Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCACGGGAAGGTCGTTGCTTATGCTTCCCGTCAGCTGAAGCCATTTGAGCAGAACTATCCGACTCATGATATGGAGTTGGCGGCAGTGGTGTTTGCTGATCAAGATTTGGAGGCACTACCGTATGGTGAGCGGATCCAGATGTTTACCGATCACCGAGCCTCAAGTATCTGCTTTACTCGTAGGAGTTGAATATGAGACAATGCGGAGATGGTTAGAGTTAGTGAAAGATTATGACTGCGAGATTCTGTACCATCCTGGTAAAGCCAATGTGGTAGCCGATGCCCTGAGTAGGAAGACGTCGCACTCTGCGGTGTTGTTGAGCTCCTAGCCCAGATTACGGAGAGAGTTCGAGCCACCGAGATTGCGATGTTGTTGGGTGAGGTTCTTGCCAGAGTGGCTCGATGGATATCCGACCATCGATTAGACAAATGGATTATTGATAGTCACCGAGTGACCCGCACTTAAAAGATTATTTGACAAAGTTAGTGCTGATGGAGATTTTGATTTTGTGTACTCACCAGACGGTGGGCTGGCGTACAGAGGTCGGTTGTGTGTTCCGGATGTTGCAGGATTGCGAGCAGAGTTGCTCTCAGAGGCCCACAGTTCTCCGTTTGCTTGGCACCCCGGGGGTACCAAGATGTATCAGGATCTTAAGCAGACATTCTGGTGGATGGGTATGAAAAGAGATGTTGCGGAGTTTGTCAGTCGATGTCTCACTTGTCAGCAAGTGAAGGCACCCAGGCAGAGACCAGCCGGCCGCTGA
mRNA sequence
ATGCAGCACGGGAAGGTCGTTGCTTATGCTTCCCGTCAGCTGAAGCCATTTGAGCAGAACTATCCGACTCATGATATGGAGTTGGCGGCAGTGGTGTTTGCTGATCAAGATTTGGAGGCACTACCGTATGGTGAGCGGATCCAGATGTTTACCGATCACCGAGCCTCAAACGGTGGGCTGGCGTACAGAGGTCGGTTGTGTGTTCCGGATGTTGCAGGATTGCGAGCAGAGTTGCTCTCAGAGGCCCACAGTTCTCCGTTTGCTTGGCACCCCGGGGGTACCAAGATGTATCAGGATCTTAAGCAGACATTCTGGTGGATGGGTATGAAAAGAGATGTTGCGGAGTTTGTCAGTCGATGTCTCACTTGTCAGCAAGTGAAGGCACCCAGGCAGAGACCAGCCGGCCGCTGA
Coding sequence (CDS)
ATGCAGCACGGGAAGGTCGTTGCTTATGCTTCCCGTCAGCTGAAGCCATTTGAGCAGAACTATCCGACTCATGATATGGAGTTGGCGGCAGTGGTGTTTGCTGATCAAGATTTGGAGGCACTACCGTATGGTGAGCGGATCCAGATGTTTACCGATCACCGAGCCTCAAACGGTGGGCTGGCGTACAGAGGTCGGTTGTGTGTTCCGGATGTTGCAGGATTGCGAGCAGAGTTGCTCTCAGAGGCCCACAGTTCTCCGTTTGCTTGGCACCCCGGGGGTACCAAGATGTATCAGGATCTTAAGCAGACATTCTGGTGGATGGGTATGAAAAGAGATGTTGCGGAGTTTGTCAGTCGATGTCTCACTTGTCAGCAAGTGAAGGCACCCAGGCAGAGACCAGCCGGCCGCTGA
Protein sequence
MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHRASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRPAGR
Homology
BLAST of Sed0025830 vs. NCBI nr
Match:
XP_042019055.1 (uncharacterized protein LOC121766889, partial [Salvia splendens])
HSP 1 Score: 169.5 bits (428), Expect = 2.0e-38
Identity = 83/140 (59.29%), Postives = 99/140 (70.71%), Query Frame = 0
Query: 1 MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHRASNGGL 60
MQ GKV+AYASRQLKP E NYPTHD+ELAAVV A + YG R +++TDH++
Sbjct: 311 MQKGKVIAYASRQLKPHELNYPTHDLELAAVVHALKIWRHHLYGVRCEIYTDHKSLKYFF 370
Query: 61 AYR----GRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEF 120
+ GRLCVP GLR E++ EAH +P+A HPG TKMYQDLK+ FWW GMK+ VA F
Sbjct: 371 EQKELNMGRLCVPKDEGLRMEIMREAHETPYAAHPGSTKMYQDLKRQFWWNGMKKHVAAF 430
Query: 121 VSRCLTCQQVKAPRQRPAGR 137
V RCL CQQVKA QRP G+
Sbjct: 431 VERCLACQQVKALHQRPYGK 450
BLAST of Sed0025830 vs. NCBI nr
Match:
KAA0060263.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ95994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 167.9 bits (424), Expect = 5.9e-38
Identity = 91/210 (43.33%), Postives = 112/210 (53.33%), Query Frame = 0
Query: 1 MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR------ 60
MQ GKVVAYASRQLK E NYPTHD+ELAAVVFA + YGE+IQ+FTDH+
Sbjct: 611 MQQGKVVAYASRQLKSHEHNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 670
Query: 61 ------------------------------------------------------------ 120
Sbjct: 671 TKKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKKIIDAQSNDPNLVEKRGLAE 730
Query: 121 ---------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFW 136
+S+GGL + GRLC+P + ++ +LLSEAHSSPF+ HPG TKMYQ+LK+ +W
Sbjct: 731 AGQAVKFFISSDGGLLFEGRLCMPSDSAVKTKLLSEAHSSPFSMHPGSTKMYQNLKRVYW 790
BLAST of Sed0025830 vs. NCBI nr
Match:
KAA0047194.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 167.5 bits (423), Expect = 7.7e-38
Identity = 92/177 (51.98%), Postives = 106/177 (59.89%), Query Frame = 0
Query: 1 MQHGKVVAYASRQLKPFEQNYPTHDMELAAV-----VFADQDLEAL-------------- 60
MQ GKVVAYASRQLK EQNYPTHD+ELAAV + D D E L
Sbjct: 1023 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVRRWLELVKDYDCEILYHPGKANVVADALS 1082
Query: 61 ----------------PY-------GERIQMFTDHRASNGGLAYRGRLCVPDVAGLRAEL 120
PY E Q+ +S+GGL + RLCVP + ++ EL
Sbjct: 1083 RKPTLRQRIIDAQSNDPYLVEKRGLAEAGQVVEFSLSSDGGLLFERRLCVPSDSAVKTEL 1142
Query: 121 LSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRPAG 136
LSEAHSSPF+ HPG TKMYQDLK+ +WW MKR+VAEFVSRCL CQQVKAPRQ+PAG
Sbjct: 1143 LSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAG 1199
BLAST of Sed0025830 vs. NCBI nr
Match:
KAA0053234.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 167.5 bits (423), Expect = 7.7e-38
Identity = 95/222 (42.79%), Postives = 111/222 (50.00%), Query Frame = 0
Query: 1 MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR------ 60
MQ GKVVAYASRQLK EQNYPTHD+ELAAVVFA + YGE+IQ+FTDH+
Sbjct: 878 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 937
Query: 61 ------------------------------------------------------------ 120
Sbjct: 938 TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKLAQLTVQPTLRQRIIDAQSN 997
Query: 121 ---------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGG 136
+S+GGL + RLCVP ++ ELLSEAHSSPF+ HPG
Sbjct: 998 DPYLVEKRGLAETRQAVEFSLSSDGGLLFERRLCVPSDRAVKTELLSEAHSSPFSMHPGS 1057
BLAST of Sed0025830 vs. NCBI nr
Match:
KAA0042188.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 167.2 bits (422), Expect = 1.0e-37
Identity = 95/225 (42.22%), Postives = 112/225 (49.78%), Query Frame = 0
Query: 1 MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR------ 60
MQ GKVVAYASRQLK EQNYPTHD+ELAAVVFA + YGE+IQ+FTDH+
Sbjct: 761 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKCFF 820
Query: 61 ------------------------------------------------------------ 120
Sbjct: 821 TQKELNMRQRRWLELVKDYDCEILYHPSKRAEIAVSVGAVTMQLAQLTVQPTLRQRIIDA 880
Query: 121 ------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWH 136
+S+GGL + RLCVP + ++ ELLSEAHSSPF+ H
Sbjct: 881 QSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH 940
BLAST of Sed0025830 vs. ExPASy Swiss-Prot
Match:
O93209 (Pro-Pol polyprotein OS=Feline foamy virus OX=53182 GN=pol PE=3 SV=1)
HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 33/114 (28.95%), Postives = 55/114 (48.25%), Query Frame = 0
Query: 22 PTHDMELAAVVFADQDLEALPYGERIQMFTDHRASNGGLAYR--GRLCVPDVAGLRAELL 81
P D+E + A Q+ E LP G Q +T +N + R G +P + R +L+
Sbjct: 753 PKLDIEQIKAIQACQNNERLPVGYPKQ-YTYELQNNKCMVLRKDGWREIPP-SRERYKLI 812
Query: 82 SEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRP 134
EAH+ H G + +++ +WW MK+D++ F+S C C+ V +P
Sbjct: 813 KEAHNIS---HAGREAVLLKIQENYWWPKMKKDISSFLSTCNVCKMVNPLNLKP 861
BLAST of Sed0025830 vs. ExPASy Swiss-Prot
Match:
G5E8B9 (Zinc finger and BTB domain-containing protein 11 OS=Mus musculus OX=10090 GN=Zbtb11 PE=2 SV=1)
HSP 1 Score: 47.4 bits (111), Expect = 1.5e-04
Identity = 20/59 (33.90%), Postives = 32/59 (54.24%), Query Frame = 0
Query: 75 RAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRP 134
R L+ AH P H + + DL +T+WW G+ + V +++ +C CQ+ K R RP
Sbjct: 71 RQGLIEAAHLGPGGTHHTRHQTWHDLSKTYWWRGILKQVKDYIKQCSKCQE-KLDRSRP 128
BLAST of Sed0025830 vs. ExPASy TrEMBL
Match:
A0A5A7UWA4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1661G00100 PE=4 SV=1)
HSP 1 Score: 167.9 bits (424), Expect = 2.9e-38
Identity = 91/210 (43.33%), Postives = 112/210 (53.33%), Query Frame = 0
Query: 1 MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR------ 60
MQ GKVVAYASRQLK E NYPTHD+ELAAVVFA + YGE+IQ+FTDH+
Sbjct: 611 MQQGKVVAYASRQLKSHEHNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 670
Query: 61 ------------------------------------------------------------ 120
Sbjct: 671 TKKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKKIIDAQSNDPNLVEKRGLAE 730
Query: 121 ---------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFW 136
+S+GGL + GRLC+P + ++ +LLSEAHSSPF+ HPG TKMYQ+LK+ +W
Sbjct: 731 AGQAVKFFISSDGGLLFEGRLCMPSDSAVKTKLLSEAHSSPFSMHPGSTKMYQNLKRVYW 790
BLAST of Sed0025830 vs. ExPASy TrEMBL
Match:
A0A5A7UDB1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00190 PE=4 SV=1)
HSP 1 Score: 167.5 bits (423), Expect = 3.7e-38
Identity = 95/222 (42.79%), Postives = 111/222 (50.00%), Query Frame = 0
Query: 1 MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR------ 60
MQ GKVVAYASRQLK EQNYPTHD+ELAAVVFA + YGE+IQ+FTDH+
Sbjct: 878 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 937
Query: 61 ------------------------------------------------------------ 120
Sbjct: 938 TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKLAQLTVQPTLRQRIIDAQSN 997
Query: 121 ---------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGG 136
+S+GGL + RLCVP ++ ELLSEAHSSPF+ HPG
Sbjct: 998 DPYLVEKRGLAETRQAVEFSLSSDGGLLFERRLCVPSDRAVKTELLSEAHSSPFSMHPGS 1057
BLAST of Sed0025830 vs. ExPASy TrEMBL
Match:
A0A5A7TW65 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold83G00760 PE=4 SV=1)
HSP 1 Score: 167.5 bits (423), Expect = 3.7e-38
Identity = 92/177 (51.98%), Postives = 106/177 (59.89%), Query Frame = 0
Query: 1 MQHGKVVAYASRQLKPFEQNYPTHDMELAAV-----VFADQDLEAL-------------- 60
MQ GKVVAYASRQLK EQNYPTHD+ELAAV + D D E L
Sbjct: 1023 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVRRWLELVKDYDCEILYHPGKANVVADALS 1082
Query: 61 ----------------PY-------GERIQMFTDHRASNGGLAYRGRLCVPDVAGLRAEL 120
PY E Q+ +S+GGL + RLCVP + ++ EL
Sbjct: 1083 RKPTLRQRIIDAQSNDPYLVEKRGLAEAGQVVEFSLSSDGGLLFERRLCVPSDSAVKTEL 1142
Query: 121 LSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRPAG 136
