Sed0022368 (gene) Chayote v1

Overview


Name	Sed0022368
Type	gene
Organism	Sechium edule (Chayote v1)
Description	classical arabinogalactan protein 26
Location	LG09: 36165327 .. 36165901 (+)
RNA-Seq Expression	Sed0022368
Synteny	Sed0022368

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGGGGGGGATTTGTTTCTCTCTCATCATTGACAATGGCTTCCACTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCCATTTTGGGTTTCTCTTTTGCTTCTTACCCCAATTTCTCTCCTCATCAAATTTCTTCCATCGCCGCCGCGCCGGAGTTTTCGCCCGAGCCTTCTCCGGCGCCGAAGCCGGACATTTTCCCCGTCTTTCCGACTCCCGGCGGCGCCGACCTCCCGCCGTCATCCCTTCCGACCATTCCCTCCAGCCCCAGCCCTCCCAACCCCGATTTCACAGCCTTTGCGGCGGCGCCGGAGATAACTCCTCCGCCGTCTCCGTCCTTGCCGTTCTCGGCTGCTGCTGCTCTCAACTGCGGTGGGGTTTTTTGGCTCGTTTTGGTGGCGCTCACGGCGGCGTTCGTGGCGGAGCTCTGCCGGTGACCAGTTTTCCGGCGGTGGTTTTAGTGGCCAGTGGAGTTGTGTTTGGCGCTGGTGATTGTTCTTTTACTTGTGACCTTTTTGTCAAAAATATATAATTTTAGTTTTTTATTTTTTATTTTCATTTTAGTTGAG

mRNA sequence

GGGGGGGGGGATTTGTTTCTCTCTCATCATTGACAATGGCTTCCACTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCCATTTTGGGTTTCTCTTTTGCTTCTTACCCCAATTTCTCTCCTCATCAAATTTCTTCCATCGCCGCCGCGCCGGAGTTTTCGCCCGAGCCTTCTCCGGCGCCGAAGCCGGACATTTTCCCCGTCTTTCCGACTCCCGGCGGCGCCGACCTCCCGCCGTCATCCCTTCCGACCATTCCCTCCAGCCCCAGCCCTCCCAACCCCGATTTCACAGCCTTTGCGGCGGCGCCGGAGATAACTCCTCCGCCGTCTCCGTCCTTGCCGTTCTCGGCTGCTGCTGCTCTCAACTGCGGTGGGGTTTTTTGGCTCGTTTTGGTGGCGCTCACGGCGGCGTTCGTGGCGGAGCTCTGCCGGTGACCAGTTTTCCGGCGGTGGTTTTAGTGGCCAGTGGAGTTGTGTTTGGCGCTGGTGATTGTTCTTTTACTTGTGACCTTTTTGTCAAAAATATATAATTTTAGTTTTTTATTTTTTATTTTCATTTTAGTTGAG

Coding sequence (CDS)

ATGGCTTCCACTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCCATTTTGGGTTTCTCTTTTGCTTCTTACCCCAATTTCTCTCCTCATCAAATTTCTTCCATCGCCGCCGCGCCGGAGTTTTCGCCCGAGCCTTCTCCGGCGCCGAAGCCGGACATTTTCCCCGTCTTTCCGACTCCCGGCGGCGCCGACCTCCCGCCGTCATCCCTTCCGACCATTCCCTCCAGCCCCAGCCCTCCCAACCCCGATTTCACAGCCTTTGCGGCGGCGCCGGAGATAACTCCTCCGCCGTCTCCGTCCTTGCCGTTCTCGGCTGCTGCTGCTCTCAACTGCGGTGGGGTTTTTTGGCTCGTTTTGGTGGCGCTCACGGCGGCGTTCGTGGCGGAGCTCTGCCGGTGA

Protein sequence

MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPPSPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR

Homology

[Close]

BLAST of Sed0022368 vs. NCBI nr
Match: KAG6575865.1 (hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.4 bits (459), Expect = 5.1e-42
Identity = 104/135 (77.04%), Postives = 110/135 (81.48%), Query Frame = 0


Query: 1   MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVF 60
           MAS FSLYIPIFMAYTASIL FSFASYPN  P  ISSI+AAPEFSP PSP+P  DI P+F
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60

Query: 61  PTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPPSPSLPFSAAAALNCGGVFWL 120
           PTPGGA LPPSSLPTIPSSPSPPNPDF   A APE+  PPS SLPFSAAA LN GG  W 
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 VLVALTAAFVAELCR 136
           + VALTAA VAE+CR
Sbjct: 121 IWVALTAAIVAEVCR 135

[Close]

BLAST of Sed0022368 vs. NCBI nr
Match: XP_022953817.1 (classical arabinogalactan protein 26 [Cucurbita moschata])

HSP 1 Score: 181.4 bits (459), Expect = 5.1e-42
Identity = 104/135 (77.04%), Postives = 110/135 (81.48%), Query Frame = 0


Query: 1   MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVF 60
           MAS FSLYIPIFMAYTASIL FSFASYPN  P  ISSI+AAPEFSP PSP+P  DI P+F
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLF 60

Query: 61  PTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPPSPSLPFSAAAALNCGGVFWL 120
           PTPGGA LPPSSLPTIPSSPSPPNPDF   A APE+  PPS SLPFSAAA LN GG  W 
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 VLVALTAAFVAELCR 136
           + VALTAA VAE+CR
Sbjct: 121 IWVALTAAIVAEVCR 135

[Close]

BLAST of Sed0022368 vs. NCBI nr
Match: XP_023548939.1 (classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.3 bits (451), Expect = 4.3e-41
Identity = 102/135 (75.56%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVF 60
           MAS FSLYIPIFMAYTASI  FSFASYPN  P  ISSI+AAPEFSP PSP+P  DI P+F
Sbjct: 1   MASIFSLYIPIFMAYTASIFPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60

Query: 61  PTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPPSPSLPFSAAAALNCGGVFWL 120
           PTPGGA LPPSSLPTIPSSPSPPNPDF   A APE+  PPS SLPFSA A LN GG  W 
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSATATLNSGGWCWS 120

Query: 121 VLVALTAAFVAELCR 136
           + VALTAA VAE+CR
Sbjct: 121 IWVALTAAIVAEVCR 135

[Close]

BLAST of Sed0022368 vs. NCBI nr
Match: XP_022991733.1 (classical arabinogalactan protein 26 [Cucurbita maxima])

HSP 1 Score: 177.2 bits (448), Expect = 9.7e-41
Identity = 101/135 (74.81%), Postives = 107/135 (79.26%), Query Frame = 0


Query: 1   MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVF 60
           MAS FSLYIPIFMAYTASI  FSFASYPN  P  ISSI+AAPEFSP PSP+P  DI P+F
Sbjct: 1   MASIFSLYIPIFMAYTASIFAFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60

Query: 61  PTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPPSPSLPFSAAAALNCGGVFWL 120
           PTPGGA LPPSSLPTIPSSPSPPNPDF     APE+  PPS SLPFSAAA LN GG  W 
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDATPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 VLVALTAAFVAELCR 136
           + VALTAA V E+CR
Sbjct: 121 IWVALTAAIVEEVCR 135

[Close]

BLAST of Sed0022368 vs. NCBI nr
Match: XP_038876736.1 (classical arabinogalactan protein 26-like [Benincasa hispida])

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-40
Identity = 103/137 (75.18%), Postives = 110/137 (80.29%), Query Frame = 0


Query: 1   MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKP--DIFP 60
           MAS FSLYIPIFMAYTASIL FS ASYPN+SP  ISSI+AAPEFSP PSP+P P  DI P
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSLASYPNYSPTLISSISAAPEFSPFPSPSPSPASDISP 60

Query: 61  VFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPPSPSLPFSAAAALNCGGVF 120
           +FPTPGGA LPPSSLPTIPSSPSPPNPDF   A APE++ PPS SLPFSAA +LN  G  
Sbjct: 61  LFPTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMSLPPSQSLPFSAAVSLNFDGWC 120

Query: 121 WLVLVALTAAFVAELCR 136
           W VLVALT A   ELCR
Sbjct: 121 WPVLVALTTALAVELCR 137

[Close]

BLAST of Sed0022368 vs. ExPASy Swiss-Prot
Match: Q94F57 (Classical arabinogalactan protein 26 OS=Arabidopsis thaliana OX=3702 GN=AGP26 PE=2 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06
Identity = 50/129 (38.76%), Postives = 70/129 (54.26%), Query Frame = 0


Query: 9   IPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPE-------PSPAPKPDIFPVFP 68
           + +F A+T      S   + + S  Q+S+I+AAP F PE        +PA  PD  P+FP
Sbjct: 3   VSLFTAFTV----LSLCLHTSTSEFQLSTISAAPSFLPEAPSSFSASTPAMSPDTSPLFP 62

Query: 69  TPGGADLPPSS-----LPTIPSSPSPPNPDFTAFAAAPEITPPPSPSLPFSAAAALNCGG 126
           TPG +++ PS      +PTIPSS SPPNPD        E++P  SP LP S++  L    
Sbjct: 63  TPGSSEMSPSPSESSIMPTIPSSLSPPNPDAVTPDPLLEVSPVGSP-LPASSSVCLVSSQ 122

[Close]

BLAST of Sed0022368 vs. ExPASy TrEMBL
Match: A0A6J1GPB2 (classical arabinogalactan protein 26 OS=Cucurbita moschata OX=3662 GN=LOC111456234 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.5e-42
Identity = 104/135 (77.04%), Postives = 110/135 (81.48%), Query Frame = 0


Query: 1   MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVF 60
           MAS FSLYIPIFMAYTASIL FSFASYPN  P  ISSI+AAPEFSP PSP+P  DI P+F
Sbjct: 1   MASIFSLYIPIFMAYTASILPFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDIAPLF 60

Query: 61  PTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPPSPSLPFSAAAALNCGGVFWL 120
           PTPGGA LPPSSLPTIPSSPSPPNPDF   A APE+  PPS SLPFSAAA LN GG  W 
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 VLVALTAAFVAELCR 136
           + VALTAA VAE+CR
Sbjct: 121 IWVALTAAIVAEVCR 135

[Close]

BLAST of Sed0022368 vs. ExPASy TrEMBL
Match: A0A6J1JX46 (classical arabinogalactan protein 26 OS=Cucurbita maxima OX=3661 GN=LOC111488263 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.7e-41
Identity = 101/135 (74.81%), Postives = 107/135 (79.26%), Query Frame = 0


Query: 1   MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVF 60
           MAS FSLYIPIFMAYTASI  FSFASYPN  P  ISSI+AAPEFSP PSP+P  DI P+F
Sbjct: 1   MASIFSLYIPIFMAYTASIFAFSFASYPNHFPPLISSISAAPEFSPSPSPSPASDISPLF 60

Query: 61  PTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPPSPSLPFSAAAALNCGGVFWL 120
           PTPGGA LPPSSLPTIPSSPSPPNPDF     APE+  PPS SLPFSAAA LN GG  W 
Sbjct: 61  PTPGGATLPPSSLPTIPSSPSPPNPDFMDATPAPEMPLPPSQSLPFSAAATLNSGGWCWS 120

Query: 121 VLVALTAAFVAELCR 136
           + VALTAA V E+CR
Sbjct: 121 IWVALTAAIVEEVCR 135

[Close]

BLAST of Sed0022368 vs. ExPASy TrEMBL
Match: A0A0A0K510 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390090 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 8.6e-35
Identity = 99/136 (72.79%), Postives = 103/136 (75.74%), Query Frame = 0


Query: 1   MASTFSLYIPIFMAYTASILGFSFASYPN-FSPHQISSIAAAPEFSPEPSPAPKPDIFPV 60
           MAS FSLYIPIFMAYTAS+  FSFASYPN F  H ISSI+AAPEFS  PSPAP  DI P+
Sbjct: 1   MASIFSLYIPIFMAYTASVFPFSFASYPNDFPTHLISSISAAPEFS--PSPAPASDISPL 60

Query: 61  FPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPPSPSLPFSAAAALNCGGVFW 120
           FPTPG A LPPSSLPTIPSSPSPPNPDF   A APE+   PS SLPFS AAALN GG   
Sbjct: 61  FPTPGDATLPPSSLPTIPSSPSPPNPDFMDAAPAPEMPLSPSQSLPFSTAAALNSGGWCC 120

Query: 121 LVLVALTAAFVAELCR 136
            V VALT   VAEL R
Sbjct: 121 SVFVALTTTLVAELRR 134

[Close]

BLAST of Sed0022368 vs. ExPASy TrEMBL
Match: A0A5A7UQZ3 (Classical arabinogalactan protein 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002010 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.9e-30
Identity = 91/139 (65.47%), Postives = 100/139 (71.94%), Query Frame = 0


Query: 1   MASTFSLYIPIFMAYTASILGFSFASYPNFSPH----QISSIAAAPEFSPEPSPAPKPDI 60
           MAS FSLYIPIFMAYTAS   F+FASYPN+ P       SSI+AAPEFS  P+PAP  DI
Sbjct: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFS--PAPAPSSDI 60

Query: 61  FPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPPSPSLPFSAAAALNCGG 120
            P+FPTPG A LPPSSLPTIPSSPSPPNPDF   A APE+   P+ S+PFSAAAALN  G
Sbjct: 61  SPLFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVG 120

Query: 121 VFWLVLVALTAAFVAELCR 136
               V +AL  A  AEL R
Sbjct: 121 WCCSVFLALMTALAAELHR 137

[Close]

BLAST of Sed0022368 vs. ExPASy TrEMBL
Match: A0A1S3BRG9 (classical arabinogalactan protein 26 OS=Cucumis melo OX=3656 GN=LOC103492730 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.9e-30
Identity = 91/139 (65.47%), Postives = 100/139 (71.94%), Query Frame = 0


Query: 1   MASTFSLYIPIFMAYTASILGFSFASYPNFSPH----QISSIAAAPEFSPEPSPAPKPDI 60
           MAS FSLYIPIFMAYTAS   F+FASYPN+ P       SSI+AAPEFS  P+PAP  DI
Sbjct: 1   MASIFSLYIPIFMAYTASFFPFAFASYPNYFPTHRYLMTSSISAAPEFS--PAPAPSSDI 60

Query: 61  FPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPPSPSLPFSAAAALNCGG 120
            P+FPTPG A LPPSSLPTIPSSPSPPNPDF   A APE+   P+ S+PFSAAAALN  G
Sbjct: 61  SPLFPTPGDATLPPSSLPTIPSSPSPPNPDFMDVAPAPEMPLSPTWSMPFSAAAALNSVG 120

Query: 121 VFWLVLVALTAAFVAELCR 136
               V +AL  A  AEL R
Sbjct: 121 WCCSVFLALMTALAAELHR 137

[Close]

BLAST of Sed0022368 vs. TAIR 10
Match: AT2G47930.1 (arabinogalactan protein 26 )

HSP 1 Score: 54.3 bits (129), Expect = 8.8e-08
Identity = 50/129 (38.76%), Postives = 70/129 (54.26%), Query Frame = 0


Query: 9   IPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPE-------PSPAPKPDIFPVFP 68
           + +F A+T      S   + + S  Q+S+I+AAP F PE        +PA  PD  P+FP
Sbjct: 3   VSLFTAFTV----LSLCLHTSTSEFQLSTISAAPSFLPEAPSSFSASTPAMSPDTSPLFP 62

Query: 69  TPGGADLPPSS-----LPTIPSSPSPPNPDFTAFAAAPEITPPPSPSLPFSAAAALNCGG 126
           TPG +++ PS      +PTIPSS SPPNPD        E++P  SP LP S++  L    
Sbjct: 63  TPGSSEMSPSPSESSIMPTIPSSLSPPNPDAVTPDPLLEVSPVGSP-LPASSSVCLVSSQ 122

The following BLAST results are available for this feature:

BLAST of Sed0022368 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575865.1	5.1e-42	77.04	hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022953817.1	5.1e-42	77.04	classical arabinogalactan protein 26 [Cucurbita moschata]	[more]
XP_023548939.1	4.3e-41	75.56	classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo]	[more]
XP_022991733.1	9.7e-41	74.81	classical arabinogalactan protein 26 [Cucurbita maxima]	[more]
XP_038876736.1	2.8e-40	75.18	classical arabinogalactan protein 26-like [Benincasa hispida]	[more]

BLAST of Sed0022368 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94F57	1.2e-06	38.76	Classical arabinogalactan protein 26 OS=Arabidopsis thaliana OX=3702 GN=AGP26 PE...	[more]

BLAST of Sed0022368 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPB2	2.5e-42	77.04	classical arabinogalactan protein 26 OS=Cucurbita moschata OX=3662 GN=LOC1114562...	[more]
A0A6J1JX46	4.7e-41	74.81	classical arabinogalactan protein 26 OS=Cucurbita maxima OX=3661 GN=LOC111488263...	[more]
A0A0A0K510	8.6e-35	72.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390090 PE=4 SV=1	[more]
A0A5A7UQZ3	4.9e-30	65.47	Classical arabinogalactan protein 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BRG9	4.9e-30	65.47	classical arabinogalactan protein 26 OS=Cucumis melo OX=3656 GN=LOC103492730 PE=...	[more]

BLAST of Sed0022368 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47930.1	8.8e-08	38.76	arabinogalactan protein 26	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..92
None	No IPR available	PANTHER	PTHR35725:SF4	CLASSICAL ARABINOGALACTAN PROTEIN 26	coord: 1..116
IPR039346	Classical arabinogalactan protein 25/26	PANTHER	PTHR35725	CLASSICAL ARABINOGALACTAN PROTEIN 26	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022368.1	Sed0022368.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane