Sed0025124 (gene) Chayote v1

Overview


Name	Sed0025124
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ribonuclease MC-like
Location	LG08: 29045565 .. 29046665 (+)
RNA-Seq Expression	Sed0025124
Synteny	Sed0025124

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATGTTTTTAAATGAAATTGTGGTTGTGTGGGTTGCTCTAAGTGTTTTGTACTCAGTGGTTGAATCTCAAACTTTTGACAGTTTGTGGTTTGTTCAACAGTGGCCTGACGGTGTTTGTACGGTTAAACCATGTATAGTGAAAGGATTGTCAGATTTTACTATACACGGTGTGTGGCCGCAACAAGGAAAAACATCGGTAATTAATTGCAAGGGCACTCCATATGATTTGAAAGAGGTAAGACTTGCTTAAACTCTCCGATCTCTATATTAAACATGCATTGGTTTCTAATATAATGGTAGCTAAATTAGTTAATATATTATATGGTATATATAGTCTTTATTGTTTAAGAAGTTTGTATTTGCATTTTTTCTTTCATTTTAATAGGTTTCATTTATTTATTTATTTTTGAAAGAGTTTCATTTATACTCTTAATTTTGGCAATATAAAAATTAATCTTTGATAAGCTTATATGACTTGATTTGTAATGACTAGAAAAAAAACCCCATAAATCATTTAGTTTAATTAAATAATATATCATGACATGCAAGTATATTATGACCAATTTTACTACTTTGAAGTGGTATAAAATGAAATATATATATATATATAGAGAGAGAGAGAGAGCAAAAATGATGAGTAATTTTACTAATCTATATTATTTTTGTTTTCAGATTTCAGGTATACAAAGTAATCTAAACAAAGTTTGGCCAGATCTTGAAAAAGGTAAAGATAGTGCCTTTTGGGAGTACGAATGGAAAAAACACGGTATTTGTTCTGAGAGCAAGTTTAATGAGGCGAAGTATTTTCAAATGGCTTTGAACATGAAGAACAATATCAACCTTCTCGGTGCCCTCAATTAAACCAACCAAGCAATCTAAAGTAGAAAAAGAAATTCGAACTGCTATCAAAACCAAATATGGAAAGGAACCAGGTCTTCGTTGTAAAGCCGGCACAAATGTTCCACAAACTCTGGTCGAGATCGTGATGTGTTTTGATGTTGATGGGATCACCCTTATCGATCGTCCCCTTTTGCTAGTTCCAATTGCTTGCAAACTATTATTTTTTGAAAGTGATCAAATATATATGTTGTCATGA

mRNA sequence

ATGAAAATGTTTTTAAATGAAATTGTGGTTGTGTGGGTTGCTCTAAGTGTTTTGTACTCAGTGGTTGAATCTCAAACTTTTGACAGTTTGTGGTTTGTTCAACAGTGGCCTGACGGTGTTTGTACGGTTAAACCATGTATAGTGAAAGGATTGTCAGATTTTACTATACACGGTGTGTGGCCGCAACAAGGAAAAACATCGGTAATTAATTGCAAGGGCACTCCATATGATTTGAAAGAGATTTCAGGTATACAAAGTAATCTAAACAAAGTTTGGCCAGATCTTGAAAAAGGTAAAGATAGTGCCTTTTGGGAGTACGAATGGAAAAAACACGGTATTTGTTCTGAGAGCAAGTTTAATGAGGCGAAGTATTTTCAAATGGCTTTGAACATGAAGAACAATATCAACCTTCTCGTAGAAAAAGAAATTCGAACTGCTATCAAAACCAAATATGGAAAGGAACCAGGTCTTCGTTGTAAAGCCGGCACAAATGTTCCACAAACTCTGGTCGAGATCGTGATGTGTTTTGATGTTGATGGGATCACCCTTATCGATCGTCCCCTTTTGCTAGTTCCAATTGCTTGCAAACTATTATTTTTTGAAAGTGATCAAATATATATGTTGTCATGA

Coding sequence (CDS)

ATGAAAATGTTTTTAAATGAAATTGTGGTTGTGTGGGTTGCTCTAAGTGTTTTGTACTCAGTGGTTGAATCTCAAACTTTTGACAGTTTGTGGTTTGTTCAACAGTGGCCTGACGGTGTTTGTACGGTTAAACCATGTATAGTGAAAGGATTGTCAGATTTTACTATACACGGTGTGTGGCCGCAACAAGGAAAAACATCGGTAATTAATTGCAAGGGCACTCCATATGATTTGAAAGAGATTTCAGGTATACAAAGTAATCTAAACAAAGTTTGGCCAGATCTTGAAAAAGGTAAAGATAGTGCCTTTTGGGAGTACGAATGGAAAAAACACGGTATTTGTTCTGAGAGCAAGTTTAATGAGGCGAAGTATTTTCAAATGGCTTTGAACATGAAGAACAATATCAACCTTCTCGTAGAAAAAGAAATTCGAACTGCTATCAAAACCAAATATGGAAAGGAACCAGGTCTTCGTTGTAAAGCCGGCACAAATGTTCCACAAACTCTGGTCGAGATCGTGATGTGTTTTGATGTTGATGGGATCACCCTTATCGATCGTCCCCTTTTGCTAGTTCCAATTGCTTGCAAACTATTATTTTTTGAAAGTGATCAAATATATATGTTGTCATGA

Protein sequence

MKMFLNEIVVVWVALSVLYSVVESQTFDSLWFVQQWPDGVCTVKPCIVKGLSDFTIHGVWPQQGKTSVINCKGTPYDLKEISGIQSNLNKVWPDLEKGKDSAFWEYEWKKHGICSESKFNEAKYFQMALNMKNNINLLVEKEIRTAIKTKYGKEPGLRCKAGTNVPQTLVEIVMCFDVDGITLIDRPLLLVPIACKLLFFESDQIYMLS

Homology

[Close]

BLAST of Sed0025124 vs. NCBI nr
Match: XP_022155091.1 (ribonuclease MC-like [Momordica charantia])

HSP 1 Score: 210.3 bits (534), Expect = 1.6e-50
Identity = 100/203 (49.26%), Postives = 142/203 (69.95%), Query Frame = 0


Query: 1   MKMFLNEIVVVWV-ALSVLYSVVESQTFDSLWFVQQWPDGVCTVKP--CIVKGLSDFTIH 60
           MK    EIV ++V A+++   +V+SQTFD  WFVQQWP  VC+ +   C+ +GL  FTIH
Sbjct: 1   MKTSRREIVFMFVLAITIFLPIVKSQTFDDFWFVQQWPPAVCSFQQGRCVGQGLRTFTIH 60

Query: 61  GVWPQQGKTSVINCKGTPYDLKEISGIQSNLNKVWPDLEKGKDSAFWEYEWKKHGICSES 120
           GVWPQ+G TSV+NC GTP+D  +IS ++++LN+VWP++  G +  FW +EW KHG+CSES
Sbjct: 61  GVWPQKGGTSVVNCPGTPFDFTKISSLETDLNRVWPNVITGDNKFFWSHEWNKHGVCSES 120

Query: 121 KFNEAKYFQMALNMKNNINLL---------------VEKEIRTAIKTKYGKEPGLRCKAG 180
           KFN   YFQMA+NM+N+I+L+                ++ +++A++T +GKEP LRC+ G
Sbjct: 121 KFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCR-G 180

Query: 181 TNVPQTLVEIVMCFDVDGITLID 186
           T     L+EIVMCFD DG+TLI+
Sbjct: 181 TGSNIRLIEIVMCFDDDGVTLIN 202

[Close]

BLAST of Sed0025124 vs. NCBI nr
Match: XP_004147499.1 (ribonuclease MC [Cucumis sativus] >KGN59560.1 hypothetical protein Csa_002553 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 7.4e-48
Identity = 93/196 (47.45%), Postives = 131/196 (66.84%), Query Frame = 0


Query: 7   EIVVVWVALSVLYSVVESQTFDSLWFVQQWPDGVCTVKP--CIVKGLSDFTIHGVWPQQG 66
           ++V     L++L+ +V+SQTFD  WFVQQWP  VCT++   C+ +G   FTIHG+WPQ+G
Sbjct: 8   DVVFFVFVLTILFPIVKSQTFDDFWFVQQWPPAVCTLQSGRCVGRGTRSFTIHGLWPQKG 67

Query: 67  KTSVINCKGTPYDLKEISGIQSNLNKVWPDLEKGKDSAFWEYEWKKHGICSESKFNEAKY 126
             SV NC G  +D  +I+ ++++LN VWP++  G +  FW +EW KHGICSESKF+EAKY
Sbjct: 68  GRSVTNCTGNQFDFTKIAHLENDLNVVWPNVVTGNNKFFWGHEWNKHGICSESKFDEAKY 127

Query: 127 FQMALNMKNNINLL---------------VEKEIRTAIKTKYGKEPGLRCKAGTNVPQTL 186
           FQ A+NM++ I+LL                ++ + TAI + +GK+P LRCK  +N    L
Sbjct: 128 FQTAINMRHGIDLLSVLRTGGVGPNGASKAKQRVETAISSHFGKDPILRCKKASNGQVLL 187

[Close]

BLAST of Sed0025124 vs. NCBI nr
Match: XP_008443402.1 (PREDICTED: ribonuclease MC-like [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 6.3e-47
Identity = 91/202 (45.05%), Postives = 134/202 (66.34%), Query Frame = 0


Query: 1   MKMFLNEIVVVWVALSVLYSVVESQTFDSLWFVQQWPDGVCTVKP--CIVKGLSDFTIHG 60
           M+    ++V     L++L+ +V+SQTFD+ WFVQQWP  +CT++   C+ +G   FTIHG
Sbjct: 1   MEKTKRDVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHG 60

Query: 61  VWPQQGKTSVINCKGTPYDLKEISGIQSNLNKVWPDLEKGKDSAFWEYEWKKHGICSESK 120
           +WPQ+G  SV NC G  +D  +I+ ++S+LN VWP++  G +  FW +EW KHGICSESK
Sbjct: 61  LWPQKGGRSVTNCSGNSFDFTKIAHLESDLNVVWPNVVTGNNKFFWGHEWNKHGICSESK 120

Query: 121 FNEAKYFQMALNMKNNINLL---------------VEKEIRTAIKTKYGKEPGLRCKAGT 180
           F++AKYFQ A+NM+++I+LL                ++ + TAI + + K+P LRCK  +
Sbjct: 121 FDQAKYFQTAINMRHSIDLLSVLRTGGIVPNGASKAKQRVETAISSHFAKDPILRCKTAS 180

Query: 181 NVPQTLVEIVMCFDVDGITLID 186
           N    L EIV+CFD DG+TLI+
Sbjct: 181 NGQVLLTEIVICFDDDGVTLIN 202

[Close]

BLAST of Sed0025124 vs. NCBI nr
Match: BAA10891.1 (ribonuclease (RNase LC1) [Luffa aegyptiaca])

HSP 1 Score: 198.4 bits (503), Expect = 6.3e-47
Identity = 100/202 (49.50%), Postives = 136/202 (67.33%), Query Frame = 0


Query: 1   MKMFLNEIVVVWVALSVLYSVVESQTFDSLWFVQQWPDGVCTVKP--CIVKGLSDFTIHG 60
           M M   EIV+V+V L++L+ +V+SQTFDS W VQ WP  VC+ +   C+ +GL  FTIHG
Sbjct: 1   MAMAKREIVLVFV-LTILFPMVKSQTFDSFWMVQHWPPAVCSFQQGRCVGQGLRSFTIHG 60

Query: 61  VWPQQGKTSVINCKGTPYDLKEISGIQSNLNKVWPDLEKGKDSAFWEYEWKKHGICSESK 120
           VWPQ+G TSVINC G  +D  +IS ++S LN  WP++  G +  FW +EW KHGICS SK
Sbjct: 61  VWPQKGGTSVINCPGPTFDFTKISHLESTLNVDWPNVITGNNKWFWGHEWNKHGICSVSK 120

Query: 121 FNEAKYFQMALNMKNNINLL---------------VEKEIRTAIKTKYGKEPGLRCKAGT 180
           F++  YFQMA+NM+N+I+LL                 + +++AI+ + GKEP LRC+ GT
Sbjct: 121 FDQQAYFQMAINMRNSIDLLSALRVGGVVPNGRSKARQRVQSAIRAQLGKEPVLRCR-GT 180

Query: 181 NVPQTLVEIVMCFDVDGITLID 186
                L+EIVMCFD DG+TLI+
Sbjct: 181 GRQSRLLEIVMCFDDDGVTLIN 200

[Close]

BLAST of Sed0025124 vs. NCBI nr
Match: XP_022142280.1 (ribonuclease MC-like [Momordica charantia])

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-46
Identity = 91/197 (46.19%), Postives = 138/197 (70.05%), Query Frame = 0


Query: 7   EIVVVW-VALSVLYSVVESQTFDSLWFVQQWPDGVCTVKP--CIVKGLSDFTIHGVWPQQ 66
           E+V+++ + +++ + VV+SQ FD+ WFVQQWP  VC  +   C+ +GL  FT+HG+WPQ+
Sbjct: 11  EVVLMFALTITIFFPVVKSQAFDNFWFVQQWPPAVCNFQQGRCVGQGLRTFTVHGLWPQK 70

Query: 67  GKTSVINCKGTPYDLKEISGIQSNLNKVWPDLEKGKDSAFWEYEWKKHGICSESKFNEAK 126
           G TSVINC GT +D  ++S +Q++LN+VWP++  G +  FW +EW KHGICSESKF+   
Sbjct: 71  GGTSVINCSGTRFDFTQVSHLQNDLNRVWPNVITGNNRFFWGHEWNKHGICSESKFDMKA 130

Query: 127 YFQMALNMKNNINLL---------------VEKEIRTAIKTKYGKEPGLRCKAGTNVPQT 186
           YFQMA+NM+++++L+                 + +++AI+ ++GKEP LRC+ GT     
Sbjct: 131 YFQMAINMRDSLDLMNALRVGGLAPNGRTKSRQRVQSAIRAQFGKEPVLRCR-GTGRNVR 190

[Close]

BLAST of Sed0025124 vs. ExPASy Swiss-Prot
Match: P23540 (Ribonuclease MC OS=Momordica charantia OX=3673 PE=1 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.5e-40
Identity = 82/182 (45.05%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 27  FDSLWFVQQWPDGVCTVK---PCIVKGLSDFTIHGVWPQQGKTSVINC-KGTPYDLKEIS 86
           FDS WFVQQWP  VC+ +    C   GL  FTIHG+WPQ   TS+ NC +G+P+D+ +IS
Sbjct: 1   FDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQGSGTSLTNCPQGSPFDITKIS 60

Query: 87  GIQSNLNKVWPDLEKGKDSAFWEYEWKKHGICSESKFNEAKYFQMALNMKNNINLL---- 146
            +QS LN +WP++ +  +  FW +EW KHG CSES FN+A YF++A++M+NN +++    
Sbjct: 61  HLQSQLNTLWPNVLRANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALR 120

Query: 147 -----------VEKEIRTAIKTKYGKEPGLRCKAGTNVPQT----LVEIVMCFDVDGITL 186
                        + I+  +K K+GK PGLRC+     PQT    LV++V CF  DG TL
Sbjct: 121 PHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTD---PQTKVSYLVQVVACFAQDGSTL 179

[Close]

BLAST of Sed0025124 vs. ExPASy Swiss-Prot
Match: P42813 (Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.9e-26
Identity = 75/215 (34.88%), Postives = 108/215 (50.23%), Query Frame = 0


Query: 1   MKMFLNEIVVVWVAL---SVLYSVVESQTFDSLWFVQQWPDGVC-TVKPCIV----KGLS 60
           MK+ L  + ++ + +   SV  +   S+ FD  +FVQQWP   C T K C      K  +
Sbjct: 1   MKILLASLCLISLLVILPSVFSASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPNSGKPAA 60

Query: 61  DFTIHGVWPQ-QGKTSVINCKGT-PYDLKEISGIQSNLNKVWPDL--EKGKDSAFWEYEW 120
           DF IHG+WP  +  T   NC  + P+D   IS + +++ K WP L    G   AFWE+EW
Sbjct: 61  DFGIHGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSGSGEAFWEHEW 120

Query: 121 KKHGICSESKFNEAKYFQMALNMKNNINLLVE---------------KEIRTAIKTKYGK 180
           +KHG CSES  ++ +YFQ ALN+K   NLL                 + IR +IK   G 
Sbjct: 121 EKHGTCSESVIDQHEYFQTALNLKQKTNLLGALTKAGINPDGKSYSLESIRDSIKESIGF 180

Query: 181 EPGLRCKAGTNVPQTLVEIVMCFDVDGITLIDRPL 189
            P + C    +    L ++ +C D  G  LI+ P+
Sbjct: 181 TPWVECNRDGSGNSQLYQVYLCVDRSGSGLIECPV 215

[Close]

BLAST of Sed0025124 vs. ExPASy Swiss-Prot
Match: P80022 (Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-25
Identity = 72/206 (34.95%), Postives = 107/206 (51.94%), Query Frame = 0


Query: 8   IVVVWVALSVLYSVVESQTFDSLWFVQQWPDGVCTVK-----PCIVKGLSDFTIHGVWPQ 67
           ++++   LSVL +   ++ FD  +FVQQWP   C  K     P   K  +DF IHG+WP 
Sbjct: 13  LLIITQCLSVLNA---AKDFDFFYFVQQWPGSYCDTKQSCCYPTTGKPAADFGIHGLWPN 72

Query: 68  QGK-TSVINC-KGTPYDLKEISGIQSNLNKVWPDL--EKGKDSAFWEYEWKKHGICSESK 127
               T   NC   +PYD  +IS + S++ + WP L    G  S FW +EW+KHG C+ES 
Sbjct: 73  NNDGTYPSNCDPNSPYDQSQISDLISSMQQNWPTLACPSGSGSTFWSHEWEKHGTCAESV 132

Query: 128 F-NEAKYFQMALNMKNNINLLVEKE---------------IRTAIKTKYGKEPGLRCKAG 187
             N+  YF+ AL++KN I+LL   +               IR AIK+  G  P ++C   
Sbjct: 133 LTNQHAYFKKALDLKNQIDLLSILQGADIHPDGESYDLVNIRNAIKSAIGYTPWIQCNVD 192

Query: 188 TNVPQTLVEIVMCFDVDGITLIDRPL 189
            +    L ++ +C D  G +LI+ P+
Sbjct: 193 QSGNSQLYQVYICVDGSGSSLIECPI 215

[Close]

BLAST of Sed0025124 vs. ExPASy Swiss-Prot
Match: P42815 (Ribonuclease 3 OS=Arabidopsis thaliana OX=3702 GN=RNS3 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.0e-21
Identity = 64/202 (31.68%), Postives = 93/202 (46.04%), Query Frame = 0


Query: 13  VALSVLYSVVESQTFDSLWFVQQWPDGVCTVK-----PCIVKGLSDFTIHGVWPQQGKTS 72
           +AL  LY    +Q FD  +FV QWP   C  +     P   K  +DF IHG+WP   KT 
Sbjct: 8   LALQQLYVQSFAQDFDFFYFVLQWPGAYCDSRHSCCYPQTGKPAADFGIHGLWPNY-KTG 67

Query: 73  --VINCK-GTPYDLKEISGIQSNLNKVWPDLE--KGKDSAFWEYEWKKHGICSESKFNEA 132
               NC   + +D   +S + S+L + WP L         FW +EW+KHG C+ES+ ++ 
Sbjct: 68  GWPQNCNPDSRFDDLRVSDLMSDLQREWPTLSCPSNDGMKFWTHEWEKHGTCAESELDQH 127

Query: 133 KYFQMALNMKNNINLL---------------VEKEIRTAIKTKYGKEPGLRCKAGTNVPQ 190
            YF+  L +K   NLL                 K+I   IK   G  PG+ C   ++   
Sbjct: 128 DYFEAGLKLKQKANLLHALTNAGIKPDDKFYEMKDIENTIKQVVGFAPGIECNKDSSHNS 187

[Close]

BLAST of Sed0025124 vs. ExPASy Swiss-Prot
Match: P80196 (Intracellular ribonuclease LX OS=Solanum lycopersicum OX=4081 GN=RNALX PE=1 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 2.6e-19
Identity = 66/213 (30.99%), Postives = 91/213 (42.72%), Query Frame = 0


Query: 1   MKMFLNEIVVVWVALSVLYSVVESQTFDSLWFVQQWPDGVCTVK-----PCIVKGLSDFT 60
           MK     ++ + V   +L   V SQ FD  +FVQQWP   C  +     P   K   DF+
Sbjct: 2   MKSQKKLLIKIIVVQCLLVLCVTSQDFDFFYFVQQWPASYCDTRRSCCYPTTGKPDEDFS 61

Query: 61  IHGVWP--QQGKTSVINCKGTPYDLKEISGIQSNLNKVWPDL--EKGKDSAFWEYEWKKH 120
           IHG+WP  + GK      + +  D  E S + S + K WP L         FW +EW KH
Sbjct: 62  IHGLWPNYKDGKWPQNCDRESSLDESEFSDLISTMEKNWPSLACPSSDGLKFWSHEWLKH 121

Query: 121 GICSESKFNEAKYFQMALNMKNNINLLVE----------------KEIRTAIKTKYGKEP 180
           G C  S  N+  YFQ AL+ K   NLL                  + I+ AI+   G  P
Sbjct: 122 GTC--SALNQHAYFQTALDFKTKSNLLQNLNNAGIKPRNGDYYGVESIKKAIEKGVGHTP 181

Query: 181 GLRCKAGTNVPQTLVEIVMCFDVDGITLIDRPL 189
            + C   +     L ++ +C D      ID P+
Sbjct: 182 FIECNVDSQGNHQLYQVYLCVDSSASKFIDCPI 212

[Close]

BLAST of Sed0025124 vs. ExPASy TrEMBL
Match: A0A6J1DQN7 (ribonuclease MC-like OS=Momordica charantia OX=3673 GN=LOC111022224 PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 7.7e-51
Identity = 100/203 (49.26%), Postives = 142/203 (69.95%), Query Frame = 0


Query: 1   MKMFLNEIVVVWV-ALSVLYSVVESQTFDSLWFVQQWPDGVCTVKP--CIVKGLSDFTIH 60
           MK    EIV ++V A+++   +V+SQTFD  WFVQQWP  VC+ +   C+ +GL  FTIH
Sbjct: 1   MKTSRREIVFMFVLAITIFLPIVKSQTFDDFWFVQQWPPAVCSFQQGRCVGQGLRTFTIH 60

Query: 61  GVWPQQGKTSVINCKGTPYDLKEISGIQSNLNKVWPDLEKGKDSAFWEYEWKKHGICSES 120
           GVWPQ+G TSV+NC GTP+D  +IS ++++LN+VWP++  G +  FW +EW KHG+CSES
Sbjct: 61  GVWPQKGGTSVVNCPGTPFDFTKISSLETDLNRVWPNVITGDNKFFWSHEWNKHGVCSES 120

Query: 121 KFNEAKYFQMALNMKNNINLL---------------VEKEIRTAIKTKYGKEPGLRCKAG 180
           KFN   YFQMA+NM+N+I+L+                ++ +++A++T +GKEP LRC+ G
Sbjct: 121 KFNMKAYFQMAINMRNSIDLMNALKVGGLAPNGLSKSKQRVQSALRTHFGKEPVLRCR-G 180

Query: 181 TNVPQTLVEIVMCFDVDGITLID 186
           T     L+EIVMCFD DG+TLI+
Sbjct: 181 TGSNIRLIEIVMCFDDDGVTLIN 202

[Close]

BLAST of Sed0025124 vs. ExPASy TrEMBL
Match: A0A0A0LC37 (Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_3G825050 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 3.6e-48
Identity = 93/196 (47.45%), Postives = 131/196 (66.84%), Query Frame = 0


Query: 7   EIVVVWVALSVLYSVVESQTFDSLWFVQQWPDGVCTVKP--CIVKGLSDFTIHGVWPQQG 66
           ++V     L++L+ +V+SQTFD  WFVQQWP  VCT++   C+ +G   FTIHG+WPQ+G
Sbjct: 8   DVVFFVFVLTILFPIVKSQTFDDFWFVQQWPPAVCTLQSGRCVGRGTRSFTIHGLWPQKG 67

Query: 67  KTSVINCKGTPYDLKEISGIQSNLNKVWPDLEKGKDSAFWEYEWKKHGICSESKFNEAKY 126
             SV NC G  +D  +I+ ++++LN VWP++  G +  FW +EW KHGICSESKF+EAKY
Sbjct: 68  GRSVTNCTGNQFDFTKIAHLENDLNVVWPNVVTGNNKFFWGHEWNKHGICSESKFDEAKY 127

Query: 127 FQMALNMKNNINLL---------------VEKEIRTAIKTKYGKEPGLRCKAGTNVPQTL 186
           FQ A+NM++ I+LL                ++ + TAI + +GK+P LRCK  +N    L
Sbjct: 128 FQTAINMRHGIDLLSVLRTGGVGPNGASKAKQRVETAISSHFGKDPILRCKKASNGQVLL 187

[Close]

BLAST of Sed0025124 vs. ExPASy TrEMBL
Match: A0A1S3B8Q3 (Ribonuclease T(2) OS=Cucumis melo OX=3656 GN=LOC103486996 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 3.0e-47
Identity = 91/202 (45.05%), Postives = 134/202 (66.34%), Query Frame = 0


Query: 1   MKMFLNEIVVVWVALSVLYSVVESQTFDSLWFVQQWPDGVCTVKP--CIVKGLSDFTIHG 60
           M+    ++V     L++L+ +V+SQTFD+ WFVQQWP  +CT++   C+ +G   FTIHG
Sbjct: 1   MEKTKRDVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHG 60

Query: 61  VWPQQGKTSVINCKGTPYDLKEISGIQSNLNKVWPDLEKGKDSAFWEYEWKKHGICSESK 120
           +WPQ+G  SV NC G  +D  +I+ ++S+LN VWP++  G +  FW +EW KHGICSESK
Sbjct: 61  LWPQKGGRSVTNCSGNSFDFTKIAHLESDLNVVWPNVVTGNNKFFWGHEWNKHGICSESK 120

Query: 121 FNEAKYFQMALNMKNNINLL---------------VEKEIRTAIKTKYGKEPGLRCKAGT 180
           F++AKYFQ A+NM+++I+LL                ++ + TAI + + K+P LRCK  +
Sbjct: 121 FDQAKYFQTAINMRHSIDLLSVLRTGGIVPNGASKAKQRVETAISSHFAKDPILRCKTAS 180

Query: 181 NVPQTLVEIVMCFDVDGITLID 186
           N    L EIV+CFD DG+TLI+
Sbjct: 181 NGQVLLTEIVICFDDDGVTLIN 202

[Close]

BLAST of Sed0025124 vs. ExPASy TrEMBL
Match: Q40115 (Ribonuclease (RNase LC1) OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 3.0e-47
Identity = 100/202 (49.50%), Postives = 136/202 (67.33%), Query Frame = 0


Query: 1   MKMFLNEIVVVWVALSVLYSVVESQTFDSLWFVQQWPDGVCTVKP--CIVKGLSDFTIHG 60
           M M   EIV+V+V L++L+ +V+SQTFDS W VQ WP  VC+ +   C+ +GL  FTIHG
Sbjct: 1   MAMAKREIVLVFV-LTILFPMVKSQTFDSFWMVQHWPPAVCSFQQGRCVGQGLRSFTIHG 60

Query: 61  VWPQQGKTSVINCKGTPYDLKEISGIQSNLNKVWPDLEKGKDSAFWEYEWKKHGICSESK 120
           VWPQ+G TSVINC G  +D  +IS ++S LN  WP++  G +  FW +EW KHGICS SK
Sbjct: 61  VWPQKGGTSVINCPGPTFDFTKISHLESTLNVDWPNVITGNNKWFWGHEWNKHGICSVSK 120

Query: 121 FNEAKYFQMALNMKNNINLL---------------VEKEIRTAIKTKYGKEPGLRCKAGT 180
           F++  YFQMA+NM+N+I+LL                 + +++AI+ + GKEP LRC+ GT
Sbjct: 121 FDQQAYFQMAINMRNSIDLLSALRVGGVVPNGRSKARQRVQSAIRAQLGKEPVLRCR-GT 180

Query: 181 NVPQTLVEIVMCFDVDGITLID 186
                L+EIVMCFD DG+TLI+
Sbjct: 181 GRQSRLLEIVMCFDDDGVTLIN 200

[Close]

BLAST of Sed0025124 vs. ExPASy TrEMBL
Match: A0A6J1CKH7 (Ribonuclease T(2) OS=Momordica charantia OX=3673 GN=LOC111012440 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 6.8e-47
Identity = 91/197 (46.19%), Postives = 138/197 (70.05%), Query Frame = 0


Query: 7   EIVVVW-VALSVLYSVVESQTFDSLWFVQQWPDGVCTVKP--CIVKGLSDFTIHGVWPQQ 66
           E+V+++ + +++ + VV+SQ FD+ WFVQQWP  VC  +   C+ +GL  FT+HG+WPQ+
Sbjct: 11  EVVLMFALTITIFFPVVKSQAFDNFWFVQQWPPAVCNFQQGRCVGQGLRTFTVHGLWPQK 70

Query: 67  GKTSVINCKGTPYDLKEISGIQSNLNKVWPDLEKGKDSAFWEYEWKKHGICSESKFNEAK 126
           G TSVINC GT +D  ++S +Q++LN+VWP++  G +  FW +EW KHGICSESKF+   
Sbjct: 71  GGTSVINCSGTRFDFTQVSHLQNDLNRVWPNVITGNNRFFWGHEWNKHGICSESKFDMKA 130

Query: 127 YFQMALNMKNNINLL---------------VEKEIRTAIKTKYGKEPGLRCKAGTNVPQT 186
           YFQMA+NM+++++L+                 + +++AI+ ++GKEP LRC+ GT     
Sbjct: 131 YFQMAINMRDSLDLMNALRVGGLAPNGRTKSRQRVQSAIRAQFGKEPVLRCR-GTGRNVR 190

[Close]

BLAST of Sed0025124 vs. TAIR 10
Match: AT2G02990.1 (ribonuclease 1 )

HSP 1 Score: 119.4 bits (298), Expect = 3.5e-27
Identity = 75/215 (34.88%), Postives = 108/215 (50.23%), Query Frame = 0


Query: 1   MKMFLNEIVVVWVAL---SVLYSVVESQTFDSLWFVQQWPDGVC-TVKPCIV----KGLS 60
           MK+ L  + ++ + +   SV  +   S+ FD  +FVQQWP   C T K C      K  +
Sbjct: 1   MKILLASLCLISLLVILPSVFSASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPNSGKPAA 60

Query: 61  DFTIHGVWPQ-QGKTSVINCKGT-PYDLKEISGIQSNLNKVWPDL--EKGKDSAFWEYEW 120
           DF IHG+WP  +  T   NC  + P+D   IS + +++ K WP L    G   AFWE+EW
Sbjct: 61  DFGIHGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSGSGEAFWEHEW 120

Query: 121 KKHGICSESKFNEAKYFQMALNMKNNINLLVE---------------KEIRTAIKTKYGK 180
           +KHG CSES  ++ +YFQ ALN+K   NLL                 + IR +IK   G 
Sbjct: 121 EKHGTCSESVIDQHEYFQTALNLKQKTNLLGALTKAGINPDGKSYSLESIRDSIKESIGF 180

Query: 181 EPGLRCKAGTNVPQTLVEIVMCFDVDGITLIDRPL 189
            P + C    +    L ++ +C D  G  LI+ P+
Sbjct: 181 TPWVECNRDGSGNSQLYQVYLCVDRSGSGLIECPV 215

[Close]

BLAST of Sed0025124 vs. TAIR 10
Match: AT1G14220.1 (Ribonuclease T2 family protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-23
Identity = 65/189 (34.39%), Postives = 89/189 (47.09%), Query Frame = 0


Query: 25  QTFDSLWFVQQWPDGVCTVK-----PCIVKGLSDFTIHGVWPQ-QGKTSVINC-KGTPYD 84
           + FD  +FV QWP   C        P   K  +DF IHG+WP   G +   NC   + +D
Sbjct: 26  EDFDFFYFVLQWPGAYCDTSRACCYPTSGKPAADFGIHGLWPNYNGGSWPSNCDPDSQFD 85

Query: 85  LKEISGIQSNLNKVWPDLE--KGKDSAFWEYEWKKHGICSESKFNEAKYFQMALNMKNNI 144
             +IS + S+L K WP L     +   FWE+EW+KHG CSES  ++ +YF+ AL +K   
Sbjct: 86  RSQISDLVSSLKKNWPTLSCPSNEGFNFWEHEWEKHGTCSESVMDQHEYFENALKLKQKA 145

Query: 145 NLLV---------------EKEIRTAIKTKYGKEPGLRCKAGTNVPQTLVEIVMCFDVDG 190
           NLL                  +I  AIK   G  PG+ C         L +I +C D  G
Sbjct: 146 NLLQILKNSGINPDDGFYNLDKITNAIKDGIGFTPGIECNKDPERNAQLHQIYICVDTSG 205

[Close]

BLAST of Sed0025124 vs. TAIR 10
Match: AT1G26820.1 (ribonuclease 3 )

HSP 1 Score: 102.1 bits (253), Expect = 5.7e-22
Identity = 64/202 (31.68%), Postives = 93/202 (46.04%), Query Frame = 0


Query: 13  VALSVLYSVVESQTFDSLWFVQQWPDGVCTVK-----PCIVKGLSDFTIHGVWPQQGKTS 72
           +AL  LY    +Q FD  +FV QWP   C  +     P   K  +DF IHG+WP   KT 
Sbjct: 8   LALQQLYVQSFAQDFDFFYFVLQWPGAYCDSRHSCCYPQTGKPAADFGIHGLWPNY-KTG 67

Query: 73  --VINCK-GTPYDLKEISGIQSNLNKVWPDLE--KGKDSAFWEYEWKKHGICSESKFNEA 132
               NC   + +D   +S + S+L + WP L         FW +EW+KHG C+ES+ ++ 
Sbjct: 68  GWPQNCNPDSRFDDLRVSDLMSDLQREWPTLSCPSNDGMKFWTHEWEKHGTCAESELDQH 127

Query: 133 KYFQMALNMKNNINLL---------------VEKEIRTAIKTKYGKEPGLRCKAGTNVPQ 190
            YF+  L +K   NLL                 K+I   IK   G  PG+ C   ++   
Sbjct: 128 DYFEAGLKLKQKANLLHALTNAGIKPDDKFYEMKDIENTIKQVVGFAPGIECNKDSSHNS 187

[Close]

BLAST of Sed0025124 vs. TAIR 10
Match: AT1G14210.1 (Ribonuclease T2 family protein )

HSP 1 Score: 93.2 bits (230), Expect = 2.7e-19
Identity = 62/199 (31.16%), Postives = 97/199 (48.74%), Query Frame = 0


Query: 10  VVWVALSVLYSVV--ESQT---FDSLWFVQQWPDGVC-TVKPCI--VKG--LSDFTIHGV 69
           ++ V+L +L S+V   SQT   F+  ++V  WP  +C + K C    KG   SDF IHG+
Sbjct: 4   IIIVSLLILQSLVVSSSQTEPDFNFFYWVNYWPGAICDSQKGCCPPTKGNTASDFIIHGL 63

Query: 70  WPQ--QGKTSVINCKGTPYDLKEISGIQSNLNKVWPDLE----KGKDSAFWEYEWKKHGI 129
           WPQ   G       +   +D+ +IS +   + K W +         ++  WE+EW KHG 
Sbjct: 64  WPQFNNGTWPAFCDQTNLFDISKISDLVCQMEKKWTEWGVWACPSNETNLWEHEWNKHGT 123

Query: 130 CSESKFNEAKYFQMALNMKNNI---NLLVEK------------EIRTAIKTKYGKEPGLR 178
           C +S F++  YF+  L  K+ +   N+L++K            EI+ AIK   G  PG+ 
Sbjct: 124 CVQSIFDQHSYFRTNLKFKHKVHLLNILIQKGIKPNDGFYSLDEIKNAIKCAIGFAPGIE 183

The following BLAST results are available for this feature:

BLAST of Sed0025124 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155091.1	1.6e-50	49.26	ribonuclease MC-like [Momordica charantia]	[more]
XP_004147499.1	7.4e-48	47.45	ribonuclease MC [Cucumis sativus] >KGN59560.1 hypothetical protein Csa_002553 [C...	[more]
XP_008443402.1	6.3e-47	45.05	PREDICTED: ribonuclease MC-like [Cucumis melo]	[more]
BAA10891.1	6.3e-47	49.50	ribonuclease (RNase LC1) [Luffa aegyptiaca]	[more]
XP_022142280.1	1.4e-46	46.19	ribonuclease MC-like [Momordica charantia]	[more]

BLAST of Sed0025124 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P23540	3.5e-40	45.05	Ribonuclease MC OS=Momordica charantia OX=3673 PE=1 SV=1	[more]
P42813	4.9e-26	34.88	Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1	[more]
P80022	1.1e-25	34.95	Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2	[more]
P42815	8.0e-21	31.68	Ribonuclease 3 OS=Arabidopsis thaliana OX=3702 GN=RNS3 PE=2 SV=1	[more]
P80196	2.6e-19	30.99	Intracellular ribonuclease LX OS=Solanum lycopersicum OX=4081 GN=RNALX PE=1 SV=2	[more]

BLAST of Sed0025124 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQN7	7.7e-51	49.26	ribonuclease MC-like OS=Momordica charantia OX=3673 GN=LOC111022224 PE=3 SV=1	[more]
A0A0A0LC37	3.6e-48	47.45	Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_3G825050 PE=3 SV=1	[more]
A0A1S3B8Q3	3.0e-47	45.05	Ribonuclease T(2) OS=Cucumis melo OX=3656 GN=LOC103486996 PE=3 SV=1	[more]
Q40115	3.0e-47	49.50	Ribonuclease (RNase LC1) OS=Luffa aegyptiaca OX=3670 PE=2 SV=1	[more]
A0A6J1CKH7	6.8e-47	46.19	Ribonuclease T(2) OS=Momordica charantia OX=3673 GN=LOC111012440 PE=3 SV=1	[more]

BLAST of Sed0025124 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02990.1	3.5e-27	34.88	ribonuclease 1	[more]
AT1G14220.1	1.4e-23	34.39	Ribonuclease T2 family protein	[more]
AT1G26820.1	5.7e-22	31.68	ribonuclease 3	[more]
AT1G14210.1	2.7e-19	31.16	Ribonuclease T2 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036430	Ribonuclease T2-like superfamily	GENE3D	3.90.730.10		coord: 20..190 e-value: 4.0E-41 score: 143.3
IPR036430	Ribonuclease T2-like superfamily	SUPERFAMILY	55895	Ribonuclease Rh-like	coord: 27..190
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 27..137 e-value: 9.2E-29 score: 100.9
IPR001568	Ribonuclease T2-like	PANTHER	PTHR11240	RIBONUCLEASE T2	coord: 15..179
None	No IPR available	PANTHER	PTHR11240:SF22	RIBONUCLEASE T2	coord: 15..179
IPR033130	Ribonuclease T2, His active site 2	PROSITE	PS00531	RNASE_T2_2	coord: 103..114
IPR033697	Ribonuclease T2, eukaryotic	CDD	cd01061	RNase_T2_euk	coord: 27..185 e-value: 2.09725E-53 score: 167.894

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0025124.1	Sed0025124.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016070	RNA metabolic process
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding