Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCATCTGGTTGGCGCCATTCTCAACCTAAGCAAATTCTCTCAACTCTCGATTTCACCGGAAATGGCACCGAGGCAATGGCGAACAGTCTTCACCGGCGCCGCCGTGATCCTCGCCGGAATATGCACTCTCAACATCGCTTCTTTTCTCACCATCCAAACGTTCCGTCGCAGCGTTGAAGCCAAACGGGTAAAATCCAATTTTCTCCCACGAATACACATCGTTTTTTCAAAGCTAAACCTGTATGTATGTTGGAAATCAAGCAAGGCTTGTTAATTCTTTGACATTATTCTATTGGGATTTTTTTTTTCTGTATTTGTGCAGAGAAAGATTGGTTTGCCCTGTAATGCTTGTAGAGGAAAAGGGTTTTATGTTTGCAAATTATGCGGTGGCGATGCGGTCATCAATTGGTCGCCATTGTCCGATCCTATTGCCATGAATCCCTGCGTGTGCCCCACTTGTGAGGGGAATAGGTTAAACTTTCAAGTTTCAACCCCTTTTGATTTCGCCCATTGCTGATTGTTAGAACTTTGGCTGGTTAAATTGATGGCATTTCTCTTCTTTTTGCTTTACTTGATGGATTCTATGTTCTCCTCTGTTCTTATCCAAATTTTCTTCAGGATTCTGAAAGAAGATACTGAACCAAGTTGTTTTTGGGTTTTGGAGTTTTTTTGCTATTTGTTTGTTGGCAAAGTGAGGAAGGAAATAGAAATAGTCCATCTTAAGTAAAAAAAAAAAAGAAAAAAAAAGAAGCTATATTAAGAAAATGGTTCTGTTTGGGCAACAAGCGCATAGCTCAATCGGCATAAGTGTCTATCCATGACCAAGAGGTCATGGAATCTGAGTATGCAGAAAAAAAAATTTGGTAGGTTGGTGGTAGCATTAACCCCTAATGACATTAGAAGCCAAAAATAGCTGTAATAGAATGGATAGAACCCAGATAACCCGTCTTCTTTTTTCATGATTGGAAAAATAAGAAGTTGCTCAAGTGTAACCTGTTATATCAGTGGAATTAATACAGATTAGAGAAAGCAAGCAAGGAAGGAGATCATCTTGTGAAGCCGACCTGGAGAGCCGGTACAATTGAGCAACAATGCCAACGACGGACCTCATGGACTTTTTGAGTCTAATGCTCATGTCGAGGATCGGGATGGTTGTATAGGTTCGCCTGTTGAAGATGGCTGTCCACTCTCAGTTTTAGTTCTTTGACCTGAAACCATTAGGTCTAGAACCTCTGGATCCAGTGGATAATTGAACTCTAGAACATGGCAGCATGTTTATCATTCTCTCTTTTTGTTTAGATGACTGGACAGTTGGAGCTTTAGCTCTCCTATATCGGATCCGGAAGGCACAGTTTTTTTTAAAGCTCACTCAATAGTTCGAACCTGTGACCTCTAAACGAGTATGATCCAAAGATCTTAAGCACTTACCAGTAAGGCTATCCTGAGGAGATGTTTATCTTAAACTTCTTGCTTGAAAGAATACTGCAAACATTAGTGAAAACATCAGAAGGAGACCGGGGAGTTCAACTCGAAGCATGAAAATCAAACTTTCTCATCTAACACAATTGCAGGTATAATTTCCATCCGAACGAGCGAAAACATGATTGAAATATCAAAAGCTGCCTGTTCAGCTGAAGAATGGTCATTTCATTGCTTCAACTGCCATGCCTCAGTACTGTCACATAAGGTTACTTGTGATTGTCAACACTTAGATTTTTCTTTTTTTCCTTCTCAATTTCTCATGATTAAAGTTTATATTTGCAGAACATTCACACTTTGATTGCTTGTTATTCTTTTTAGTTTGGTAATTGGTGAGTGAAAAATTAACCCAACAGGCTAGAATCATGTGATGGAAAGGAAGAAGGCTGATTGTTTAAGGTTAAAGCATGTGCTATGATTTTTTAGTTTTCAGTTCTCATGATTTTGAGAATTAGAATTTGACTCTATGGATGAAACTTTTATAGAAATTTTTATAAAGAG
mRNA sequence
CTCCATCTGGTTGGCGCCATTCTCAACCTAAGCAAATTCTCTCAACTCTCGATTTCACCGGAAATGGCACCGAGGCAATGGCGAACAGTCTTCACCGGCGCCGCCGTGATCCTCGCCGGAATATGCACTCTCAACATCGCTTCTTTTCTCACCATCCAAACGTTCCGTCGCAGCGTTGAAGCCAAACGGAGAAAGATTGGTTTGCCCTGTAATGCTTGTAGAGGAAAAGGGTTTTATGTTTGCAAATTATGCGGTGGCGATGCGGTCATCAATTGGTCGCCATTGTCCGATCCTATTGCCATGAATCCCTGCGTGTGCCCCACTTGTGAGGGGAATAGGTTAAACTTTCAAGTTTCAACCCCTTTTGATTTCGCCCATTGCTGATTGTTAGAACTTTGGCTGGTTAAATTGATGGCATTTCTCTTCTTTTTGCTTTACTTGATGGATTCTATGTTCTCCTCTGTTCTTATCCAAATTTTCTTCAGGATTCTGAAAGAAGATACTGAACCAAGTTGTTTTTGGGTTTTGGAGTTTTTTTGCTATTTGTTTGTTGGCAAAGTGAGGAAGGAAATAGAAATAGTCCATCTTAAGTAAAAAAAAAAAAGAAAAAAAAAGAAGCTATATTAAGAAAATGGTTCTGTTTGGGCAACAAGCGCATAGCTCAATCGGCATAAGTGTCTATCCATGACCAAGAGGTCATGGAATCTGAGTATGCAGAAAAAAAAATTTGGTAGGTTGGTGGTAGCATTAACCCCTAATGACATTAGAAGCCAAAAATAGCTGTAATAGAATGGATAGAACCCAGATAACCCGTCTTCTTTTTTCATGATTGGAAAAATAAGAAGTTGCTCAAGTGTAACCTGTTATATCAGTGGAATTAATACAGATTAGAGAAAGCAAGCAAGGAAGGAGATCATCTTGTGAAGCCGACCTGGAGAGCCGGTACAATTGAGCAACAATGCCAACGACGGACCTCATGGACTTTTTGAGTCTAATGCTCATGTCGAGGATCGGGATGGTTGTATAGGTTCGCCTGTTGAAGATGGCTGTCCACTCTCAGTTTTAGTTCTTTGACCTGAAACCATTAGGTCTAGAACCTCTGGATCCAGTGGATAATTGAACTCTAGAACATGGCAGCATGTTTATCATTCTCTCTTTTTGTTTAGATGACTGGACAGTTGGAGCTTTAGCTCTCCTATATCGGATCCGGAAGGCACAGTTTTTTTTAAAGCTCACTCAATAGTTCGAACCTGTGACCTCTAAACGAGTATGATCCAAAGATCTTAAGCACTTACCAGTAAGGCTATCCTGAGGAGATGTTTATCTTAAACTTCTTGCTTGAAAGAATACTGCAAACATTAGTGAAAACATCAGAAGGAGACCGGGGAGTTCAACTCGAAGCATGAAAATCAAACTTTCTCATCTAACACAATTGCAGGTATAATTTCCATCCGAACGAGCGAAAACATGATTGAAATATCAAAAGCTGCCTGTTCAGCTGAAGAATGGTCATTTCATTGCTTCAACTGCCATGCCTCAGTACTGTCACATAAGGTTACTTGTGATTGTCAACACTTAGATTTTTCTTTTTTTCCTTCTCAATTTCTCATGATTAAAGTTTATATTTGCAGAACATTCACACTTTGATTGCTTGTTATTCTTTTTAGTTTGGTAATTGGTGAGTGAAAAATTAACCCAACAGGCTAGAATCATGTGATGGAAAGGAAGAAGGCTGATTGTTTAAGGTTAAAGCATGTGCTATGATTTTTTAGTTTTCAGTTCTCATGATTTTGAGAATTAGAATTTGACTCTATGGATGAAACTTTTATAGAAATTTTTATAAAGAG
Coding sequence (CDS)
ATGGCACCGAGGCAATGGCGAACAGTCTTCACCGGCGCCGCCGTGATCCTCGCCGGAATATGCACTCTCAACATCGCTTCTTTTCTCACCATCCAAACGTTCCGTCGCAGCGTTGAAGCCAAACGGAGAAAGATTGGTTTGCCCTGTAATGCTTGTAGAGGAAAAGGGTTTTATGTTTGCAAATTATGCGGTGGCGATGCGGTCATCAATTGGTCGCCATTGTCCGATCCTATTGCCATGAATCCCTGCGTGTGCCCCACTTGTGAGGGGAATAGGTTAAACTTTCAAGTTTCAACCCCTTTTGATTTCGCCCATTGCTGA
Protein sequence
MAPRQWRTVFTGAAVILAGICTLNIASFLTIQTFRRSVEAKRRKIGLPCNACRGKGFYVCKLCGGDAVINWSPLSDPIAMNPCVCPTCEGNRLNFQVSTPFDFAHC
Homology
BLAST of Sed0025696 vs. NCBI nr
Match:
KAA0061587.1 (uncharacterized protein E6C27_scaffold41G001520 [Cucumis melo var. makuwa] >TYJ97796.1 uncharacterized protein E5676_scaffold285G00060 [Cucumis melo var. makuwa])
HSP 1 Score: 173.7 bits (439), Expect = 8.4e-40
Identity = 78/99 (78.79%), Postives = 86/99 (86.87%), Query Frame = 0
Query: 1 MAPRQWRTVFTGAAVILAGICTLNIASFLTIQTFRRSVEAKRRKIGLPCNACRGKGFYVC 60
M PRQ RT+FTGAAVIL GICTLN+ASFLTIQT R + EAKRRKI LPC ACRGKGFY+C
Sbjct: 1 MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60
Query: 61 KLCGGDAVINWSPLSDPIAMNPCVCPTCEGNRLNFQVST 100
KLC G+AVI WSPLSDPIAMNPCVCPTCEGNR + V++
Sbjct: 61 KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRFSVHVNS 99
BLAST of Sed0025696 vs. NCBI nr
Match:
XP_004139324.1 (uncharacterized protein LOC101203873 [Cucumis sativus] >KGN60659.1 hypothetical protein Csa_019507 [Cucumis sativus])
HSP 1 Score: 172.2 bits (435), Expect = 2.4e-39
Identity = 78/93 (83.87%), Postives = 84/93 (90.32%), Query Frame = 0
Query: 1 MAPRQWRTVFTGAAVILAGICTLNIASFLTIQTFRRSVEAKRRKIGLPCNACRGKGFYVC 60
M PRQ RT+FTGAAVIL GICTLN+ASFLTIQT R + EAKRRKIGLPC ACRGKGFY+C
Sbjct: 1 MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRVTAEAKRRKIGLPCKACRGKGFYMC 60
Query: 61 KLCGGDAVINWSPLSDPIAMNPCVCPTCEGNRL 94
KLC G+AVI WSPLSDPIAMNPCVCPTCEGNR+
Sbjct: 61 KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRV 93
BLAST of Sed0025696 vs. NCBI nr
Match:
XP_008457839.1 (PREDICTED: uncharacterized protein LOC103497424 [Cucumis melo])
HSP 1 Score: 171.0 bits (432), Expect = 5.5e-39
Identity = 77/93 (82.80%), Postives = 83/93 (89.25%), Query Frame = 0
Query: 1 MAPRQWRTVFTGAAVILAGICTLNIASFLTIQTFRRSVEAKRRKIGLPCNACRGKGFYVC 60
M PRQ RT+FTGAAVIL GICTLN+ASFLTIQT R + EAKRRKI LPC ACRGKGFY+C
Sbjct: 1 MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60
Query: 61 KLCGGDAVINWSPLSDPIAMNPCVCPTCEGNRL 94
KLC G+AVI WSPLSDPIAMNPCVCPTCEGNR+
Sbjct: 61 KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRV 93
BLAST of Sed0025696 vs. NCBI nr
Match:
XP_022142951.1 (uncharacterized protein LOC111012944 [Momordica charantia])
HSP 1 Score: 171.0 bits (432), Expect = 5.5e-39
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 0
Query: 1 MAPRQWRTVFTGAAVILAGICTLNIASFLTIQTFRRSVEAKRRKIGLPCNACRGKGFYVC 60
M PRQ RTVFTGAAVIL GICTLN ASFLTIQT R + EAKRRKI LPC ACRGKGFY+C
Sbjct: 1 MIPRQLRTVFTGAAVILGGICTLNFASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60
Query: 61 KLCGGDAVINWSPLSDPIAMNPCVCPTCEGNRL 94
KLC G+AVI+WSPLSDPIAMNPCVCPTCEGNR+
Sbjct: 61 KLCRGNAVIHWSPLSDPIAMNPCVCPTCEGNRV 93
BLAST of Sed0025696 vs. NCBI nr
Match:
XP_038889623.1 (uncharacterized protein LOC120079492 [Benincasa hispida])
HSP 1 Score: 169.5 bits (428), Expect = 1.6e-38
Identity = 77/93 (82.80%), Postives = 82/93 (88.17%), Query Frame = 0
Query: 1 MAPRQWRTVFTGAAVILAGICTLNIASFLTIQTFRRSVEAKRRKIGLPCNACRGKGFYVC 60
M P+Q RTVFTGAAVIL GICTLN ASFLTIQT R + EAKRRKI LPC ACRGKGFY+C
Sbjct: 1 MIPKQLRTVFTGAAVILGGICTLNFASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60
Query: 61 KLCGGDAVINWSPLSDPIAMNPCVCPTCEGNRL 94
KLC G+AVI WSPLSDPIAMNPCVCPTCEGNR+
Sbjct: 61 KLCQGNAVIQWSPLSDPIAMNPCVCPTCEGNRV 93
BLAST of Sed0025696 vs. ExPASy TrEMBL
Match:
A0A5D3BFD4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00060 PE=4 SV=1)
HSP 1 Score: 173.7 bits (439), Expect = 4.1e-40
Identity = 78/99 (78.79%), Postives = 86/99 (86.87%), Query Frame = 0
Query: 1 MAPRQWRTVFTGAAVILAGICTLNIASFLTIQTFRRSVEAKRRKIGLPCNACRGKGFYVC 60
M PRQ RT+FTGAAVIL GICTLN+ASFLTIQT R + EAKRRKI LPC ACRGKGFY+C
Sbjct: 1 MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60
Query: 61 KLCGGDAVINWSPLSDPIAMNPCVCPTCEGNRLNFQVST 100
KLC G+AVI WSPLSDPIAMNPCVCPTCEGNR + V++
Sbjct: 61 KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRFSVHVNS 99
BLAST of Sed0025696 vs. ExPASy TrEMBL
Match:
A0A0A0LI05 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006050 PE=4 SV=1)
HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39
Identity = 78/93 (83.87%), Postives = 84/93 (90.32%), Query Frame = 0
Query: 1 MAPRQWRTVFTGAAVILAGICTLNIASFLTIQTFRRSVEAKRRKIGLPCNACRGKGFYVC 60
M PRQ RT+FTGAAVIL GICTLN+ASFLTIQT R + EAKRRKIGLPC ACRGKGFY+C
Sbjct: 1 MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRVTAEAKRRKIGLPCKACRGKGFYMC 60
Query: 61 KLCGGDAVINWSPLSDPIAMNPCVCPTCEGNRL 94
KLC G+AVI WSPLSDPIAMNPCVCPTCEGNR+
Sbjct: 61 KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRV 93
BLAST of Sed0025696 vs. ExPASy TrEMBL
Match:
A0A6J1CNQ8 (uncharacterized protein LOC111012944 OS=Momordica charantia OX=3673 GN=LOC111012944 PE=4 SV=1)
HSP 1 Score: 171.0 bits (432), Expect = 2.6e-39
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 0
Query: 1 MAPRQWRTVFTGAAVILAGICTLNIASFLTIQTFRRSVEAKRRKIGLPCNACRGKGFYVC 60
M PRQ RTVFTGAAVIL GICTLN ASFLTIQT R + EAKRRKI LPC ACRGKGFY+C
Sbjct: 1 MIPRQLRTVFTGAAVILGGICTLNFASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60
Query: 61 KLCGGDAVINWSPLSDPIAMNPCVCPTCEGNRL 94
KLC G+AVI+WSPLSDPIAMNPCVCPTCEGNR+
Sbjct: 61 KLCRGNAVIHWSPLSDPIAMNPCVCPTCEGNRV 93
BLAST of Sed0025696 vs. ExPASy TrEMBL
Match:
A0A1S3C6K9 (uncharacterized protein LOC103497424 OS=Cucumis melo OX=3656 GN=LOC103497424 PE=4 SV=1)
HSP 1 Score: 171.0 bits (432), Expect = 2.6e-39
Identity = 77/93 (82.80%), Postives = 83/93 (89.25%), Query Frame = 0
Query: 1 MAPRQWRTVFTGAAVILAGICTLNIASFLTIQTFRRSVEAKRRKIGLPCNACRGKGFYVC 60
M PRQ RT+FTGAAVIL GICTLN+ASFLTIQT R + EAKRRKI LPC ACRGKGFY+C
Sbjct: 1 MIPRQLRTIFTGAAVILGGICTLNLASFLTIQTLRLTAEAKRRKIALPCKACRGKGFYIC 60
Query: 61 KLCGGDAVINWSPLSDPIAMNPCVCPTCEGNRL 94
KLC G+AVI WSPLSDPIAMNPCVCPTCEGNR+
Sbjct: 61 KLCRGNAVIQWSPLSDPIAMNPCVCPTCEGNRV 93
BLAST of Sed0025696 vs. ExPASy TrEMBL
Match:
A0A6A1V850 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G010454 PE=4 SV=1)
HSP 1 Score: 142.5 bits (358), Expect = 1.0e-30
Identity = 62/93 (66.67%), Postives = 75/93 (80.65%), Query Frame = 0
Query: 1 MAPRQWRTVFTGAAVILAGICTLNIASFLTIQTFRRSVEAKRRKIGLPCNACRGKGFYVC 60
M P+ RTV G A+IL G+ TLN+AS +TI+ R S EAKRRKIGLPC CRGKGFY+C
Sbjct: 1 MIPKPLRTVGIGGAIILGGLLTLNLASSVTIRAIRFSNEAKRRKIGLPCGVCRGKGFYIC 60
Query: 61 KLCGGDAVINWSPLSDPIAMNPCVCPTCEGNRL 94
KLC G+A INWSPL DP+A+NPC+CPTC+GNR+
Sbjct: 61 KLCKGNATINWSPLFDPVAINPCLCPTCDGNRV 93
BLAST of Sed0025696 vs. TAIR 10
Match:
AT2G34860.1 (DnaJ/Hsp40 cysteine-rich domain superfamily protein )
HSP 1 Score: 42.0 bits (97), Expect = 3.6e-04
Identity = 30/102 (29.41%), Postives = 40/102 (39.22%), Query Frame = 0
Query: 4 RQWRTVFTGAAVILAGICTLNIASFLTIQTFRRSVEAKRRKIGLPCNACRGKGFYVCKLC 63
RQW T A V + N +F+++Q S A +K G C C+G G +C +C
Sbjct: 65 RQWMT----ACVCASAALISNSYTFVSVQ----SAAALDKKPGGSCRNCQGSGAVLCDMC 124
Query: 64 GGDA---VINWSPLSDPIAMNPC---------VCPTCEGNRL 94
GG +N D C VCP C G L
Sbjct: 125 GGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGL 158
BLAST of Sed0025696 vs. TAIR 10
Match:
AT2G34860.2 (DnaJ/Hsp40 cysteine-rich domain superfamily protein )
HSP 1 Score: 42.0 bits (97), Expect = 3.6e-04
Identity = 30/102 (29.41%), Postives = 40/102 (39.22%), Query Frame = 0
Query: 4 RQWRTVFTGAAVILAGICTLNIASFLTIQTFRRSVEAKRRKIGLPCNACRGKGFYVCKLC 63
RQW T A V + N +F+++Q S A +K G C C+G G +C +C
Sbjct: 65 RQWMT----ACVCASAALISNSYTFVSVQ----SAAALDKKPGGSCRNCQGSGAVLCDMC 124
Query: 64 GGDA---VINWSPLSDPIAMNPC---------VCPTCEGNRL 94
GG +N D C VCP C G L
Sbjct: 125 GGTGKWKALNRKRAKDVYEFTECPNCYGRGKLVCPVCLGTGL 158
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0061587.1 | 8.4e-40 | 78.79 | uncharacterized protein E6C27_scaffold41G001520 [Cucumis melo var. makuwa] >TYJ9... | [more] |
XP_004139324.1 | 2.4e-39 | 83.87 | uncharacterized protein LOC101203873 [Cucumis sativus] >KGN60659.1 hypothetical ... | [more] |
XP_008457839.1 | 5.5e-39 | 82.80 | PREDICTED: uncharacterized protein LOC103497424 [Cucumis melo] | [more] |
XP_022142951.1 | 5.5e-39 | 83.87 | uncharacterized protein LOC111012944 [Momordica charantia] | [more] |
XP_038889623.1 | 1.6e-38 | 82.80 | uncharacterized protein LOC120079492 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BFD4 | 4.1e-40 | 78.79 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0LI05 | 1.2e-39 | 83.87 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006050 PE=4 SV=1 | [more] |
A0A6J1CNQ8 | 2.6e-39 | 83.87 | uncharacterized protein LOC111012944 OS=Momordica charantia OX=3673 GN=LOC111012... | [more] |
A0A1S3C6K9 | 2.6e-39 | 82.80 | uncharacterized protein LOC103497424 OS=Cucumis melo OX=3656 GN=LOC103497424 PE=... | [more] |
A0A6A1V850 | 1.0e-30 | 66.67 | Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G010454 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT2G34860.1 | 3.6e-04 | 29.41 | DnaJ/Hsp40 cysteine-rich domain superfamily protein | [more] |
AT2G34860.2 | 3.6e-04 | 29.41 | DnaJ/Hsp40 cysteine-rich domain superfamily protein | [more] |