Sed0024816 (gene) Chayote v1

Overview


Name	Sed0024816
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Calcium-binding EF-hand family protein
Location	LG03: 5473152 .. 5473403 (-)
RNA-Seq Expression	Sed0024816
Synteny	Sed0024816

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAGGATCAAGACCAAGCTGAGCGAGATCGTATTTTCAAGCGCTTCGACGCCAATGGCGATGGTAAGATCTCTTCAGCCGAACTCGGGGAAGCCTTGAAGACACTCGGCTCTGTCACTGCCGACGAAGTTCAGCGGATGATGGCCGAGATCGATACCGATGGCGACGGGTTCATTTCTTACGAAGAGTTCACAGATTTCGCATGTGCCAACCGTGGATTAGTCAAGGATGTTGCAAAGATATTTTAA

mRNA sequence

ATGGCTGAGGATCAAGACCAAGCTGAGCGAGATCGTATTTTCAAGCGCTTCGACGCCAATGGCGATGGTAAGATCTCTTCAGCCGAACTCGGGGAAGCCTTGAAGACACTCGGCTCTGTCACTGCCGACGAAGTTCAGCGGATGATGGCCGAGATCGATACCGATGGCGACGGGTTCATTTCTTACGAAGAGTTCACAGATTTCGCATGTGCCAACCGTGGATTAGTCAAGGATGTTGCAAAGATATTTTAA

Coding sequence (CDS)

ATGGCTGAGGATCAAGACCAAGCTGAGCGAGATCGTATTTTCAAGCGCTTCGACGCCAATGGCGATGGTAAGATCTCTTCAGCCGAACTCGGGGAAGCCTTGAAGACACTCGGCTCTGTCACTGCCGACGAAGTTCAGCGGATGATGGCCGAGATCGATACCGATGGCGACGGGTTCATTTCTTACGAAGAGTTCACAGATTTCGCATGTGCCAACCGTGGATTAGTCAAGGATGTTGCAAAGATATTTTAA

Protein sequence

MAEDQDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF

Homology

[Close]

BLAST of Sed0024816 vs. NCBI nr
Match: XP_004140303.1 (polcalcin Ole e 3 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 1.2e-33
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MA+D QDQAER+RIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFACANRGLVKDVAKIF 84
          ISYEEFTDFA ANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of Sed0024816 vs. NCBI nr
Match: XP_016902555.1 (PREDICTED: polcalcin Ole e 3 [Cucumis melo] >KAA0062328.1 polcalcin Ole e 3 [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 2.7e-33
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MA+D QDQAER+RIFKRFDANGDGKISS+ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSSELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFACANRGLVKDVAKIF 84
          ISYEEFTDFA ANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of Sed0024816 vs. NCBI nr
Match: XP_038875780.1 (polcalcin Ole e 3 [Benincasa hispida])

HSP 1 Score: 150.6 bits (379), Expect = 6.0e-33
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MA+D QDQAER+RIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFACANRGLVKDVAKIF 84
          ISYEEFTDFA ANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of Sed0024816 vs. NCBI nr
Match: XP_022141635.1 (polcalcin Bet v 4 [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 7.8e-33
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MA+D QD+ ERDRIFKRFDANGDGKIS+AELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFACANRGLVKDVAKIF 84
          ISYEEFTDFA ANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of Sed0024816 vs. NCBI nr
Match: KAE8648431.1 (hypothetical protein Csa_008561 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 6   DQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEF 65
           DQAER+RIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEF
Sbjct: 354 DQAERERIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEF 413

Query: 66  TDFACANRGLVKDVAKIF 84
           TDFA ANRGLVKDVAKIF
Sbjct: 414 TDFARANRGLVKDVAKIF 431

[Close]

BLAST of Sed0024816 vs. ExPASy Swiss-Prot
Match: Q39419 (Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.1e-32
Identity = 70/85 (82.35%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MAED--QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDG 60
          MA+D  QD+AER+RIFKRFDANGDGKIS+AELGEALKTLGS+T DEV+ MMAEIDTDGDG
Sbjct: 1  MADDHPQDKAERERIFKRFDANGDGKISAAELGEALKTLGSITPDEVKHMMAEIDTDGDG 60

Query: 61 FISYEEFTDFACANRGLVKDVAKIF 84
          FIS++EFTDF  ANRGL+KDVAKIF
Sbjct: 61 FISFQEFTDFGRANRGLLKDVAKIF 85

[Close]

BLAST of Sed0024816 vs. ExPASy Swiss-Prot
Match: Q84V36 (Polcalcin Che a 3 OS=Chenopodium album OX=3559 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.0e-31
Identity = 70/84 (83.33%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 2  AED--QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 61
          AED  QD A+R+RIFKRFD NGDGKISS+ELG+ALKTLGSVT DEV+RMMAEIDTDGDGF
Sbjct: 3  AEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGF 62

Query: 62 ISYEEFTDFACANRGLVKDVAKIF 84
          IS++EFTDFA ANRGLVKDV+KIF
Sbjct: 63 ISFDEFTDFARANRGLVKDVSKIF 86

[Close]

BLAST of Sed0024816 vs. ExPASy Swiss-Prot
Match: O81092 (Polcalcin Ole e 3 OS=Olea europaea OX=4146 GN=OLE3 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.4e-31
Identity = 70/84 (83.33%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 1  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MA+D Q+ AE +RIFKRFDANGDGKISS+ELGE LKTLGSVT +E+QRMMAEIDTDGDGF
Sbjct: 1  MADDPQEVAEHERIFKRFDANGDGKISSSELGETLKTLGSVTPEEIQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFACANRGLVKDVAKIF 84
          IS+EEFT FA ANRGLVKDVAKIF
Sbjct: 61 ISFEEFTVFARANRGLVKDVAKIF 84

[Close]

BLAST of Sed0024816 vs. ExPASy Swiss-Prot
Match: Q9LF54 (Probable calcium-binding protein CML29 OS=Arabidopsis thaliana OX=3702 GN=CML29 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 4.4e-31
Identity = 68/83 (81.93%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MAEDQDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFI 60
          MA+  ++AE DRIFK+FDANGDGKIS+AEL EALKTLGSVTAD+V+RMMAEIDTDGDG I
Sbjct: 1  MADATEKAEHDRIFKKFDANGDGKISAAELEEALKTLGSVTADDVKRMMAEIDTDGDGNI 60

Query: 61 SYEEFTDFACANRGLVKDVAKIF 84
          SY+EFTDFA ANRGL+KDVAKIF
Sbjct: 61 SYQEFTDFAGANRGLMKDVAKIF 83

[Close]

BLAST of Sed0024816 vs. ExPASy Swiss-Prot
Match: Q8VWY6 (Polcalcin Nic t 1 OS=Nicotiana tabacum OX=4097 GN=Nict1 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 7.6e-31
Identity = 68/84 (80.95%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MAED QD A+R+RIFKRFD NGDGKISSAELGE LK LGSVT++EVQ MMAE+DTDGDGF
Sbjct: 1  MAEDPQDIADRERIFKRFDLNGDGKISSAELGETLKMLGSVTSEEVQHMMAELDTDGDGF 60

Query: 61 ISYEEFTDFACANRGLVKDVAKIF 84
          ISYEEF +FA ANRGL+KDVAK+F
Sbjct: 61 ISYEEFEEFARANRGLIKDVAKVF 84

[Close]

BLAST of Sed0024816 vs. ExPASy TrEMBL
Match: A0A0A0KQB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G420320 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.8e-34
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MA+D QDQAER+RIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFACANRGLVKDVAKIF 84
          ISYEEFTDFA ANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of Sed0024816 vs. ExPASy TrEMBL
Match: A0A5A7V407 (Polcalcin Ole e 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00810 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-33
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MA+D QDQAER+RIFKRFDANGDGKISS+ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSSELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFACANRGLVKDVAKIF 84
          ISYEEFTDFA ANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of Sed0024816 vs. ExPASy TrEMBL
Match: A0A1S4E3J8 (polcalcin Ole e 3 OS=Cucumis melo OX=3656 GN=LOC103499320 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-33
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MA+D QDQAER+RIFKRFDANGDGKISS+ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSSELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFACANRGLVKDVAKIF 84
          ISYEEFTDFA ANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of Sed0024816 vs. ExPASy TrEMBL
Match: A0A6J1CIN1 (polcalcin Bet v 4 OS=Momordica charantia OX=3673 GN=LOC111011942 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.8e-33
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MA+D QD+ ERDRIFKRFDANGDGKIS+AELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISYEEFTDFACANRGLVKDVAKIF 84
          ISYEEFTDFA ANRGLVKDVAKIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of Sed0024816 vs. ExPASy TrEMBL
Match: A0A7N0TTI6 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.2e-31
Identity = 74/84 (88.10%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MA+D QDQAER+RIFKRFDANGDGKISS+ELGEALK+LGSVTADEVQRMM EIDTDGDGF
Sbjct: 1  MADDAQDQAERERIFKRFDANGDGKISSSELGEALKSLGSVTADEVQRMMKEIDTDGDGF 60

Query: 61 ISYEEFTDFACANRGLVKDVAKIF 84
          ISY+EFT+FA ANRGLVKDVAK+F
Sbjct: 61 ISYDEFTEFAKANRGLVKDVAKVF 84

[Close]

BLAST of Sed0024816 vs. TAIR 10
Match: AT5G17480.1 (pollen calcium-binding protein 1 )

HSP 1 Score: 134.8 bits (338), Expect = 3.2e-32
Identity = 68/83 (81.93%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 1  MAEDQDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFI 60
          MA+  ++AE DRIFK+FDANGDGKIS+AEL EALKTLGSVTAD+V+RMMAEIDTDGDG I
Sbjct: 1  MADATEKAEHDRIFKKFDANGDGKISAAELEEALKTLGSVTADDVKRMMAEIDTDGDGNI 60

Query: 61 SYEEFTDFACANRGLVKDVAKIF 84
          SY+EFTDFA ANRGL+KDVAKIF
Sbjct: 61 SYQEFTDFAGANRGLMKDVAKIF 83

[Close]

BLAST of Sed0024816 vs. TAIR 10
Match: AT3G03430.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 131.3 bits (329), Expect = 3.5e-31
Identity = 63/83 (75.90%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MAEDQDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFI 60
          MA+  ++AE DRIFK+FDANGDGKIS+AELG+ALK LGSVT ++++RMMAEIDTDGDG+I
Sbjct: 1  MADATEKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGYI 60

Query: 61 SYEEFTDFACANRGLVKDVAKIF 84
          SY+EF DFA ANRGL+KDVAKIF
Sbjct: 61 SYQEFIDFASANRGLMKDVAKIF 83

[Close]

BLAST of Sed0024816 vs. TAIR 10
Match: AT1G73630.1 (EF hand calcium-binding protein family )

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 9  ERDRIFKRFDANGDGKISSAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISYEEFTD 68
          E  ++F +FDANGDGKIS +ELG   K++G S T +E+ R++ EID D DGFI+ EEF  
Sbjct: 20 ELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQEEFAT 79

Query: 69 FACANRGLVK 78
             ++   V+
Sbjct: 80 ICRSSSSAVE 89

[Close]

BLAST of Sed0024816 vs. TAIR 10
Match: AT1G24620.1 (EF hand calcium-binding protein family )

HSP 1 Score: 63.9 bits (154), Expect = 6.8e-11
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 9  ERDRIFKRFDANGDGKISSAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISYEEFTD 68
          E + +FK+FD NGDGKISS ELG  + +LG  V  +E+++ + EID  GDG+I++EEF +
Sbjct: 37 ELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFVE 96

[Close]

BLAST of Sed0024816 vs. TAIR 10
Match: AT1G18210.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 60.5 bits (145), Expect = 7.6e-10
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 9  ERDRIFKRFDANGDGKISSAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISYEEFT 67
          E  ++F +FD+NGDGKIS  ELG   K +G S T  E+ R++ E+DTD DG+I+ +EF+
Sbjct: 23 ELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYINLDEFS 81

The following BLAST results are available for this feature:

BLAST of Sed0024816 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140303.1	1.2e-33	95.24	polcalcin Ole e 3 [Cucumis sativus]	[more]
XP_016902555.1	2.7e-33	94.05	PREDICTED: polcalcin Ole e 3 [Cucumis melo] >KAA0062328.1 polcalcin Ole e 3 [Cuc...	[more]
XP_038875780.1	6.0e-33	92.86	polcalcin Ole e 3 [Benincasa hispida]	[more]
XP_022141635.1	7.8e-33	92.86	polcalcin Bet v 4 [Momordica charantia]	[more]
KAE8648431.1	1.3e-32	97.44	hypothetical protein Csa_008561 [Cucumis sativus]	[more]

BLAST of Sed0024816 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39419	3.1e-32	82.35	Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1	[more]
Q84V36	2.0e-31	83.33	Polcalcin Che a 3 OS=Chenopodium album OX=3559 PE=1 SV=1	[more]
O81092	3.4e-31	83.33	Polcalcin Ole e 3 OS=Olea europaea OX=4146 GN=OLE3 PE=1 SV=1	[more]
Q9LF54	4.4e-31	81.93	Probable calcium-binding protein CML29 OS=Arabidopsis thaliana OX=3702 GN=CML29 ...	[more]
Q8VWY6	7.6e-31	80.95	Polcalcin Nic t 1 OS=Nicotiana tabacum OX=4097 GN=Nict1 PE=1 SV=1	[more]

BLAST of Sed0024816 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQB8	5.8e-34	95.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G420320 PE=4 SV=1	[more]
A0A5A7V407	1.3e-33	94.05	Polcalcin Ole e 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00...	[more]
A0A1S4E3J8	1.3e-33	94.05	polcalcin Ole e 3 OS=Cucumis melo OX=3656 GN=LOC103499320 PE=4 SV=1	[more]
A0A6J1CIN1	3.8e-33	92.86	polcalcin Bet v 4 OS=Momordica charantia OX=3673 GN=LOC111011942 PE=4 SV=1	[more]
A0A7N0TTI6	1.2e-31	88.10	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]

BLAST of Sed0024816 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17480.1	3.2e-32	81.93	pollen calcium-binding protein 1	[more]
AT3G03430.1	3.5e-31	75.90	Calcium-binding EF-hand family protein	[more]
AT1G73630.1	2.4e-11	47.14	EF hand calcium-binding protein family	[more]
AT1G24620.1	6.8e-11	50.00	EF hand calcium-binding protein family	[more]
AT1G18210.1	7.6e-10	49.15	Calcium-binding EF-hand family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 44..72 e-value: 2.3E-4 score: 30.5 coord: 9..37 e-value: 1.4E-4 score: 31.2
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 12..68 e-value: 9.8E-15 score: 54.8
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 43..75 score: 11.640179
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 5..40 score: 14.373928
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 12..68 e-value: 1.25855E-16 score: 65.2617
None	No IPR available	GENE3D	1.10.238.10		coord: 2..83 e-value: 3.8E-26 score: 92.8
None	No IPR available	PANTHER	PTHR23064:SF60	POLCALCIN NIC T 1	coord: 1..83
None	No IPR available	PANTHER	PTHR23064	TROPONIN	coord: 1..83
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 18..30
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 53..65
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 11..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024816.1	Sed0024816.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding