGAGACTTGTGAGTGTTGTGTGGATGGCATATGTTGCTGCTGCTGATCTTAACTCTGGCCCTCTCAAATGATTCAAATCAATTGCTATGGCTTCTCAAATTGTATTTTCTGGTTTTTTTTTTAATCTTCAGTTACTTAACCAAAATGATTAAGCTCATCATATATGTTGATTGATTTAATGTTTCTACAAATCTATTAACTCCATCTTGAAATAAGTTCTTGACTTGTGAGGGTCACTCTGTTGAAATATCTTGAATTATGTTGTACTACGAATACTCCGGAC

mRNA sequence

ATTCAAATAGATCAGAAAATGAAAGAAAATTACAGGTAGCAATGGCGGAAAGAGCAGCGCCTCGAGAACAAACGATGTCGTACTATGATCATGTCCAGAAACGTAGGGAAGACGAAGGCTGTCTCTATGCTTGTTTGTTTACATTGTGTTGCTGTTGTTGCTGCTATGAGACTTGTGAGTGTTGTGTGGATGGCATATGTTGCTGCTGCTGATCTTAACTCTGGCCCTCTCAAATGATTCAAATCAATTGCTATGGCTTCTCAAATTGTATTTTCTGGTTTTTTTTTTAATCTTCAGTTACTTAACCAAAATGATTAAGCTCATCATATATGTTGATTGATTTAATGTTTCTACAAATCTATTAACTCCATCTTGAAATAAGTTCTTGACTTGTGAGGGTCACTCTGTTGAAATATCTTGAATTATGTTGTACTACGAATACTCCGGAC

Coding sequence (CDS)

ATGGCGGAAAGAGCAGCGCCTCGAGAACAAACGATGTCGTACTATGATCATGTCCAGAAACGTAGGGAAGACGAAGGCTGTCTCTATGCTTGTTTGTTTACATTGTGTTGCTGTTGTTGCTGCTATGAGACTTGTGAGTGTTGTGTGGATGGCATATGTTGCTGCTGCTGA

Protein sequence

MAERAAPREQTMSYYDHVQKRREDEGCLYACLFTLCCCCCCYETCECCVDGICCCC
Homology
[Close]
BLAST of Sed0026684 vs. NCBI nr
Match: XP_008447486.1 (PREDICTED: uncharacterized protein LOC103489923 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 2.8e-18
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MAERAAPREQTMSYYDHVQKRREDEGCLYACLFTLCCCCCCYETCECCVDGICCCC 57
          MA  AAP+EQ MSYYDH+QKRRED+GCLYA LFTLCCCCCCYETCECCVDG+CCCC
Sbjct: 6  MAVAAAPQEQMMSYYDHIQKRREDKGCLYAFLFTLCCCCCCYETCECCVDGVCCCC 61

[Close]
BLAST of Sed0026684 vs. NCBI nr
Match: KAF8026809.1 (hypothetical protein BT93_F3328 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 0 

Query: 6  APREQTMSYYDHVQKRREDEGCLYACLFTLCCCCCCYETCECCVDGICCCC 57
          AP  Q MSY+DHVQ+RRE++GCLYACLFTLCCCCCC+ETCECC++ ICCCC
Sbjct: 4  APAAQEMSYFDHVQRRREEKGCLYACLFTLCCCCCCFETCECCLESICCCC 54

[Close]
BLAST of Sed0026684 vs. NCBI nr
Match: PNT71701.1 (hypothetical protein BRADI_2g34048v3 [Brachypodium distachyon])

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 7  PREQTMSYYDHVQKRREDEGCLYACLFTLCCCCCCYETCECCVDGICCC 56
          P  Q MSYYDHVQKR ED+GCLYACLFTLCCC CCYETCECCV+ +CCC
Sbjct: 5  PSAQDMSYYDHVQKRHEDKGCLYACLFTLCCCFCCYETCECCVETLCCC 53

[Close]
BLAST of Sed0026684 vs. NCBI nr
Match: KAG2616739.1 (hypothetical protein PVAP13_3NG249879 [Panicum virgatum])

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 7  PREQTMSYYDHVQKRREDEGCLYACLFTLCCCCCCYETCECCVDGICCCC 57
          P  Q MSYYDHVQKR E++GCLYACLFTLCCC CCYETCECC++ ICCCC
Sbjct: 5  PSTQEMSYYDHVQKRHEEKGCLYACLFTLCCCFCCYETCECCIETICCCC 54

[Close]
BLAST of Sed0026684 vs. NCBI nr
Match: KAG2624952.1 (hypothetical protein PVAP13_3KG183300 [Panicum virgatum])

HSP 1 Score: 84.7 bits (208), Expect = 2.7e-13
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 7  PREQTMSYYDHVQKRREDEGCLYACLFTLCCCCCCYETCECCVDGICCCC 57
          P  Q MSYYDHVQKR E++GCLYACLFTLCCC CCYETCECC++ ICCCC
Sbjct: 27 PSAQEMSYYDHVQKRHEEKGCLYACLFTLCCCFCCYETCECCLETICCCC 76

[Close]
BLAST of Sed0026684 vs. ExPASy TrEMBL
Match: A0A1S3BHJ9 (uncharacterized protein LOC103489923 OS=Cucumis melo OX=3656 GN=LOC103489923 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MAERAAPREQTMSYYDHVQKRREDEGCLYACLFTLCCCCCCYETCECCVDGICCCC 57
          MA  AAP+EQ MSYYDH+QKRRED+GCLYA LFTLCCCCCCYETCECCVDG+CCCC
Sbjct: 6  MAVAAAPQEQMMSYYDHIQKRREDKGCLYAFLFTLCCCCCCYETCECCVDGVCCCC 61

[Close]
BLAST of Sed0026684 vs. ExPASy TrEMBL
Match: A0A2K2DBP9 (CYSTM domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g34048v3 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.9e-14
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 7  PREQTMSYYDHVQKRREDEGCLYACLFTLCCCCCCYETCECCVDGICCC 56
          P  Q MSYYDHVQKR ED+GCLYACLFTLCCC CCYETCECCV+ +CCC
Sbjct: 5  PSAQDMSYYDHVQKRHEDKGCLYACLFTLCCCFCCYETCECCVETLCCC 53

[Close]
BLAST of Sed0026684 vs. ExPASy TrEMBL
Match: A0A3L6T0N9 (Cadmium tolerant 1 OS=Panicum miliaceum OX=4540 GN=C2845_PM05G13760 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 7  PREQTMSYYDHVQKRREDEGCLYACLFTLCCCCCCYETCECCVDGICCCC 57
          P  Q MSYYDHVQKR E++GCLYACLFTLCCC CCYETCECC++ ICCCC
Sbjct: 5  PSAQEMSYYDHVQKRHEEKGCLYACLFTLCCCFCCYETCECCLETICCCC 54

[Close]
BLAST of Sed0026684 vs. ExPASy TrEMBL
Match: A0A2T7E8U3 (CYSTM domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G129700 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 7  PREQTMSYYDHVQKRREDEGCLYACLFTLCCCCCCYETCECCVDGICCCC 57
          P  Q MSYYDHVQKR E++GCLYACLFTLCCC CCYETCECC++ ICCCC
Sbjct: 5  PSAQEMSYYDHVQKRHEEKGCLYACLFTLCCCFCCYETCECCLETICCCC 54

[Close]
BLAST of Sed0026684 vs. ExPASy TrEMBL
Match: A0A2T8KI25 (CYSTM domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_3G138100 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 7  PREQTMSYYDHVQKRREDEGCLYACLFTLCCCCCCYETCECCVDGICCCC 57
          P  Q MSYYDHVQKR E++GCLYACLFTLCCC CCYETCECC++ ICCCC
Sbjct: 5  PSAQEMSYYDHVQKRHEEKGCLYACLFTLCCCFCCYETCECCLETICCCC 54

[Close]
BLAST of Sed0026684 vs. TAIR 10
Match: AT1G52827.1 (cadmium tolerance 1 )

HSP 1 Score: 57.8 bits (138), Expect = 3.3e-09
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 6  APREQTMSYYDHVQKRREDEGCLYACLFTLCCCCCCYETCECCVDGICCC 56
          AP +Q M+YYD+V+KR++++GCL+A  + L CCCCCYE C+CC    CCC
Sbjct: 3  APPQQEMTYYDNVKKRQDEQGCLFATFYALFCCCCCYEKCKCC----CCC 48

The following BLAST results are available for this feature:
BLAST of Sed0026684 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008447486.12.8e-1885.71PREDICTED: uncharacterized protein LOC103489923 [Cucumis melo][more]
KAF8026809.11.1e-1478.43hypothetical protein BT93_F3328 [Corymbia citriodora subsp. variegata][more]
PNT71701.11.2e-1381.63hypothetical protein BRADI_2g34048v3 [Brachypodium distachyon][more]
KAG2616739.11.6e-1380.00hypothetical protein PVAP13_3NG249879 [Panicum virgatum][more]
KAG2624952.12.7e-1380.00hypothetical protein PVAP13_3KG183300 [Panicum virgatum][more]
BLAST of Sed0026684 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0026684 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BHJ91.4e-1885.71uncharacterized protein LOC103489923 OS=Cucumis melo OX=3656 GN=LOC103489923 PE=... [more]
A0A2K2DBP95.9e-1481.63CYSTM domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_2g3... [more]
A0A3L6T0N91.3e-1380.00Cadmium tolerant 1 OS=Panicum miliaceum OX=4540 GN=C2845_PM05G13760 PE=3 SV=1[more]
A0A2T7E8U31.3e-1380.00CYSTM domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55... [more]
A0A2T8KI251.3e-1380.00CYSTM domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_3G138100 PE... [more]
BLAST of Sed0026684 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G52827.13.3e-0956.00cadmium tolerance 1 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028144Cysteine-rich transmembrane CYSTM domainPFAMPF12734CYSTMcoord: 11..45
e-value: 6.1E-9
score: 36.0
NoneNo IPR availablePANTHERPTHR35470CADMIUM TOLERANT 3coord: 5..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0026684.1Sed0026684.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus