Sed0025830 (gene) Chayote v1

Overview
NameSed0025830
Typegene
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase
LocationLG07: 32852177 .. 32852945 (+)
RNA-Seq ExpressionSed0025830
SyntenySed0025830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCACGGGAAGGTCGTTGCTTATGCTTCCCGTCAGCTGAAGCCATTTGAGCAGAACTATCCGACTCATGATATGGAGTTGGCGGCAGTGGTGTTTGCTGATCAAGATTTGGAGGCACTACCGTATGGTGAGCGGATCCAGATGTTTACCGATCACCGAGCCTCAAGTATCTGCTTTACTCGTAGGAGTTGAATATGAGACAATGCGGAGATGGTTAGAGTTAGTGAAAGATTATGACTGCGAGATTCTGTACCATCCTGGTAAAGCCAATGTGGTAGCCGATGCCCTGAGTAGGAAGACGTCGCACTCTGCGGTGTTGTTGAGCTCCTAGCCCAGATTACGGAGAGAGTTCGAGCCACCGAGATTGCGATGTTGTTGGGTGAGGTTCTTGCCAGAGTGGCTCGATGGATATCCGACCATCGATTAGACAAATGGATTATTGATAGTCACCGAGTGACCCGCACTTAAAAGATTATTTGACAAAGTTAGTGCTGATGGAGATTTTGATTTTGTGTACTCACCAGACGGTGGGCTGGCGTACAGAGGTCGGTTGTGTGTTCCGGATGTTGCAGGATTGCGAGCAGAGTTGCTCTCAGAGGCCCACAGTTCTCCGTTTGCTTGGCACCCCGGGGGTACCAAGATGTATCAGGATCTTAAGCAGACATTCTGGTGGATGGGTATGAAAAGAGATGTTGCGGAGTTTGTCAGTCGATGTCTCACTTGTCAGCAAGTGAAGGCACCCAGGCAGAGACCAGCCGGCCGCTGA

mRNA sequence

ATGCAGCACGGGAAGGTCGTTGCTTATGCTTCCCGTCAGCTGAAGCCATTTGAGCAGAACTATCCGACTCATGATATGGAGTTGGCGGCAGTGGTGTTTGCTGATCAAGATTTGGAGGCACTACCGTATGGTGAGCGGATCCAGATGTTTACCGATCACCGAGCCTCAAACGGTGGGCTGGCGTACAGAGGTCGGTTGTGTGTTCCGGATGTTGCAGGATTGCGAGCAGAGTTGCTCTCAGAGGCCCACAGTTCTCCGTTTGCTTGGCACCCCGGGGGTACCAAGATGTATCAGGATCTTAAGCAGACATTCTGGTGGATGGGTATGAAAAGAGATGTTGCGGAGTTTGTCAGTCGATGTCTCACTTGTCAGCAAGTGAAGGCACCCAGGCAGAGACCAGCCGGCCGCTGA

Coding sequence (CDS)

ATGCAGCACGGGAAGGTCGTTGCTTATGCTTCCCGTCAGCTGAAGCCATTTGAGCAGAACTATCCGACTCATGATATGGAGTTGGCGGCAGTGGTGTTTGCTGATCAAGATTTGGAGGCACTACCGTATGGTGAGCGGATCCAGATGTTTACCGATCACCGAGCCTCAAACGGTGGGCTGGCGTACAGAGGTCGGTTGTGTGTTCCGGATGTTGCAGGATTGCGAGCAGAGTTGCTCTCAGAGGCCCACAGTTCTCCGTTTGCTTGGCACCCCGGGGGTACCAAGATGTATCAGGATCTTAAGCAGACATTCTGGTGGATGGGTATGAAAAGAGATGTTGCGGAGTTTGTCAGTCGATGTCTCACTTGTCAGCAAGTGAAGGCACCCAGGCAGAGACCAGCCGGCCGCTGA

Protein sequence

MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHRASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRPAGR
Homology
BLAST of Sed0025830 vs. NCBI nr
Match: XP_042019055.1 (uncharacterized protein LOC121766889, partial [Salvia splendens])

HSP 1 Score: 169.5 bits (428), Expect = 2.0e-38
Identity = 83/140 (59.29%), Postives = 99/140 (70.71%), Query Frame = 0

Query: 1   MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHRASNGGL 60
           MQ GKV+AYASRQLKP E NYPTHD+ELAAVV A +      YG R +++TDH++     
Sbjct: 311 MQKGKVIAYASRQLKPHELNYPTHDLELAAVVHALKIWRHHLYGVRCEIYTDHKSLKYFF 370

Query: 61  AYR----GRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEF 120
             +    GRLCVP   GLR E++ EAH +P+A HPG TKMYQDLK+ FWW GMK+ VA F
Sbjct: 371 EQKELNMGRLCVPKDEGLRMEIMREAHETPYAAHPGSTKMYQDLKRQFWWNGMKKHVAAF 430

Query: 121 VSRCLTCQQVKAPRQRPAGR 137
           V RCL CQQVKA  QRP G+
Sbjct: 431 VERCLACQQVKALHQRPYGK 450

BLAST of Sed0025830 vs. NCBI nr
Match: KAA0060263.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ95994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 5.9e-38
Identity = 91/210 (43.33%), Postives = 112/210 (53.33%), Query Frame = 0

Query: 1   MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR------ 60
           MQ GKVVAYASRQLK  E NYPTHD+ELAAVVFA +      YGE+IQ+FTDH+      
Sbjct: 611 MQQGKVVAYASRQLKSHEHNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 670

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 671 TKKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKKIIDAQSNDPNLVEKRGLAE 730

Query: 121 ---------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFW 136
                    +S+GGL + GRLC+P  + ++ +LLSEAHSSPF+ HPG TKMYQ+LK+ +W
Sbjct: 731 AGQAVKFFISSDGGLLFEGRLCMPSDSAVKTKLLSEAHSSPFSMHPGSTKMYQNLKRVYW 790

BLAST of Sed0025830 vs. NCBI nr
Match: KAA0047194.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 7.7e-38
Identity = 92/177 (51.98%), Postives = 106/177 (59.89%), Query Frame = 0

Query: 1    MQHGKVVAYASRQLKPFEQNYPTHDMELAAV-----VFADQDLEAL-------------- 60
            MQ GKVVAYASRQLK  EQNYPTHD+ELAAV     +  D D E L              
Sbjct: 1023 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVRRWLELVKDYDCEILYHPGKANVVADALS 1082

Query: 61   ----------------PY-------GERIQMFTDHRASNGGLAYRGRLCVPDVAGLRAEL 120
                            PY        E  Q+     +S+GGL +  RLCVP  + ++ EL
Sbjct: 1083 RKPTLRQRIIDAQSNDPYLVEKRGLAEAGQVVEFSLSSDGGLLFERRLCVPSDSAVKTEL 1142

Query: 121  LSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRPAG 136
            LSEAHSSPF+ HPG TKMYQDLK+ +WW  MKR+VAEFVSRCL CQQVKAPRQ+PAG
Sbjct: 1143 LSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAG 1199

BLAST of Sed0025830 vs. NCBI nr
Match: KAA0053234.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 7.7e-38
Identity = 95/222 (42.79%), Postives = 111/222 (50.00%), Query Frame = 0

Query: 1    MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR------ 60
            MQ GKVVAYASRQLK  EQNYPTHD+ELAAVVFA +      YGE+IQ+FTDH+      
Sbjct: 878  MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 937

Query: 61   ------------------------------------------------------------ 120
                                                                        
Sbjct: 938  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKLAQLTVQPTLRQRIIDAQSN 997

Query: 121  ---------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGG 136
                                 +S+GGL +  RLCVP    ++ ELLSEAHSSPF+ HPG 
Sbjct: 998  DPYLVEKRGLAETRQAVEFSLSSDGGLLFERRLCVPSDRAVKTELLSEAHSSPFSMHPGS 1057

BLAST of Sed0025830 vs. NCBI nr
Match: KAA0042188.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.2 bits (422), Expect = 1.0e-37
Identity = 95/225 (42.22%), Postives = 112/225 (49.78%), Query Frame = 0

Query: 1   MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR------ 60
           MQ GKVVAYASRQLK  EQNYPTHD+ELAAVVFA +      YGE+IQ+FTDH+      
Sbjct: 761 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKCFF 820

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 821 TQKELNMRQRRWLELVKDYDCEILYHPSKRAEIAVSVGAVTMQLAQLTVQPTLRQRIIDA 880

Query: 121 ------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWH 136
                                   +S+GGL +  RLCVP  + ++ ELLSEAHSSPF+ H
Sbjct: 881 QSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH 940

BLAST of Sed0025830 vs. ExPASy Swiss-Prot
Match: O93209 (Pro-Pol polyprotein OS=Feline foamy virus OX=53182 GN=pol PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 33/114 (28.95%), Postives = 55/114 (48.25%), Query Frame = 0

Query: 22  PTHDMELAAVVFADQDLEALPYGERIQMFTDHRASNGGLAYR--GRLCVPDVAGLRAELL 81
           P  D+E    + A Q+ E LP G   Q +T    +N  +  R  G   +P  +  R +L+
Sbjct: 753 PKLDIEQIKAIQACQNNERLPVGYPKQ-YTYELQNNKCMVLRKDGWREIPP-SRERYKLI 812

Query: 82  SEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRP 134
            EAH+     H G   +   +++ +WW  MK+D++ F+S C  C+ V     +P
Sbjct: 813 KEAHNIS---HAGREAVLLKIQENYWWPKMKKDISSFLSTCNVCKMVNPLNLKP 861

BLAST of Sed0025830 vs. ExPASy Swiss-Prot
Match: G5E8B9 (Zinc finger and BTB domain-containing protein 11 OS=Mus musculus OX=10090 GN=Zbtb11 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.5e-04
Identity = 20/59 (33.90%), Postives = 32/59 (54.24%), Query Frame = 0

Query: 75  RAELLSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRP 134
           R  L+  AH  P   H    + + DL +T+WW G+ + V +++ +C  CQ+ K  R RP
Sbjct: 71  RQGLIEAAHLGPGGTHHTRHQTWHDLSKTYWWRGILKQVKDYIKQCSKCQE-KLDRSRP 128

BLAST of Sed0025830 vs. ExPASy TrEMBL
Match: A0A5A7UWA4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1661G00100 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.9e-38
Identity = 91/210 (43.33%), Postives = 112/210 (53.33%), Query Frame = 0

Query: 1   MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR------ 60
           MQ GKVVAYASRQLK  E NYPTHD+ELAAVVFA +      YGE+IQ+FTDH+      
Sbjct: 611 MQQGKVVAYASRQLKSHEHNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 670

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 671 TKKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKKIIDAQSNDPNLVEKRGLAE 730

Query: 121 ---------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGGTKMYQDLKQTFW 136
                    +S+GGL + GRLC+P  + ++ +LLSEAHSSPF+ HPG TKMYQ+LK+ +W
Sbjct: 731 AGQAVKFFISSDGGLLFEGRLCMPSDSAVKTKLLSEAHSSPFSMHPGSTKMYQNLKRVYW 790

BLAST of Sed0025830 vs. ExPASy TrEMBL
Match: A0A5A7UDB1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00190 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.7e-38
Identity = 95/222 (42.79%), Postives = 111/222 (50.00%), Query Frame = 0

Query: 1    MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR------ 60
            MQ GKVVAYASRQLK  EQNYPTHD+ELAAVVFA +      YGE+IQ+FTDH+      
Sbjct: 878  MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 937

Query: 61   ------------------------------------------------------------ 120
                                                                        
Sbjct: 938  TQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKLAQLTVQPTLRQRIIDAQSN 997

Query: 121  ---------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGG 136
                                 +S+GGL +  RLCVP    ++ ELLSEAHSSPF+ HPG 
Sbjct: 998  DPYLVEKRGLAETRQAVEFSLSSDGGLLFERRLCVPSDRAVKTELLSEAHSSPFSMHPGS 1057

BLAST of Sed0025830 vs. ExPASy TrEMBL
Match: A0A5A7TW65 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold83G00760 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.7e-38
Identity = 92/177 (51.98%), Postives = 106/177 (59.89%), Query Frame = 0

Query: 1    MQHGKVVAYASRQLKPFEQNYPTHDMELAAV-----VFADQDLEAL-------------- 60
            MQ GKVVAYASRQLK  EQNYPTHD+ELAAV     +  D D E L              
Sbjct: 1023 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVRRWLELVKDYDCEILYHPGKANVVADALS 1082

Query: 61   ----------------PY-------GERIQMFTDHRASNGGLAYRGRLCVPDVAGLRAEL 120
                            PY        E  Q+     +S+GGL +  RLCVP  + ++ EL
Sbjct: 1083 RKPTLRQRIIDAQSNDPYLVEKRGLAEAGQVVEFSLSSDGGLLFERRLCVPSDSAVKTEL 1142

Query: 121  LSEAHSSPFAWHPGGTKMYQDLKQTFWWMGMKRDVAEFVSRCLTCQQVKAPRQRPAG 136
            LSEAHSSPF+ HPG TKMYQDLK+ +WW  MKR+VAEFVSRCL CQQVKAPRQ+PAG
Sbjct: 1143 LSEAHSSPFSMHPGSTKMYQDLKRVYWWRNMKREVAEFVSRCLVCQQVKAPRQKPAG 1199

BLAST of Sed0025830 vs. ExPASy TrEMBL
Match: A0A5A7TH91 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006830 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.9e-38
Identity = 95/225 (42.22%), Postives = 112/225 (49.78%), Query Frame = 0

Query: 1   MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR------ 60
           MQ GKVVAYASRQLK  EQNYPTHD+ELAAVVFA +      YGE+IQ+FTDH+      
Sbjct: 761 MQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKCFF 820

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 821 TQKELNMRQRRWLELVKDYDCEILYHPSKRAEIAVSVGAVTMQLAQLTVQPTLRQRIIDA 880

Query: 121 ------------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWH 136
                                   +S+GGL +  RLCVP  + ++ ELLSEAHSSPF+ H
Sbjct: 881 QSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMH 940

BLAST of Sed0025830 vs. ExPASy TrEMBL
Match: A0A5A7UC07 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00040 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.9e-38
Identity = 95/222 (42.79%), Postives = 111/222 (50.00%), Query Frame = 0

Query: 1    MQHGKVVAYASRQLKPFEQNYPTHDMELAAVVFADQDLEALPYGERIQMFTDHR------ 60
            MQ GKVVAYASRQLK  EQ YPTHD+ELAAVVFA +      YGE+IQ+FTDH+      
Sbjct: 1011 MQQGKVVAYASRQLKSHEQKYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFF 1070

Query: 61   ------------------------------------------------------------ 120
                                                                        
Sbjct: 1071 THKELNIRQRRWLELVKDYDCEILYHPGKANVVADALSRKLAQLTVQPTLTQRIIDAQSN 1130

Query: 121  ---------------------ASNGGLAYRGRLCVPDVAGLRAELLSEAHSSPFAWHPGG 136
                                 +S+GGL +  RLCVP  + ++ ELLSEAHSSPF+ HPG 
Sbjct: 1131 DPYLVKKRGLAEAGQAVEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFSMHPGS 1190

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_042019055.12.0e-3859.29uncharacterized protein LOC121766889, partial [Salvia splendens][more]
KAA0060263.15.9e-3843.33ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ95994.1 ty3-gyp... [more]
KAA0047194.17.7e-3851.98DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0053234.17.7e-3842.79DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0042188.11.0e-3742.22pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
O932091.2e-0428.95Pro-Pol polyprotein OS=Feline foamy virus OX=53182 GN=pol PE=3 SV=1[more]
G5E8B91.5e-0433.90Zinc finger and BTB domain-containing protein 11 OS=Mus musculus OX=10090 GN=Zbt... [more]
Match NameE-valueIdentityDescription
A0A5A7UWA42.9e-3843.33Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16... [more]
A0A5A7UDB13.7e-3842.79Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10... [more]
A0A5A7TW653.7e-3851.98DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7TH914.9e-3842.22Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
A0A5A7UC074.9e-3842.79Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041588Integrase zinc-binding domainPFAMPF17921Integrase_H2C2coord: 74..128
e-value: 1.2E-18
score: 66.9
IPR041373Reverse transcriptase, RNase H-like domainPFAMPF17917RT_RNaseHcoord: 5..55
e-value: 8.6E-12
score: 45.3
NoneNo IPR availableGENE3D1.10.340.70coord: 45..127
e-value: 2.7E-19
score: 71.2
NoneNo IPR availablePANTHERPTHR24559:SF355PROTEIN, PUTATIVE-RELATEDcoord: 1..132
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 1..132
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 2..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0025830.1Sed0025830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0016787 hydrolase activity