LSEAHSSPF+ HPG TKMYQDLK+ +WW MKR+VAEFVSRCL CQQVKAPRQ+PAG
Sbjct: 1143 LSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAG 1199
BLAST of Sed0025830 vs. ExPASy TrEMBL
Match:
A0A5A7TH91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006830 PE=4 SV=1)
HSP 1 Score: 167.2 bits (422), Expect = 4.9e-38
Identity = 95/225 (42.22%), Postives = 112/225 (49.78%), Query Frame = 0
Query: 1 MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR------ 60
MQ GKVVAYASRQLK EQNYPTHD+ELAAVVFA + YGE+IQ+FTDH+
Sbjct: 761 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKCFF 820
Query: 61 ------------------------------------------------------------ 120
Sbjct: 821 TQKELNMRQRRWLELVKDYDCEILYHPSKRAEIAVSVGAVTMQLAQLTVQPTLRQRIIDA 880
Query: 121 ------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWH 136
+S+GGL + RLCVP + ++ ELLSEAHSSPF+ H
Sbjct: 881 QSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH 940
BLAST of Sed0025830 vs. ExPASy TrEMBL
Match:
A0A5A7UC07 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00040 PE=4 SV=1)
HSP 1 Score: 167.2 bits (422), Expect = 4.9e-38
Identity = 95/222 (42.79%), Postives = 111/222 (50.00%), Query Frame = 0
Query: 1 MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR------ 60
MQ GKVVAYASRQLK EQ YPTHD+ELAAVVFA + YGE+IQ+FTDH+
Sbjct: 1011 MQQGKVVAYASRQLKSHEQKYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 1070
Query: 61 ------------------------------------------------------------ 120
Sbjct: 1071 THKELNIRQRRWLELVKDYDCEILYHPGKANVVADALSRKLAQLTVQPTLTQRIIDAQSN 1130
Query: 121 ---------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGG 136
+S+GGL + RLCVP + ++ ELLSEAHSSPF+ HPG
Sbjct: 1131 DPYLVKKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGS 1190
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_042019055.1 | 2.0e-38 | 59.29 | uncharacterized protein LOC121766889, partial [Salvia splendens] | [more] |
KAA0060263.1 | 5.9e-38 | 43.33 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ95994.1 ty3-gyp... | [more] |
KAA0047194.1 | 7.7e-38 | 51.98 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
KAA0053234.1 | 7.7e-38 | 42.79 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
KAA0042188.1 | 1.0e-37 | 42.22 | pol protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
O93209 | 1.2e-04 | 28.95 | Pro-Pol polyprotein OS=Feline foamy virus OX=53182 GN=pol PE=3 SV=1 | [more] |
G5E8B9 | 1.5e-04 | 33.90 | Zinc finger and BTB domain-containing protein 11 OS=Mus musculus OX=10090 GN=Zbt... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7UWA4 | 2.9e-38 | 43.33 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16... | [more] |
A0A5A7UDB1 | 3.7e-38 | 42.79 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10... | [more] |
A0A5A7TW65 | 3.7e-38 | 51.98 | DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... | [more] |
A0A5A7TH91 | 4.9e-38 | 42.22 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... | [more] |
A0A5A7UC07 | 4.9e-38 | 42.79 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... | [more] |
Match Name | E-value | Identity | Description | |