Sed0024301 (gene) Chayote v1

Overview
NameSed0024301
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTetratricopeptide-like helical
LocationLG07: 17855834 .. 17856199 (-)
RNA-Seq ExpressionSed0024301
SyntenySed0024301
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTTTCTCTAGAAGCTTTGGCAATGGCGGGGATTGATCACAATGAGTGGGGTGTGGATGCCGATGAATGGGGAAGGAGTATTGATTCCAACGACGACATTCCCCCGCATTTATTAGCCGATGAAGACGACGACGATGATGTAACAAGTACTATGTTTCCAGCCTCCGGATTCTGCCGCCAGAAAGATGACGGTGGTGGTGGAGTGTACTGCTCTCCGGTGATCATGTGCCATTTCAGTATAGATATAGAGAAAAAAGTTTTGAATTGCGTGAGCTCAGTACGAACAATGGCTAGAGCTATTTTAGGGTTCTTTATGGTGATGACCATAAAGAAAATAACTTCAAAAGGATCCCAATCCTAA

mRNA sequence

ATGTCGGTTTCTCTAGAAGCTTTGGCAATGGCGGGGATTGATCACAATGAGTGGGGTGTGGATGCCGATGAATGGGGAAGGAGTATTGATTCCAACGACGACATTCCCCCGCATTTATTAGCCGATGAAGACGACGACGATGATGTAACAAGTACTATGTTTCCAGCCTCCGGATTCTGCCGCCAGAAAGATGACGGTGGTGGTGGAGTGTACTGCTCTCCGGTGATCATGTGCCATTTCAGTATAGATATAGAGAAAAAAGTTTTGAATTGCGTGAGCTCAGTACGAACAATGGCTAGAGCTATTTTAGGGTTCTTTATGGTGATGACCATAAAGAAAATAACTTCAAAAGGATCCCAATCCTAA

Coding sequence (CDS)

ATGTCGGTTTCTCTAGAAGCTTTGGCAATGGCGGGGATTGATCACAATGAGTGGGGTGTGGATGCCGATGAATGGGGAAGGAGTATTGATTCCAACGACGACATTCCCCCGCATTTATTAGCCGATGAAGACGACGACGATGATGTAACAAGTACTATGTTTCCAGCCTCCGGATTCTGCCGCCAGAAAGATGACGGTGGTGGTGGAGTGTACTGCTCTCCGGTGATCATGTGCCATTTCAGTATAGATATAGAGAAAAAAGTTTTGAATTGCGTGAGCTCAGTACGAACAATGGCTAGAGCTATTTTAGGGTTCTTTATGGTGATGACCATAAAGAAAATAACTTCAAAAGGATCCCAATCCTAA

Protein sequence

MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDDVTSTMFPASGFCRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFMVMTIKKITSKGSQS
Homology
BLAST of Sed0024301 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 137.1 bits (344), Expect = 1.0e-28
Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDDVTSTMFPASG-F 60
           MSVSLEALAMAGID NEW +DA+EW R+ +   DIPPHLLADEDD++D  ST FPA+   
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERN-EMEKDIPPHLLADEDDEEDEMSTKFPATRCS 60

Query: 61  CRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFMVMTIKKITSKGS 120
           C +KDDG GGV CSP IM H     EK+ LNC+SS+  +  A++GF M MTIK I SK S
Sbjct: 61  CCRKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIASKRS 120

Query: 121 QS 122
           +S
Sbjct: 121 KS 121

BLAST of Sed0024301 vs. NCBI nr
Match: KAG6600647.1 (hypothetical protein SDJN03_05880, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-25
Identity = 70/122 (57.38%), Postives = 88/122 (72.13%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDDVTSTMFPASG-F 60
           MSVSLEALAMAGID NE  +DA+EW R+ +   +IPPHLLADED+++D  ST FPA+   
Sbjct: 1   MSVSLEALAMAGIDSNERAMDAEEWERN-EMEKNIPPHLLADEDNEEDEMSTKFPATRCS 60

Query: 61  CRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFMVMTIKKITSKGS 120
           C +KD+G GGV CSP IM H     EK+ LNC+SS+  +  A++GF M MTIK I SK S
Sbjct: 61  CCRKDEGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIASKRS 120

Query: 121 QS 122
           +S
Sbjct: 121 KS 121

BLAST of Sed0024301 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-21
Identity = 66/127 (51.97%), Postives = 87/127 (68.50%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD-VTSTM----FP 60
           MSVSLEALAMAGI  NEW +DA+EW R+ +  +D+PPHLLADEDDDDD VTST+    FP
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERN-EIENDVPPHLLADEDDDDDNVTSTVSNYSFP 60

Query: 61  ASGF---CRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFMVMTIK 120
            +GF    R++D G   ++C   I+C  S  +EK+  N +SSVR + R ILGF +V  +K
Sbjct: 61  VAGFFDSLRREDGGAHDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKILK 120

BLAST of Sed0024301 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.1 bits (279), Expect = 3.4e-21
Identity = 65/127 (51.18%), Postives = 86/127 (67.72%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD-VTSTM----FP 60
           MSVSLEALAMAGI  NEW +DA+EW R+ +  +D+PPHLLADEDDDDD VTST+    FP
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERN-EIENDVPPHLLADEDDDDDNVTSTVSNYSFP 60

Query: 61  ASGF---CRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFMVMTIK 120
            +GF     ++D G   ++C   I+C  S  +EK+  N +SSVR + R ILGF +V  +K
Sbjct: 61  VAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKILK 120

BLAST of Sed0024301 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 6.7e-17
Identity = 65/133 (48.87%), Postives = 83/133 (62.41%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD---VTSTMFPAS 60
           MSVSLEALAMAGID NEWG+DA EW R  +  D +PPHLLADE+DD+D   VTST+   S
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWER--NEIDVVPPHLLADEEDDEDGEYVTSTI---S 60

Query: 61  GFC----------RQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFM 120
            +C          R++D    G      I    S  IEK+  N ++SVR + R ILGF M
Sbjct: 61  NYCFRVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLM 120

BLAST of Sed0024301 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.8e-29
Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDDVTSTMFPASG-F 60
           MSVSLEALAMAGID NEW +DA+EW R+ +   DIPPHLLADEDD++D  ST FPA+   
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERN-EMEKDIPPHLLADEDDEEDEMSTKFPATRCS 60

Query: 61  CRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFMVMTIKKITSKGS 120
           C +KDDG GGV CSP IM H     EK+ LNC+SS+  +  A++GF M MTIK I SK S
Sbjct: 61  CCRKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIASKRS 120

Query: 121 QS 122
           +S
Sbjct: 121 KS 121

BLAST of Sed0024301 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.0e-18
Identity = 68/135 (50.37%), Postives = 84/135 (62.22%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD-----VTSTM-- 60
           MSVSLEALAMAGID NEW +DA+EW R  +  D +PPHLLADE+DD+D      TST+  
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWER--NEIDVVPPHLLADEEDDEDGDEHVTTSTISN 60

Query: 61  --FPASGFCRQ------KDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGF 120
             FP  G          K DGG G +    I C  S  IEK+  N +SSVR + R ILGF
Sbjct: 61  YCFPVDGSFEGWRGRDCKADGGHG-HGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGF 120

BLAST of Sed0024301 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.2e-17
Identity = 65/133 (48.87%), Postives = 83/133 (62.41%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD---VTSTMFPAS 60
           MSVSLEALAMAGID NEWG+DA EW R  +  D +PPHLLADE+DD+D   VTST+   S
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWER--NEIDVVPPHLLADEEDDEDGEYVTSTI---S 60

Query: 61  GFC----------RQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFM 120
            +C          R++D    G      I    S  IEK+  N ++SVR + R ILGF M
Sbjct: 61  NYCFRVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLM 120

BLAST of Sed0024301 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.7e-16
Identity = 62/123 (50.41%), Postives = 76/123 (61.79%), Query Frame = 0

Query: 1   MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD---VTSTMFPAS 60
           MSVSLEALAMAGID NEWG+DA EW R  +  D +PPHLLADE+DD+D   VTST+   S
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWER--NEIDVVPPHLLADEEDDEDGEYVTSTI---S 60

Query: 61  GFC----------RQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFM 111
            +C          R++D    G +    I    S  IEK+  N ++SVR + R ILGF M
Sbjct: 61  NYCFRVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLM 118

BLAST of Sed0024301 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.0e-07
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 0

Query: 1  MSVSLEALAMAGIDHNEWGVDADEW---GRSIDSNDDIPPHLLADEDDDDDVTSTMFPAS 60
          M VSLEALAMAGID NEW +DA+EW      ++++D IPPHLLADE D++++ +     S
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADE-DEENIAAKELCIS 60

Query: 61 GFCRQKDDG 67
          G   +KDDG
Sbjct: 61 G--HRKDDG 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022943015.11.0e-2860.66uncharacterized protein LOC111447880 [Cucurbita moschata][more]
KAG6600647.11.8e-2557.38hypothetical protein SDJN03_05880, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6577295.11.2e-2151.97hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7015383.13.4e-2151.18hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro... [more]
TYK16880.16.7e-1748.87Tetratricopeptide-like helical [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FX984.8e-2960.66uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478... [more]
A0A0A0KWE75.0e-1850.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1[more]
A0A5D3CZU03.2e-1748.87Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7TS684.7e-1650.41Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A0A0KU901.0e-0753.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0024301.1Sed0024301.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane