Sed0025179 (gene) Chayote v1

Overview


Name	Sed0025179
Type	gene
Organism	Sechium edule (Chayote v1)
Description	transcription factor SCREAM2-like isoform X1
Location	LG03: 2138423 .. 2140236 (-)
RNA-Seq Expression	Sed0025179
Synteny	Sed0025179

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGAAAGCTAGCAAACAGAAGATATCATATATAGATTTGAGAGCTCATATTATGATGCCCCTTATAAAAACACACTCTCACAGAAATTTTTGCAGAGTGAAAATTAAGAACAAAAAAGAAAAAAGAAAAAAAAGAAGATATATTTGAATCCATGGTTTCTAGAGAGCTCAACAATGCAACTCTTCATGAAAAGCTTCAATTACTTCGCTCTATTACCAACTCTCATGCTGTAATTTCCTTCTCCCATTTTCAAATCTCTTCTTCTACTACTGTTTTTGTCATCAAAAACCTTTTTTTTTCAAAATGAATTGTGTGAATTTAATTGTATAGATTGTTCTCTAAAAGTGACTTAGATCAGACGCTTGAAATTTCAAGATATGATTTGTTTTTTTAGTGGTTGCTTGAAGTCAACAATAGATAGATGGTGCCAATAAAAGAAAAAGCTCAGCGGCATAAGTATTATATTCGATGATCAAAAGATCACGGGTTCAAATCTCCACCTCCAATAGTTGTAACTCAAAAAAAACAACAACTGAGAGATGGCTTTAATTTCAAATTTTATATGAATTTATGCATAAGTTTAGGAAGATTTGAGAAATCAAAAGTTACAATTCAATTTATGAAAGAATTATTTTTCAACTGGTTTCATACTCACCTAAGTTTTAAAATGTATTGGCAAAAGAGAATTTGGGGGTATTTTCTTAATTTTATTTTTTGAATAATGGTTTTGAAAAAGGGTTAAAAAGAGAACCAAATGAATTTCTAACAAAAAAAATTTGGTGTTGTGTGTGTGTGGCAGCAAAACAAGGCTTCAATTATAGTGGATGCATCAAAATATATCAAGGAGCTAAAACACAAAGTAGAAAGATTGAATCAAGACATATCAACCAACTCACTTTCTAATCATCATCATCATCATCATCCCATGGTATTTTAAGTCAATAAATCCTTAATTTCTTCTTCCATTTCTAAATTAATCAACTTTTTACCATTTTAATTCCATTTTCCAATCTGGGTTTGTTTTGCTTTGCTTCAATAATAATAATAATATATCAGGGTCTTGTAATAAAATTAAAGTTACCTATTTGTTTGTGTGTTACAGCAGGTTACAGTGGAAACCCTAGTAAAGGGATTTTCTATAAATGTATTTTCAGAGAAAAGCTGCCAAGGTCTCCTTGTCTCAATATTACAAGTCTTTGAAGACCTGAGGCTTAATGTTATTGAAGCTAGGGTTTCTTGTACTGACACTTTCCAATTACAAGCCATTGGAGAAGTAAGATTTTCCAAACACTATTTTTTTTCCTCTAAATTTTTGCATATTTATTATCATCATCAATACAATATATTTTATTTATTTCTATCCTCTCACAACTATAATTGATTGTCTTTAATTTGTTCAGCTCAACTAATTCAAAGCAAATAAGTTTAATTCATTGAAAACAATTCGTTTAACATAGAAAACATGTAAGTTCAATAGAGGGAAAGAATGACAATTCTCTAATATGAATTTTTTTTTTTTTTTATAAAATTTGTTATAGATGAAATATTTTAAAGAAGATGGTAAAGTTATTGACTTGTATACAATCAATCATATCCTTTAATGTTGGTTTATAAATTGGAAAAAAATGTTGGGATATGAAGGAAACATTGAATTAGAATTAAGATCTTGATGAATGAATGTGTAAATTAAAATGGGGTTTTGGCATTTTTGTAGATTGAGGAACAAGGAGAAGAAGCCATTAATGCTCAAGTTGTAAAAGAAGCAGTAGTTCAAGCTATAAAGAGCTGGAGTCAAAGCGGTGAACAAGATTAA

mRNA sequence

GGGGAAAGCTAGCAAACAGAAGATATCATATATAGATTTGAGAGCTCATATTATGATGCCCCTTATAAAAACACACTCTCACAGAAATTTTTGCAGAGTGAAAATTAAGAACAAAAAAGAAAAAAGAAAAAAAAGAAGATATATTTGAATCCATGGTTTCTAGAGAGCTCAACAATGCAACTCTTCATGAAAAGCTTCAATTACTTCGCTCTATTACCAACTCTCATGCTCAAAACAAGGCTTCAATTATAGTGGATGCATCAAAATATATCAAGGAGCTAAAACACAAAGTAGAAAGATTGAATCAAGACATATCAACCAACTCACTTTCTAATCATCATCATCATCATCATCCCATGCAGGTTACAGTGGAAACCCTAGTAAAGGGATTTTCTATAAATGTATTTTCAGAGAAAAGCTGCCAAGGTCTCCTTGTCTCAATATTACAAGTCTTTGAAGACCTGAGGCTTAATGTTATTGAAGCTAGGGTTTCTTGTACTGACACTTTCCAATTACAAGCCATTGGAGAAATTGAGGAACAAGGAGAAGAAGCCATTAATGCTCAAGTTGTAAAAGAAGCAGTAGTTCAAGCTATAAAGAGCTGGAGTCAAAGCGGTGAACAAGATTAA

Coding sequence (CDS)

ATGGTTTCTAGAGAGCTCAACAATGCAACTCTTCATGAAAAGCTTCAATTACTTCGCTCTATTACCAACTCTCATGCTCAAAACAAGGCTTCAATTATAGTGGATGCATCAAAATATATCAAGGAGCTAAAACACAAAGTAGAAAGATTGAATCAAGACATATCAACCAACTCACTTTCTAATCATCATCATCATCATCATCCCATGCAGGTTACAGTGGAAACCCTAGTAAAGGGATTTTCTATAAATGTATTTTCAGAGAAAAGCTGCCAAGGTCTCCTTGTCTCAATATTACAAGTCTTTGAAGACCTGAGGCTTAATGTTATTGAAGCTAGGGTTTCTTGTACTGACACTTTCCAATTACAAGCCATTGGAGAAATTGAGGAACAAGGAGAAGAAGCCATTAATGCTCAAGTTGTAAAAGAAGCAGTAGTTCAAGCTATAAAGAGCTGGAGTCAAAGCGGTGAACAAGATTAA

Protein sequence

MVSRELNNATLHEKLQLLRSITNSHAQNKASIIVDASKYIKELKHKVERLNQDISTNSLSNHHHHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSILQVFEDLRLNVIEARVSCTDTFQLQAIGEIEEQGEEAINAQVVKEAVVQAIKSWSQSGEQD

Homology

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BLAST of Sed0025179 vs. NCBI nr
Match: XP_038884497.1 (uncharacterized protein LOC120075304 isoform X2 [Benincasa hispida])

HSP 1 Score: 238.8 bits (608), Expect = 3.2e-59
Identity = 134/162 (82.72%), Postives = 140/162 (86.42%), Query Frame = 0


Query: 1   MVSRELNNATLHEKLQLLRSITNSHAQNKASIIVDASKYIKELKHKVERLNQDISTNSLS 60
           MVSRE   A LHEKLQLLRSITNSHA NKASIIVDASKYI+ELK KVERLNQDIST   S
Sbjct: 1   MVSREHKKAVLHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNS 60

Query: 61  NH----HHHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSILQVFEDLRLNVIEARVSCT 120
            H     H + PMQVTVE LVKGFSINVFSEKSCQGLLVSIL+VFE+L LNVIEARVSCT
Sbjct: 61  IHPNPLSHQYSPMQVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCT 120

Query: 121 DTFQLQAIGEIEEQGEEAINAQVVKEAVVQAIKSWSQSGEQD 159
           DTFQLQAI EIEE+GEEAI+AQ VKEAVVQAIKSW QSGEQD
Sbjct: 121 DTFQLQAIAEIEEEGEEAIDAQAVKEAVVQAIKSWGQSGEQD 162

[Close]

BLAST of Sed0025179 vs. NCBI nr
Match: XP_038884496.1 (uncharacterized protein LOC120075304 isoform X1 [Benincasa hispida])

HSP 1 Score: 236.9 bits (603), Expect = 1.2e-58
Identity = 135/163 (82.82%), Postives = 141/163 (86.50%), Query Frame = 0


Query: 1   MVSRELNNATLHEKLQLLRSITNSHAQ-NKASIIVDASKYIKELKHKVERLNQDISTNSL 60
           MVSRE   A LHEKLQLLRSITNSHAQ NKASIIVDASKYI+ELK KVERLNQDIST   
Sbjct: 1   MVSREHKKAVLHEKLQLLRSITNSHAQLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60

Query: 61  SNH----HHHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSILQVFEDLRLNVIEARVSC 120
           S H     H + PMQVTVE LVKGFSINVFSEKSCQGLLVSIL+VFE+L LNVIEARVSC
Sbjct: 61  SIHPNPLSHQYSPMQVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSC 120

Query: 121 TDTFQLQAIGEIEEQGEEAINAQVVKEAVVQAIKSWSQSGEQD 159
           TDTFQLQAI EIEE+GEEAI+AQ VKEAVVQAIKSW QSGEQD
Sbjct: 121 TDTFQLQAIAEIEEEGEEAIDAQAVKEAVVQAIKSWGQSGEQD 163

[Close]

BLAST of Sed0025179 vs. NCBI nr
Match: XP_022964712.1 (uncharacterized protein LOC111464709 isoform X1 [Cucurbita moschata] >XP_022991073.1 uncharacterized protein LOC111487778 isoform X1 [Cucurbita maxima] >XP_023527349.1 uncharacterized protein LOC111790608 isoform X1 [Cucurbita pepo subsp. pepo] >KAG7033274.1 Transcription factor SCREAM2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.7 bits (600), Expect = 2.7e-58
Identity = 128/158 (81.01%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 1   MVSRELNNATLHEKLQLLRSITNSHAQNKASIIVDASKYIKELKHKVERLNQDISTNSLS 60
           MVSRE   A LHEKLQLLRSITNSHA NK SIIVDASKYI+ELK KVERLNQDI+T  + 
Sbjct: 1   MVSREHKKAALHEKLQLLRSITNSHALNKGSIIVDASKYIEELKQKVERLNQDIAT--VQ 60

Query: 61  NHHHHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSILQVFEDLRLNVIEARVSCTDTFQ 120
           N  H +HPMQVTVE LVKGFSINVFSEKSCQGLLVSIL+ FE+L LNV+EARVSCTDTFQ
Sbjct: 61  NSIHPNHPMQVTVEALVKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDTFQ 120

Query: 121 LQAIGEIEEQGEEAINAQVVKEAVVQAIKSWSQSGEQD 159
           LQA  EIEEQGEEA++AQ VKEAVV+AIKSWSQ+GEQD
Sbjct: 121 LQAFAEIEEQGEEAMDAQAVKEAVVEAIKSWSQNGEQD 156

[Close]

BLAST of Sed0025179 vs. NCBI nr
Match: XP_023551077.1 (uncharacterized protein LOC111809011 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.3 bits (599), Expect = 3.5e-58
Identity = 130/158 (82.28%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 1   MVSRELNNATLHEKLQLLRSITNSHAQNKASIIVDASKYIKELKHKVERLNQDISTNSLS 60
           MVSRE NNA+LH  LQLLRSITNSHA NKASIIVDASKYI+ELK KVERLNQDIST   S
Sbjct: 1   MVSREHNNASLHHNLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQTS 60

Query: 61  NHHHHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSILQVFEDLRLNVIEARVSCTDTFQ 120
                 HPMQVTVE+L KGFSINVFSEKSCQGLLVSIL+ FE+L LNV+EARVSCTD+FQ
Sbjct: 61  -----IHPMQVTVESLAKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDSFQ 120

Query: 121 LQAIGEIEEQGEEAINAQVVKEAVVQAIKSWSQSGEQD 159
           LQAI EIEEQGEEAI+AQ VKEAVVQAIK WSQSGEQD
Sbjct: 121 LQAIAEIEEQGEEAIDAQAVKEAVVQAIKIWSQSGEQD 153

[Close]

BLAST of Sed0025179 vs. NCBI nr
Match: XP_022939238.1 (uncharacterized protein LOC111445214 isoform X2 [Cucurbita moschata])

HSP 1 Score: 234.6 bits (597), Expect = 6.0e-58
Identity = 130/158 (82.28%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 1   MVSRELNNATLHEKLQLLRSITNSHAQNKASIIVDASKYIKELKHKVERLNQDISTNSLS 60
           MVSRE NNA+LH  LQLLRSITNSHA NKASIIVDASKYI+ELK KVERLNQDIST   S
Sbjct: 1   MVSREHNNASLHHNLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQTS 60

Query: 61  NHHHHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSILQVFEDLRLNVIEARVSCTDTFQ 120
                 HPMQVTVE+L KGFSINVFSEKSCQGLLVSIL+ FE+L LNV+EARVSCTD+FQ
Sbjct: 61  -----IHPMQVTVESLAKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDSFQ 120

Query: 121 LQAIGEIEEQGEEAINAQVVKEAVVQAIKSWSQSGEQD 159
           LQAI EIEEQGEEAI+AQ VKEAVVQAIK WSQSGEQD
Sbjct: 121 LQAIAEIEEQGEEAIDAQSVKEAVVQAIKIWSQSGEQD 153

[Close]

BLAST of Sed0025179 vs. ExPASy TrEMBL
Match: A0A6J1JV46 (uncharacterized protein LOC111487778 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487778 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.3e-58
Identity = 128/158 (81.01%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 1   MVSRELNNATLHEKLQLLRSITNSHAQNKASIIVDASKYIKELKHKVERLNQDISTNSLS 60
           MVSRE   A LHEKLQLLRSITNSHA NK SIIVDASKYI+ELK KVERLNQDI+T  + 
Sbjct: 1   MVSREHKKAALHEKLQLLRSITNSHALNKGSIIVDASKYIEELKQKVERLNQDIAT--VQ 60

Query: 61  NHHHHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSILQVFEDLRLNVIEARVSCTDTFQ 120
           N  H +HPMQVTVE LVKGFSINVFSEKSCQGLLVSIL+ FE+L LNV+EARVSCTDTFQ
Sbjct: 61  NSIHPNHPMQVTVEALVKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDTFQ 120

Query: 121 LQAIGEIEEQGEEAINAQVVKEAVVQAIKSWSQSGEQD 159
           LQA  EIEEQGEEA++AQ VKEAVV+AIKSWSQ+GEQD
Sbjct: 121 LQAFAEIEEQGEEAMDAQAVKEAVVEAIKSWSQNGEQD 156

[Close]

BLAST of Sed0025179 vs. ExPASy TrEMBL
Match: A0A6J1HIH6 (uncharacterized protein LOC111464709 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464709 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.3e-58
Identity = 128/158 (81.01%), Postives = 139/158 (87.97%), Query Frame = 0


Query: 1   MVSRELNNATLHEKLQLLRSITNSHAQNKASIIVDASKYIKELKHKVERLNQDISTNSLS 60
           MVSRE   A LHEKLQLLRSITNSHA NK SIIVDASKYI+ELK KVERLNQDI+T  + 
Sbjct: 1   MVSREHKKAALHEKLQLLRSITNSHALNKGSIIVDASKYIEELKQKVERLNQDIAT--VQ 60

Query: 61  NHHHHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSILQVFEDLRLNVIEARVSCTDTFQ 120
           N  H +HPMQVTVE LVKGFSINVFSEKSCQGLLVSIL+ FE+L LNV+EARVSCTDTFQ
Sbjct: 61  NSIHPNHPMQVTVEALVKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDTFQ 120

Query: 121 LQAIGEIEEQGEEAINAQVVKEAVVQAIKSWSQSGEQD 159
           LQA  EIEEQGEEA++AQ VKEAVV+AIKSWSQ+GEQD
Sbjct: 121 LQAFAEIEEQGEEAMDAQAVKEAVVEAIKSWSQNGEQD 156

[Close]

BLAST of Sed0025179 vs. ExPASy TrEMBL
Match: A0A6J1FL41 (uncharacterized protein LOC111445214 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445214 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.9e-58
Identity = 130/158 (82.28%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 1   MVSRELNNATLHEKLQLLRSITNSHAQNKASIIVDASKYIKELKHKVERLNQDISTNSLS 60
           MVSRE NNA+LH  LQLLRSITNSHA NKASIIVDASKYI+ELK KVERLNQDIST   S
Sbjct: 1   MVSREHNNASLHHNLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQTS 60

Query: 61  NHHHHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSILQVFEDLRLNVIEARVSCTDTFQ 120
                 HPMQVTVE+L KGFSINVFSEKSCQGLLVSIL+ FE+L LNV+EARVSCTD+FQ
Sbjct: 61  -----IHPMQVTVESLAKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDSFQ 120

Query: 121 LQAIGEIEEQGEEAINAQVVKEAVVQAIKSWSQSGEQD 159
           LQAI EIEEQGEEAI+AQ VKEAVVQAIK WSQSGEQD
Sbjct: 121 LQAIAEIEEQGEEAIDAQSVKEAVVQAIKIWSQSGEQD 153

[Close]

BLAST of Sed0025179 vs. ExPASy TrEMBL
Match: A0A6J1K013 (uncharacterized protein LOC111489817 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489817 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.9e-58
Identity = 129/158 (81.65%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 1   MVSRELNNATLHEKLQLLRSITNSHAQNKASIIVDASKYIKELKHKVERLNQDISTNSLS 60
           MVSRE NNA LH  LQLLRSITNSHA NKASIIVDASKYI+ELK KVERLNQDIST   S
Sbjct: 1   MVSREHNNAALHHNLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQTS 60

Query: 61  NHHHHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSILQVFEDLRLNVIEARVSCTDTFQ 120
                 HPMQVTVE+L KGFSINVFSEKSCQGLLVSIL+ FE+L LNV+EARVSCTD+FQ
Sbjct: 61  -----IHPMQVTVESLAKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDSFQ 120

Query: 121 LQAIGEIEEQGEEAINAQVVKEAVVQAIKSWSQSGEQD 159
           LQAI EIEE+GEEAI+AQ VKEAVVQAIK WSQSGEQD
Sbjct: 121 LQAIAEIEEEGEEAIDAQAVKEAVVQAIKIWSQSGEQD 153

[Close]

BLAST of Sed0025179 vs. ExPASy TrEMBL
Match: A0A6J1FG89 (uncharacterized protein LOC111445214 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445214 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.1e-57
Identity = 131/159 (82.39%), Postives = 139/159 (87.42%), Query Frame = 0


Query: 1   MVSRELNNATLHEKLQLLRSITNSHAQ-NKASIIVDASKYIKELKHKVERLNQDISTNSL 60
           MVSRE NNA+LH  LQLLRSITNSHAQ NKASIIVDASKYI+ELK KVERLNQDIST   
Sbjct: 1   MVSREHNNASLHHNLQLLRSITNSHAQLNKASIIVDASKYIEELKQKVERLNQDISTVQT 60

Query: 61  SNHHHHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSILQVFEDLRLNVIEARVSCTDTF 120
           S      HPMQVTVE+L KGFSINVFSEKSCQGLLVSIL+ FE+L LNV+EARVSCTD+F
Sbjct: 61  S-----IHPMQVTVESLAKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTDSF 120

Query: 121 QLQAIGEIEEQGEEAINAQVVKEAVVQAIKSWSQSGEQD 159
           QLQAI EIEEQGEEAI+AQ VKEAVVQAIK WSQSGEQD
Sbjct: 121 QLQAIAEIEEQGEEAIDAQSVKEAVVQAIKIWSQSGEQD 154

[Close]

BLAST of Sed0025179 vs. TAIR 10
Match: AT2G40435.1 (BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 156.4 bits (394), Expect = 1.9e-38
Identity = 88/153 (57.52%), Postives = 109/153 (71.24%), Query Frame = 0


Query: 1   MVSRELNNATLHEKLQLLRSITNSHAQNKASIIVDASKYIKELKHKVERLNQDISTNSLS 60
           MVSRE    +L EK QLLRSITNSHA+N  SII+DASKYI++LK KVER NQD +    S
Sbjct: 1   MVSREQKRGSLQEKFQLLRSITNSHAENDTSIIMDASKYIQKLKQKVERFNQDPTAEQSS 60

Query: 61  NHHHHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSILQVFEDLRLNVIEARVSCTDTFQ 120
           +         VTVETL KGF INVFS K+  G+LVS+L+ FED+ LNV+EAR SCTD+F 
Sbjct: 61  SEPTDPKTPMVTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIGLNVLEARASCTDSFS 120

Query: 121 LQAIGEIEEQGEEAINAQVVKEAVVQAIKSWSQ 154
           L A+G   E GE  ++A+ VK+AV  AI+SW +
Sbjct: 121 LHAMGLENEDGEN-MDAEAVKQAVTDAIRSWGE 152

[Close]

BLAST of Sed0025179 vs. TAIR 10
Match: AT3G56220.1 (transcription regulators )

HSP 1 Score: 145.6 bits (366), Expect = 3.4e-35
Identity = 84/155 (54.19%), Postives = 109/155 (70.32%), Query Frame = 0


Query: 1   MVSRE-LNNATLHEKLQLLRSITNSHAQNKASIIVDASKYIKELKHKVERLNQDISTNSL 60
           MVSRE    ++L EK  LLRSIT+SHA+++ SIIVDASKYIK+LK KVE++N   ++   
Sbjct: 1   MVSREHKRGSSLREKFHLLRSITDSHAESETSIIVDASKYIKKLKQKVEKINNATTSEQS 60

Query: 61  SNHHHHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSILQVFEDLRLNVIEARVSCTDTF 120
                  +PM VTVETL KGF I V S K+  G+LV +L+ FEDL L+V+EARVSCTDTF
Sbjct: 61  FRESSDPNPM-VTVETLEKGFMIKVMSRKNEAGMLVCVLETFEDLGLDVVEARVSCTDTF 120

Query: 121 QLQAIGEIEEQGEEAINAQVVKEAVVQAIKSWSQS 155
            L AIG       + I+A+ VK+AV +AI++WS S
Sbjct: 121 SLHAIGSSNNDDGDCIDAEAVKQAVAEAIRTWSDS 154

[Close]

BLAST of Sed0025179 vs. TAIR 10
Match: AT1G29270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 98 Blast hits to 98 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-07
Identity = 37/126 (29.37%), Postives = 67/126 (53.17%), Query Frame = 0


Query: 1   MVSRELNNATLHEKLQLLRSITN--SHAQNKASIIVDASKYIKELKHKVERLNQDISTNS 60
           MV+ E        K   L+++T+       ++ +I +A  YI  LK ++E L ++     
Sbjct: 1   MVASEQKKRASQGKPHFLKNLTHFKFSIHEQSMVIREALLYIAMLKLEIEALQREYEDLK 60

Query: 61  LSNHHHHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSILQVFEDLRLNVIEARVSCTDT 120
           ++     H   +V VE + + F + + S +  +  LV+IL+ FE++ LNV +AR SC D+
Sbjct: 61  ITKKESLHQFQEVKVEKIGEMFQVKIKSPRG-ENNLVNILEAFEEMGLNVAQARASCLDS 120

Query: 121 FQLQAI 125
           F ++AI
Sbjct: 121 FAMEAI 125

[Close]

BLAST of Sed0025179 vs. TAIR 10
Match: AT5G10570.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04
Identity = 43/145 (29.66%), Postives = 77/145 (53.10%), Query Frame = 0


Query: 11  LHEKLQLLRSITNSHAQ-NKASIIVDASKYIKELKHKVERLNQD---ISTNS-LSNHHHH 70
           L+++L LLRSI     + ++ SI+ DA  Y+KEL  K+ +L +D   + +NS LS    +
Sbjct: 163 LNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLDKINKLQEDEQELGSNSHLSTLITN 222

Query: 71  HHPMQVTVETLVKGFSINVFSEKSC---QGLLVSILQVFEDLRLNVIEARVSCTDTFQLQ 130
              ++ +++  V    +N   +  C    GL+VS +   E L L + +  +SC   F LQ
Sbjct: 223 ESMVRNSLKFEVDQREVNTHIDICCPTKPGLVVSTVSTLETLGLEIEQCVISCFSDFSLQ 282

Query: 131 A-IGEIEEQGEEAINAQVVKEAVVQ 147
           A   E+ EQ    + ++  K+A+++
Sbjct: 283 ASCFEVGEQ-RYMVTSEATKQALIR 306

[Close]

BLAST of Sed0025179 vs. TAIR 10
Match: AT5G65640.1 (beta HLH protein 93 )

HSP 1 Score: 41.6 bits (96), Expect = 6.9e-04
Identity = 43/151 (28.48%), Postives = 72/151 (47.68%), Query Frame = 0


Query: 11  LHEKLQLLRSITNSHAQ-NKASIIVDASKYIKELKHKVERLNQDISTNSLSNHHHHHHPM 70
           L+++L +LRSI    ++ ++ SI+ DA  Y+KEL  K+ +L  +      SN+ HH    
Sbjct: 190 LNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKLQDEEQELGNSNNSHHSKLF 249

Query: 71  -----QVTVETLVKG---FSINVFSEKS-----CQ---GLLVSILQVFEDLRLNVIEARV 130
                    E LV+    F I+   E +     C    GLL+S +   E L L + +  +
Sbjct: 250 GDLKDLNANEPLVRNSPKFEIDRRDEDTRVDICCSPKPGLLLSTVNTLETLGLEIEQCVI 309

Query: 131 SCTDTFQLQAIGEIEEQGEEAINAQVVKEAV 145
           SC   F LQA      +  + I ++ +K+A+
Sbjct: 310 SCFSDFSLQASCSEGAEQRDFITSEDIKQAL 340

The following BLAST results are available for this feature:

BLAST of Sed0025179 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884497.1	3.2e-59	82.72	uncharacterized protein LOC120075304 isoform X2 [Benincasa hispida]	[more]
XP_038884496.1	1.2e-58	82.82	uncharacterized protein LOC120075304 isoform X1 [Benincasa hispida]	[more]
XP_022964712.1	2.7e-58	81.01	uncharacterized protein LOC111464709 isoform X1 [Cucurbita moschata] >XP_0229910...	[more]
XP_023551077.1	3.5e-58	82.28	uncharacterized protein LOC111809011 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022939238.1	6.0e-58	82.28	uncharacterized protein LOC111445214 isoform X2 [Cucurbita moschata]	[more]

BLAST of Sed0025179 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0025179 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JV46	1.3e-58	81.01	uncharacterized protein LOC111487778 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HIH6	1.3e-58	81.01	uncharacterized protein LOC111464709 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FL41	2.9e-58	82.28	uncharacterized protein LOC111445214 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1K013	4.9e-58	81.65	uncharacterized protein LOC111489817 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FG89	1.1e-57	82.39	uncharacterized protein LOC111445214 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Sed0025179 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40435.1	1.9e-38	57.52	BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G5...	[more]
AT3G56220.1	3.4e-35	54.19	transcription regulators	[more]
AT1G29270.1	1.0e-07	29.37	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G10570.1	1.1e-04	29.66	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G65640.1	6.9e-04	28.48	beta HLH protein 93	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31945:SF5	TRANSCRIPTION FACTOR SCREAM-LIKE PROTEIN	coord: 1..26
None	No IPR available	PANTHER	PTHR31945:SF5	TRANSCRIPTION FACTOR SCREAM-LIKE PROTEIN	coord: 27..113
None	No IPR available	PANTHER	PTHR31945	TRANSCRIPTION FACTOR SCREAM2-RELATED	coord: 1..26 coord: 27..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025179.1	Sed0025179.1	mRNA
Sed0025179.2	Sed0025179.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005488	binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding