Sed0023452 (gene) Chayote v1

Overview


Name	Sed0023452
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerases II and IV subunit 5A-like
Location	LG01: 14768640 .. 14770460 (-)
RNA-Seq Expression	Sed0023452
Synteny	Sed0023452

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTGCCAGAGGAGGAAATCAGCAGACTCTTTCGAATCCGAAAAACGGTGATGGAGATGCTGAGAGACCGATGCTACTTTGTTGGAGACTCCGAGATTGAAATGTCAAGACAACAATTTATGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTTGTTATCAATAAAGCCAAGAGAAATAACAGCTCTGACCAGGTATAGTCTCATGCCATACAATGAGACGAGCGCAGGTGCCCCGAGAATATAGCGGGGCAAAGCTCCGATTTCCAGTTGTCAATAAAAAAAATTGCAGTTTCTATTTCAGTTATTCTCAAGTAGTTTGACATGTCAAATACAATAGTTTCAGTAGTTTATTATTTGGTAAATATTTCCCAAGTTTATATAAAGTTTAGCTATAGGAATTTATAGGTTATTTGATAAATACTTTTCTGTTCCCTTCCACTTATATATGCTTTTTATTTATACAGATATATATATTTTTTCCTGAAGCTCCGAAGGTTGGTGTGAAGATAGTACAAACGTATCTTCAACGTATGAAATCAGATAATGTTTGTAGTGCGATATTGGTTGTTAAAGTGAATTTGACCCCATTTGCTCGCAATTATGTAAGCGTTATTCCTTCTACATTTCACTTGGAGGTTTTCCAGGTAAAAGTTGAATCTCTGAATTCTTTTTGAGTCTTTGAATGTTGGTTTGAATATAATTATATCATCATATGCTAGAAATTCAATGATAGCCATTGGGATCTTCTTTGCTCCTATGCTAAAACTAGTTCTCATACTCTAGTTCTGCTCTCTCATAACAACTGTGAGTATGAAAATGCAATTCGGGAGGGGCCCGGGGGTGTTTTCGGCCTTAAAAACGGTTATTTACTCCCCGTTTGATAACTATTTTGTTTTTGGTTTTTAAAATTTAAGCTTATTTCTACTCATATTTCCTACGATGTGCTCTATCTTTCCTTCTATTTATCTAGTTTTCTATAAGAAAGTATGTGAATCATAACTAAATTTCAAAAAAAAAAAAAACAAACTTTTGGAATTTCTTTTTTTTTTTTGTTTCCAAATTTTGGTTTGATTTTTACAAATATAGGTAAGAATTAAGATGTAGATATCCATGTTGAAGCAAACACATGGTATGGTATGGTAGTTGTAAGCTTAAATTTCAAAAACAAAATGGTTATCAAACATGGCCTAAGTTATCTTGAATTCCCAACCATCATATCATAGGCCACCCACCTACGAGTTATCTTGACTACCAAATATAGTAAAATCAAGCAGTTTGTTCTGGAAAAATAGTCGAGATGCGTGTAAGTTGGTTTATATACGAACGGATAAAATAAAAATTCTTGAATTCACTCTTGTTTTCCCAAGTCTTGGCTACAAAAAGATCTGTGATCTCCATATCACTATTCCTACATTCTCATTCTTCTGAAGTTAGTGTTATCCCTTTGTCACTTGTTGATGCAGGAAGCAGAATTGATGGTTAACATTAAAGATCATGTTCTCATTCCCGAGCACCAGTTGCTATCAAACGAAGAGAAGAAGACGCTGTTGGAGAGATATACGGTGAAAGAAACACAGGTTAGTATCGTTGTCTTGGCGAAATTTACGAAATTGTGAGAATACATTTTTGAAAATATACCAAAATGTGTAGCTGTTAGTTGTAATGTGATTTTGTATTTTGTCTCAGCTGCCTCGAATACAAGTCAATGATCCAATTGCTAAATATTATGGAATGAAGCGTGGACAAGTTGTGAAGATTATCCGACCAAGCGAGACTGCTGGAAGATATGTTACATATAGGTATGTTGTTTGA

mRNA sequence

ATGGTGTTGCCAGAGGAGGAAATCAGCAGACTCTTTCGAATCCGAAAAACGGTGATGGAGATGCTGAGAGACCGATGCTACTTTGTTGGAGACTCCGAGATTGAAATGTCAAGACAACAATTTATGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTTGTTATCAATAAAGCCAAGAGAAATAACAGCTCTGACCAGATATATATATTTTTTCCTGAAGCTCCGAAGGTTGGTGTGAAGATAGTACAAACGTATCTTCAACGTATGAAATCAGATAATGTTTGTAGTGCGATATTGGTTGTTAAAGTGAATTTGACCCCATTTGCTCGCAATTATGTAAGCGTTATTCCTTCTACATTTCACTTGGAGGTTTTCCAGGAAGCAGAATTGATGGTTAACATTAAAGATCATGTTCTCATTCCCGAGCACCAGTTGCTATCAAACGAAGAGAAGAAGACGCTGTTGGAGAGATATACGGTGAAAGAAACACAGCTGCCTCGAATACAAGTCAATGATCCAATTGCTAAATATTATGGAATGAAGCGTGGACAAGTTGTGAAGATTATCCGACCAAGCGAGACTGCTGGAAGATATGTTACATATAGGTATGTTGTTTGA

Coding sequence (CDS)

ATGGTGTTGCCAGAGGAGGAAATCAGCAGACTCTTTCGAATCCGAAAAACGGTGATGGAGATGCTGAGAGACCGATGCTACTTTGTTGGAGACTCCGAGATTGAAATGTCAAGACAACAATTTATGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTTGTTATCAATAAAGCCAAGAGAAATAACAGCTCTGACCAGATATATATATTTTTTCCTGAAGCTCCGAAGGTTGGTGTGAAGATAGTACAAACGTATCTTCAACGTATGAAATCAGATAATGTTTGTAGTGCGATATTGGTTGTTAAAGTGAATTTGACCCCATTTGCTCGCAATTATGTAAGCGTTATTCCTTCTACATTTCACTTGGAGGTTTTCCAGGAAGCAGAATTGATGGTTAACATTAAAGATCATGTTCTCATTCCCGAGCACCAGTTGCTATCAAACGAAGAGAAGAAGACGCTGTTGGAGAGATATACGGTGAAAGAAACACAGCTGCCTCGAATACAAGTCAATGATCCAATTGCTAAATATTATGGAATGAAGCGTGGACAAGTTGTGAAGATTATCCGACCAAGCGAGACTGCTGGAAGATATGTTACATATAGGTATGTTGTTTGA

Protein sequence

MVLPEEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENMKREDLVINKAKRNNSSDQIYIFFPEAPKVGVKIVQTYLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPSTFHLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYYGMKRGQVVKIIRPSETAGRYVTYRYVV

Homology

[Close]

BLAST of Sed0023452 vs. NCBI nr
Match: XP_038895255.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_038895256.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_038895258.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_038895259.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida])

HSP 1 Score: 334.3 bits (856), Expect = 7.2e-88
Identity = 170/206 (82.52%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MVLPEEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENMKREDLVINKAK 60
           MVL EEEI++LFR+RKTV++ML+DR YFVGDSE+ MSR+QF  KFGE+MKREDLVINK+K
Sbjct: 1   MVLSEEEITKLFRVRKTVLQMLKDRGYFVGDSELAMSREQFKYKFGESMKREDLVINKSK 60

Query: 61  RNNSSDQIYIFFPEAPKVGVKIVQTYLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPST 120
           RNNSS+QIYIFFPE PKVG+K VQTY+ RMKS+NV  A+LVV+ NLTPFAR  V  I S 
Sbjct: 61  RNNSSEQIYIFFPEEPKVGIKTVQTYVNRMKSENVSRALLVVQQNLTPFARTKVGEISSQ 120

Query: 121 FHLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYYG 180
           FHLEVFQEAELMVNIKDHVLIPEHQLL+NEEKKTLLERYTVKETQLPRIQV DPIA+YYG
Sbjct: 121 FHLEVFQEAELMVNIKDHVLIPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180

Query: 181 MKRGQVVKIIRPSETAGRYVTYRYVV 207
           MKRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 MKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Sed0023452 vs. NCBI nr
Match: XP_022959553.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022959554.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022959555.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_023004795.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023004796.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023004797.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima] >XP_023513561.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo] >XP_023513563.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.0 bits (850), Expect = 3.6e-87
Identity = 166/206 (80.58%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MVLPEEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENMKREDLVINKAK 60
           MVL EEEI+RLFR+RKTV++ML+DR YFVGD E++MSR+QF NK+GE+MKRED+VINKAK
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 61  RNNSSDQIYIFFPEAPKVGVKIVQTYLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPST 120
           RN+SSDQIYIFFPE PKVGVK ++TY  RMKS+NV  AILVV+ NLTPFAR  +S I + 
Sbjct: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120

Query: 121 FHLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYYG 180
           FHLEVFQEAEL+VNIKDHVL+PEHQLLSNEEKKTLLERYTVKETQLPRIQV DP+A+YYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 MKRGQVVKIIRPSETAGRYVTYRYVV 207
           +KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Sed0023452 vs. NCBI nr
Match: XP_023541037.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.0 bits (850), Expect = 3.6e-87
Identity = 168/206 (81.55%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MVLPEEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENMKREDLVINKAK 60
           MVL EEEI+RLFR+RKT+M+ML+DR Y+VGD +IEMSR QF NK+G+NMKREDLVINKA 
Sbjct: 1   MVLSEEEITRLFRVRKTLMQMLKDRGYYVGDLDIEMSRNQFRNKYGDNMKREDLVINKAM 60

Query: 61  RNNSSDQIYIFFPEAPKVGVKIVQTYLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPST 120
           RNNSSDQIYIFFPE PKVGVK ++TY  RMKS+NV  AILVV+ NLTPFAR  +S I S 
Sbjct: 61  RNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYYG 180
           FHLEVFQEAELMVN+KDHVLIPEHQLL+NEEKKTLLERYTVKETQLPRIQV DPIA+YYG
Sbjct: 121 FHLEVFQEAELMVNVKDHVLIPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180

Query: 181 MKRGQVVKIIRPSETAGRYVTYRYVV 207
           +KRGQV+KIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVLKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Sed0023452 vs. NCBI nr
Match: XP_022955185.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_022994897.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima])

HSP 1 Score: 331.3 bits (848), Expect = 6.1e-87
Identity = 168/206 (81.55%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MVLPEEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENMKREDLVINKAK 60
           MVL EEEI+RLFRIRKT+M+ML+DR Y+VGD +I+MSR QF NK+G+NMKREDLVINKA 
Sbjct: 1   MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAM 60

Query: 61  RNNSSDQIYIFFPEAPKVGVKIVQTYLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPST 120
           RNNSSDQIYIFFPE PKVGVK ++TY  RMKS+NV  AILVV+ NLTPFAR  +S I S 
Sbjct: 61  RNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYYG 180
           FHLEVFQEAELMVN+KDHVLIPEHQLL+NEEKKTLLERYTVKETQLPRIQV DPIA+YYG
Sbjct: 121 FHLEVFQEAELMVNVKDHVLIPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180

Query: 181 MKRGQVVKIIRPSETAGRYVTYRYVV 207
           +KRGQV+KIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVLKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Sed0023452 vs. NCBI nr
Match: XP_022143609.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Momordica charantia])

HSP 1 Score: 328.9 bits (842), Expect = 3.0e-86
Identity = 165/206 (80.10%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MVLPEEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENMKREDLVINKAK 60
           MVL EEEI+RLFRIRKTV++ML+DR YFVGD EI+MSR+QF +K+GENMKRED+VINKA+
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60

Query: 61  RNNSSDQIYIFFPEAPKVGVKIVQTYLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPST 120
           RN+SSDQIY+FFPE  KVGVK ++TY  RMKS+NV  AILVV+ NLTPFAR  +S I S 
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYYG 180
           FHLEVFQEAEL+VNIKDHVL+PEHQLL+NEEKKTLLERYTVKETQLPRIQV DP+A+YYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 MKRGQVVKIIRPSETAGRYVTYRYVV 207
           +KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Sed0023452 vs. ExPASy Swiss-Prot
Match: O81098 (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 6.8e-81
Identity = 150/205 (73.17%), Postives = 180/205 (87.80%), Query Frame = 0


Query: 2   VLPEEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENMKREDLVINKAKR 61
           +L EEE+ RL+RI+KT+M+MLRDR YF+ DSE+ M++QQF+ K G+NMKREDLV  KAKR
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NNSSDQIYIFFPEAPKVGVKIVQTYLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPSTF 121
           N++SDQ+YIFFP+  KVGVK ++ Y  RMKS+NV  AILVV+ NLTPFAR  +S I S F
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 122 HLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYYGM 181
           HLEVFQEAE++VNIK+HVL+PEHQ+L+ EEKKTLLERYTVKETQLPRIQV DPIA+Y+G+
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 182 KRGQVVKIIRPSETAGRYVTYRYVV 207
           KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Sed0023452 vs. ExPASy Swiss-Prot
Match: Q80UW8 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.8e-50
Identity = 96/206 (46.60%), Postives = 146/206 (70.87%), Query Frame = 0


Query: 5   EEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGE-----NMKREDLVINKA 64
           EEE  RL++IRKT+M++  DR Y V   E++ + ++F  +FG+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNNSSDQIYIFFPEAPKVGVKIVQTYLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPS 124
             ++ +DQ+++FFPE PKVG+K ++ Y QRM+ +N+  A++VV+  +TP A+  +  +  
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 TFHLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYY 184
            + LE F + EL++NI +H L+PEH +++ EE   LL RY ++E+QLPRIQ  DP+A+Y+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183

Query: 185 GMKRGQVVKIIRPSETAGRYVTYRYV 206
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Sed0023452 vs. ExPASy Swiss-Prot
Match: B0BNE2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.8e-50
Identity = 96/206 (46.60%), Postives = 146/206 (70.87%), Query Frame = 0


Query: 5   EEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGE-----NMKREDLVINKA 64
           EEE  RL++IRKT+M++  DR Y V   E++ + ++F  +FG+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNNSSDQIYIFFPEAPKVGVKIVQTYLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPS 124
             ++ +DQ+++FFPE PKVG+K ++ Y QRM+ +N+  A++VV+  +TP A+  +  +  
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 TFHLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYY 184
            + LE F + EL++NI +H L+PEH +++ EE   LL RY ++E+QLPRIQ  DP+A+Y+
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYF 183

Query: 185 GMKRGQVVKIIRPSETAGRYVTYRYV 206
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Sed0023452 vs. ExPASy Swiss-Prot
Match: Q5R587 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=9601 GN=POLR2E PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 6.2e-50
Identity = 96/206 (46.60%), Postives = 145/206 (70.39%), Query Frame = 0


Query: 5   EEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGE-----NMKREDLVINKA 64
           EEE  RL++IRKT+M++  DR Y V   E++ + ++F  +FG+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63

Query: 65  KRNNSSDQIYIFFPEAPKVGVKIVQTYLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPS 124
             ++ +DQ+++FFPE PKVG+K ++ Y QRM+ +N+  A++VV+  +TP A+  +  +  
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 125 TFHLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYY 184
            + LE F + EL++NI +H L+PEH +++ EE   LL RY ++E QLPRIQ  DP+A+Y+
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYF 183

Query: 185 GMKRGQVVKIIRPSETAGRYVTYRYV 206
           G+KRGQVVKIIRPSETAGRY+TYR V
Sbjct: 184 GIKRGQVVKIIRPSETAGRYITYRLV 209

[Close]

BLAST of Sed0023452 vs. ExPASy Swiss-Prot
Match: A8XGH1 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae OX=6238 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.0e-49
Identity = 100/207 (48.31%), Postives = 142/207 (68.60%), Query Frame = 0


Query: 5   EEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENMK-----REDLVINKA 64
           E E  RL+RIRKTV++M+ DR Y V   E++   + F   FG+        R DL I  A
Sbjct: 5   ELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTILVA 64

Query: 65  KRNNSSDQIYIFFPEAPKVGVKIVQTYLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPS 124
             ++ +DQ+++FFPE  K+G+K ++   Q+M+  N+  AI+VV+  +TP A+  +  +  
Sbjct: 65  HNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIGDMAP 124

Query: 125 TFHLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYY 184
            + LE F EAELMVNI +H L+PEH +++ EEK  LL RY +K++QLPRIQ  DP+A+Y+
Sbjct: 125 KYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYF 184

Query: 185 GMKRGQVVKIIRPSETAGRYVTYRYVV 207
           G++RGQVVKIIRPSETAGRY+TYR VV
Sbjct: 185 GLRRGQVVKIIRPSETAGRYITYRLVV 211

[Close]

BLAST of Sed0023452 vs. ExPASy TrEMBL
Match: A0A6J1KT45 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111497988 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.7e-87
Identity = 166/206 (80.58%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MVLPEEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENMKREDLVINKAK 60
           MVL EEEI+RLFR+RKTV++ML+DR YFVGD E++MSR+QF NK+GE+MKRED+VINKAK
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 61  RNNSSDQIYIFFPEAPKVGVKIVQTYLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPST 120
           RN+SSDQIYIFFPE PKVGVK ++TY  RMKS+NV  AILVV+ NLTPFAR  +S I + 
Sbjct: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120

Query: 121 FHLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYYG 180
           FHLEVFQEAEL+VNIKDHVL+PEHQLLSNEEKKTLLERYTVKETQLPRIQV DP+A+YYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 MKRGQVVKIIRPSETAGRYVTYRYVV 207
           +KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Sed0023452 vs. ExPASy TrEMBL
Match: A0A6J1H699 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111460591 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.7e-87
Identity = 166/206 (80.58%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MVLPEEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENMKREDLVINKAK 60
           MVL EEEI+RLFR+RKTV++ML+DR YFVGD E++MSR+QF NK+GE+MKRED+VINKAK
Sbjct: 1   MVLAEEEITRLFRVRKTVLQMLKDRGYFVGDFEVDMSREQFKNKYGESMKREDIVINKAK 60

Query: 61  RNNSSDQIYIFFPEAPKVGVKIVQTYLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPST 120
           RN+SSDQIYIFFPE PKVGVK ++TY  RMKS+NV  AILVV+ NLTPFAR  +S I + 
Sbjct: 61  RNDSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISTK 120

Query: 121 FHLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYYG 180
           FHLEVFQEAEL+VNIKDHVL+PEHQLLSNEEKKTLLERYTVKETQLPRIQV DP+A+YYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLSNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 MKRGQVVKIIRPSETAGRYVTYRYVV 207
           +KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Sed0023452 vs. ExPASy TrEMBL
Match: A0A6J1JX71 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111490485 PE=3 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 3.0e-87
Identity = 168/206 (81.55%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MVLPEEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENMKREDLVINKAK 60
           MVL EEEI+RLFRIRKT+M+ML+DR Y+VGD +I+MSR QF NK+G+NMKREDLVINKA 
Sbjct: 1   MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAM 60

Query: 61  RNNSSDQIYIFFPEAPKVGVKIVQTYLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPST 120
           RNNSSDQIYIFFPE PKVGVK ++TY  RMKS+NV  AILVV+ NLTPFAR  +S I S 
Sbjct: 61  RNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYYG 180
           FHLEVFQEAELMVN+KDHVLIPEHQLL+NEEKKTLLERYTVKETQLPRIQV DPIA+YYG
Sbjct: 121 FHLEVFQEAELMVNVKDHVLIPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180

Query: 181 MKRGQVVKIIRPSETAGRYVTYRYVV 207
           +KRGQV+KIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVLKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Sed0023452 vs. ExPASy TrEMBL
Match: A0A6J1GUG5 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111457227 PE=3 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 3.0e-87
Identity = 168/206 (81.55%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MVLPEEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENMKREDLVINKAK 60
           MVL EEEI+RLFRIRKT+M+ML+DR Y+VGD +I+MSR QF NK+G+NMKREDLVINKA 
Sbjct: 1   MVLSEEEITRLFRIRKTLMQMLKDRGYYVGDLDIDMSRNQFRNKYGDNMKREDLVINKAM 60

Query: 61  RNNSSDQIYIFFPEAPKVGVKIVQTYLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPST 120
           RNNSSDQIYIFFPE PKVGVK ++TY  RMKS+NV  AILVV+ NLTPFAR  +S I S 
Sbjct: 61  RNNSSDQIYIFFPEEPKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYYG 180
           FHLEVFQEAELMVN+KDHVLIPEHQLL+NEEKKTLLERYTVKETQLPRIQV DPIA+YYG
Sbjct: 121 FHLEVFQEAELMVNVKDHVLIPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPIARYYG 180

Query: 181 MKRGQVVKIIRPSETAGRYVTYRYVV 207
           +KRGQV+KIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVLKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Sed0023452 vs. ExPASy TrEMBL
Match: A0A6J1CPU1 (DNA-directed RNA polymerases II and IV subunit 5A-like OS=Momordica charantia OX=3673 GN=LOC111013465 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.5e-86
Identity = 165/206 (80.10%), Postives = 188/206 (91.26%), Query Frame = 0


Query: 1   MVLPEEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENMKREDLVINKAK 60
           MVL EEEI+RLFRIRKTV++ML+DR YFVGD EI+MSR+QF +K+GENMKRED+VINKA+
Sbjct: 1   MVLSEEEITRLFRIRKTVLQMLKDRSYFVGDFEIDMSREQFKHKYGENMKREDIVINKAR 60

Query: 61  RNNSSDQIYIFFPEAPKVGVKIVQTYLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPST 120
           RN+SSDQIY+FFPE  KVGVK ++TY  RMKS+NV  AILVV+ NLTPFAR  +S I S 
Sbjct: 61  RNDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCISEISSK 120

Query: 121 FHLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYYG 180
           FHLEVFQEAEL+VNIKDHVL+PEHQLL+NEEKKTLLERYTVKETQLPRIQV DP+A+YYG
Sbjct: 121 FHLEVFQEAELLVNIKDHVLVPEHQLLTNEEKKTLLERYTVKETQLPRIQVTDPVARYYG 180

Query: 181 MKRGQVVKIIRPSETAGRYVTYRYVV 207
           +KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 LKRGQVVKIIRPSETAGRYVTYRYVV 206

[Close]

BLAST of Sed0023452 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 301.6 bits (771), Expect = 4.8e-82
Identity = 150/205 (73.17%), Postives = 180/205 (87.80%), Query Frame = 0


Query: 2   VLPEEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENMKREDLVINKAKR 61
           +L EEE+ RL+RI+KT+M+MLRDR YF+ DSE+ M++QQF+ K G+NMKREDLV  KAKR
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 62  NNSSDQIYIFFPEAPKVGVKIVQTYLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPSTF 121
           N++SDQ+YIFFP+  KVGVK ++ Y  RMKS+NV  AILVV+ NLTPFAR  +S I S F
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 122 HLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYYGM 181
           HLEVFQEAE++VNIK+HVL+PEHQ+L+ EEKKTLLERYTVKETQLPRIQV DPIA+Y+G+
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGL 180

Query: 182 KRGQVVKIIRPSETAGRYVTYRYVV 207
           KRGQVVKIIRPSETAGRYVTYRYVV
Sbjct: 181 KRGQVVKIIRPSETAGRYVTYRYVV 205

[Close]

BLAST of Sed0023452 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C )

HSP 1 Score: 177.2 bits (448), Expect = 1.4e-44
Identity = 91/206 (44.17%), Postives = 144/206 (69.90%), Query Frame = 0


Query: 5   EEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENM---KREDLVINKAKR 64
           ++EI+R+F++R+TV++MLRDR Y + +S++ + R++F+ +F + M    +E L ++  K 
Sbjct: 5   DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64

Query: 65  NNSSDQIYIFFPEAPKVGVKIVQTYLQ-RMKSDNVCSAILVVKVNLTPFARNYVSVIPST 124
            N +D+IY+F+PE PKVGV +++  +  +M+ D V   I+VV + +T  AR  VS +   
Sbjct: 65  PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKM 124

Query: 125 FHLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYYG 184
             +EVF+EAEL+ NI +H L+ ++ +L ++ KK LL  YTV++TQLPRI V DP+A+YYG
Sbjct: 125 LTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYYG 184

Query: 185 MKRGQVVKIIRPSETAGRYVTYRYVV 207
           +KRGQVVKI R   T+  Y TYR+ V
Sbjct: 185 LKRGQVVKIRRSDATSLDYYTYRFAV 210

[Close]

BLAST of Sed0023452 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D )

HSP 1 Score: 128.6 bits (322), Expect = 5.6e-30
Identity = 75/200 (37.50%), Postives = 125/200 (62.50%), Query Frame = 0


Query: 7   EISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENMKREDLVINKAKRNNSSD 66
           E  + +  R+T MEMLRDR Y V D +I +S QQF   +GE+   + L I+   R +SS 
Sbjct: 20  ECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFDSSK 79

Query: 67  QIYIFFPEAPKVGVKIVQTYLQRMKS-DNVCSAILVVKVNLTPFARNYVSVIPSTFHLEV 126
           +I + F     V V  ++     + S +N+   ILV++ ++T  A   V +   +F +E+
Sbjct: 80  KISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELF--SFKVEL 139

Query: 127 FQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYYGMKRGQ 186
           F+  +L+VN+  HVL P+HQ+L+++EK++LL++++++E QLPR+   DPI +YYG++ GQ
Sbjct: 140 FEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQ 199

Query: 187 VVKIIRPSETAGRYVTYRYV 206
           V+K+    E +  +VTYR V
Sbjct: 200 VMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of Sed0023452 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 121.3 bits (303), Expect = 9.0e-28
Identity = 72/204 (35.29%), Postives = 121/204 (59.31%), Query Frame = 0


Query: 3   LPEEEISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENMKREDLVINKAKRN 62
           L  EE  R +  R+  ++MLRDR Y V D +I +S   F   +GE    + L I+   R+
Sbjct: 20  LSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRS 79

Query: 63  NSSDQIYIFFPEAPKVGVKIVQTYLQRMKS-DNVCSAILVVKVNLTPFARNYVSVIPSTF 122
           +S+ ++ I F     V V  +++ +  + S + +   ILV++ ++T  A   + +   +F
Sbjct: 80  DSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELF--SF 139

Query: 123 HLEVFQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYYGM 182
            +E+FQ  +L+VNI  H L P+HQ+L++EEK TLL++++++E QLPRI   D I +YYG+
Sbjct: 140 KVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGL 199

Query: 183 KRGQVVKIIRPSETAGRYVTYRYV 206
           ++GQVVK+    E    +V +R V
Sbjct: 200 EKGQVVKVNYRGELTESHVAFRCV 221

[Close]

BLAST of Sed0023452 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E )

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-25
Identity = 68/201 (33.83%), Postives = 115/201 (57.21%), Query Frame = 0


Query: 7   EISRLFRIRKTVMEMLRDRCYFVGDSEIEMSRQQFMNKFGENMKREDLVINKAKRNNSSD 66
           E  R +  R T  EMLRDR Y V ++E+ ++  +F + FGE  + E L I    R++   
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94

Query: 67  QIYIFFPEAPKVGVKIVQT-YLQRMKSDNVCSAILVVKVNLTPFARNYVSVIPSTFHLEV 126
           +I + F     + VK V+  ++Q   +  + + ILV++  +  FA+  ++  P  F +E 
Sbjct: 95  KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALTTFP--FTVET 154

Query: 127 FQEAELMVNIKDHVLIPEHQLLSNEEKKTLLERYTVKETQLPRIQVNDPIAKYYGMKRGQ 186
           F   +L+VNI  H+  P+ ++L+ EEK+ LL ++ +++ QLP +Q  D   +YYG+K+ Q
Sbjct: 155 FPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQ 214

Query: 187 VVKIIRPSETAGRYVTYRYVV 207
           VVKI    E  G +VTYR ++
Sbjct: 215 VVKITYSKEPVGDFVTYRCII 233

The following BLAST results are available for this feature:

BLAST of Sed0023452 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895255.1	7.2e-88	82.52	DNA-directed RNA polymerases II and IV subunit 5A-like [Benincasa hispida] >XP_0...	[more]
XP_022959553.1	3.6e-87	80.58	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_...	[more]
XP_023541037.1	3.6e-87	81.55	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita pepo subsp. pe...	[more]
XP_022955185.1	6.1e-87	81.55	DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita moschata] >XP_...	[more]
XP_022143609.1	3.0e-86	80.10	DNA-directed RNA polymerases II and IV subunit 5A-like [Momordica charantia]	[more]

BLAST of Sed0023452 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81098	6.8e-81	73.17	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=370...	[more]
Q80UW8	4.8e-50	46.60	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10...	[more]
B0BNE2	4.8e-50	46.60	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus ...	[more]
Q5R587	6.2e-50	46.60	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=96...	[more]
A8XGH1	4.0e-49	48.31	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis bri...	[more]

BLAST of Sed0023452 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KT45	1.7e-87	80.58	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1H699	1.7e-87	80.58	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=...	[more]
A0A6J1JX71	3.0e-87	81.55	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1GUG5	3.0e-87	81.55	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Cucurbita moschata OX=...	[more]
A0A6J1CPU1	1.5e-86	80.10	DNA-directed RNA polymerases II and IV subunit 5A-like OS=Momordica charantia OX...	[more]

BLAST of Sed0023452 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22320.1	4.8e-82	73.17	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	1.4e-44	44.17	RNA polymerase II fifth largest subunit, C	[more]
AT2G41340.1	5.6e-30	37.50	RNA polymerase II fifth largest subunit, D	[more]
AT3G57080.1	9.0e-28	35.29	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT3G54490.1	1.1e-25	33.83	RNA polymerase II fifth largest subunit, E	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014381	DNA-directed RNA polymerase RPB5 subunit, eukaryote/virus	PIRSF	PIRSF000747	RPB5	coord: 1..206 e-value: 1.3E-83 score: 277.5
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 133..205 e-value: 7.1E-34 score: 115.5
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 5..90 e-value: 1.7E-29 score: 102.2
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	3.40.1340.10		coord: 4..130 e-value: 7.7E-42 score: 144.6
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 5..134
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 131..206 e-value: 3.5E-34 score: 118.3
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 131..206
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 1..206
None	No IPR available	PANTHER	PTHR10535:SF17	DNA-DIRECTED RNA POLYMERASES II AND IV SUBUNIT 5A-LIKE	coord: 1..206
IPR020609	Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunit	HAMAP	MF_00025	RNApol_RpoH_RPB5	coord: 133..206 score: 22.502354

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0023452.1	Sed0023452.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity