Sed0024301 (gene) Chayote v1

Overview


Name	Sed0024301
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Tetratricopeptide-like helical
Location	LG07: 17855834 .. 17856199 (-)
RNA-Seq Expression	Sed0024301
Synteny	Sed0024301

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCTCTAGAAGCTTTGGCAATGGCGGGGATTGATCACAATGAGTGGGGTGTGGATGCCGATGAATGGGGAAGGAGTATTGATTCCAACGACGACATTCCCCCGCATTTATTAGCCGATGAAGACGACGACGATGATGTAACAAGTACTATGTTTCCAGCCTCCGGATTCTGCCGCCAGAAAGATGACGGTGGTGGTGGAGTGTACTGCTCTCCGGTGATCATGTGCCATTTCAGTATAGATATAGAGAAAAAAGTTTTGAATTGCGTGAGCTCAGTACGAACAATGGCTAGAGCTATTTTAGGGTTCTTTATGGTGATGACCATAAAGAAAATAACTTCAAAAGGATCCCAATCCTAA

mRNA sequence

ATGTCGGTTTCTCTAGAAGCTTTGGCAATGGCGGGGATTGATCACAATGAGTGGGGTGTGGATGCCGATGAATGGGGAAGGAGTATTGATTCCAACGACGACATTCCCCCGCATTTATTAGCCGATGAAGACGACGACGATGATGTAACAAGTACTATGTTTCCAGCCTCCGGATTCTGCCGCCAGAAAGATGACGGTGGTGGTGGAGTGTACTGCTCTCCGGTGATCATGTGCCATTTCAGTATAGATATAGAGAAAAAAGTTTTGAATTGCGTGAGCTCAGTACGAACAATGGCTAGAGCTATTTTAGGGTTCTTTATGGTGATGACCATAAAGAAAATAACTTCAAAAGGATCCCAATCCTAA

Coding sequence (CDS)

ATGTCGGTTTCTCTAGAAGCTTTGGCAATGGCGGGGATTGATCACAATGAGTGGGGTGTGGATGCCGATGAATGGGGAAGGAGTATTGATTCCAACGACGACATTCCCCCGCATTTATTAGCCGATGAAGACGACGACGATGATGTAACAAGTACTATGTTTCCAGCCTCCGGATTCTGCCGCCAGAAAGATGACGGTGGTGGTGGAGTGTACTGCTCTCCGGTGATCATGTGCCATTTCAGTATAGATATAGAGAAAAAAGTTTTGAATTGCGTGAGCTCAGTACGAACAATGGCTAGAGCTATTTTAGGGTTCTTTATGGTGATGACCATAAAGAAAATAACTTCAAAAGGATCCCAATCCTAA

Protein sequence

MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDDVTSTMFPASGFCRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFMVMTIKKITSKGSQS

Homology

[Close]

BLAST of Sed0024301 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 137.1 bits (344), Expect = 1.0e-28
Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDDVTSTMFPASG-F 60
           MSVSLEALAMAGID NEW +DA+EW R+ +   DIPPHLLADEDD++D  ST FPA+   
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERN-EMEKDIPPHLLADEDDEEDEMSTKFPATRCS 60

Query: 61  CRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFMVMTIKKITSKGS 120
           C +KDDG GGV CSP IM H     EK+ LNC+SS+  +  A++GF M MTIK I SK S
Sbjct: 61  CCRKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIASKRS 120

Query: 121 QS 122
           +S
Sbjct: 121 KS 121

[Close]

BLAST of Sed0024301 vs. NCBI nr
Match: KAG6600647.1 (hypothetical protein SDJN03_05880, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-25
Identity = 70/122 (57.38%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDDVTSTMFPASG-F 60
           MSVSLEALAMAGID NE  +DA+EW R+ +   +IPPHLLADED+++D  ST FPA+   
Sbjct: 1   MSVSLEALAMAGIDSNERAMDAEEWERN-EMEKNIPPHLLADEDNEEDEMSTKFPATRCS 60

Query: 61  CRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFMVMTIKKITSKGS 120
           C +KD+G GGV CSP IM H     EK+ LNC+SS+  +  A++GF M MTIK I SK S
Sbjct: 61  CCRKDEGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIASKRS 120

Query: 121 QS 122
           +S
Sbjct: 121 KS 121

[Close]

BLAST of Sed0024301 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-21
Identity = 66/127 (51.97%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD-VTSTM----FP 60
           MSVSLEALAMAGI  NEW +DA+EW R+ +  +D+PPHLLADEDDDDD VTST+    FP
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERN-EIENDVPPHLLADEDDDDDNVTSTVSNYSFP 60

Query: 61  ASGF---CRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFMVMTIK 120
            +GF    R++D G   ++C   I+C  S  +EK+  N +SSVR + R ILGF +V  +K
Sbjct: 61  VAGFFDSLRREDGGAHDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKILK 120

[Close]

BLAST of Sed0024301 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.1 bits (279), Expect = 3.4e-21
Identity = 65/127 (51.18%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD-VTSTM----FP 60
           MSVSLEALAMAGI  NEW +DA+EW R+ +  +D+PPHLLADEDDDDD VTST+    FP
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERN-EIENDVPPHLLADEDDDDDNVTSTVSNYSFP 60

Query: 61  ASGF---CRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFMVMTIK 120
            +GF     ++D G   ++C   I+C  S  +EK+  N +SSVR + R ILGF +V  +K
Sbjct: 61  VAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKILK 120

[Close]

BLAST of Sed0024301 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 6.7e-17
Identity = 65/133 (48.87%), Postives = 83/133 (62.41%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD---VTSTMFPAS 60
           MSVSLEALAMAGID NEWG+DA EW R  +  D +PPHLLADE+DD+D   VTST+   S
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWER--NEIDVVPPHLLADEEDDEDGEYVTSTI---S 60

Query: 61  GFC----------RQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFM 120
            +C          R++D    G      I    S  IEK+  N ++SVR + R ILGF M
Sbjct: 61  NYCFRVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLM 120

[Close]

BLAST of Sed0024301 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.8e-29
Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDDVTSTMFPASG-F 60
           MSVSLEALAMAGID NEW +DA+EW R+ +   DIPPHLLADEDD++D  ST FPA+   
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERN-EMEKDIPPHLLADEDDEEDEMSTKFPATRCS 60

Query: 61  CRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFMVMTIKKITSKGS 120
           C +KDDG GGV CSP IM H     EK+ LNC+SS+  +  A++GF M MTIK I SK S
Sbjct: 61  CCRKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIASKRS 120

Query: 121 QS 122
           +S
Sbjct: 121 KS 121

[Close]

BLAST of Sed0024301 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.0e-18
Identity = 68/135 (50.37%), Postives = 84/135 (62.22%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD-----VTSTM-- 60
           MSVSLEALAMAGID NEW +DA+EW R  +  D +PPHLLADE+DD+D      TST+  
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWER--NEIDVVPPHLLADEEDDEDGDEHVTTSTISN 60

Query: 61  --FPASGFCRQ------KDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGF 120
             FP  G          K DGG G +    I C  S  IEK+  N +SSVR + R ILGF
Sbjct: 61  YCFPVDGSFEGWRGRDCKADGGHG-HGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGF 120

[Close]

BLAST of Sed0024301 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.2e-17
Identity = 65/133 (48.87%), Postives = 83/133 (62.41%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD---VTSTMFPAS 60
           MSVSLEALAMAGID NEWG+DA EW R  +  D +PPHLLADE+DD+D   VTST+   S
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWER--NEIDVVPPHLLADEEDDEDGEYVTSTI---S 60

Query: 61  GFC----------RQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFM 120
            +C          R++D    G      I    S  IEK+  N ++SVR + R ILGF M
Sbjct: 61  NYCFRVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLM 120

[Close]

BLAST of Sed0024301 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.7e-16
Identity = 62/123 (50.41%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD---VTSTMFPAS 60
           MSVSLEALAMAGID NEWG+DA EW R  +  D +PPHLLADE+DD+D   VTST+   S
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWER--NEIDVVPPHLLADEEDDEDGEYVTSTI---S 60

Query: 61  GFC----------RQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFM 111
            +C          R++D    G +    I    S  IEK+  N ++SVR + R ILGF M
Sbjct: 61  NYCFRVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLM 118

[Close]

BLAST of Sed0024301 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.0e-07
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1  MSVSLEALAMAGIDHNEWGVDADEW---GRSIDSNDDIPPHLLADEDDDDDVTSTMFPAS 60
          M VSLEALAMAGID NEW +DA+EW      ++++D IPPHLLADE D++++ +     S
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADE-DEENIAAKELCIS 60

Query: 61 GFCRQKDDG 67
          G   +KDDG
Sbjct: 61 G--HRKDDG 66

The following BLAST results are available for this feature:

BLAST of Sed0024301 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943015.1	1.0e-28	60.66	uncharacterized protein LOC111447880 [Cucurbita moschata]	[more]
KAG6600647.1	1.8e-25	57.38	hypothetical protein SDJN03_05880, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6577295.1	1.2e-21	51.97	hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7015383.1	3.4e-21	51.18	hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro...	[more]
TYK16880.1	6.7e-17	48.87	Tetratricopeptide-like helical [Cucumis melo var. makuwa]	[more]

BLAST of Sed0024301 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0024301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FX98	4.8e-29	60.66	uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478...	[more]
A0A0A0KWE7	5.0e-18	50.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1	[more]
A0A5D3CZU0	3.2e-17	48.87	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TS68	4.7e-16	50.41	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0A0KU90	1.0e-07	53.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1	[more]

BLAST of Sed0024301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0024301.1	Sed0024301.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane