Sed0022195 (gene) Chayote v1

Overview


Name	Sed0022195
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Flagellar hook-associated protein like
Location	LG01: 7936298 .. 7937006 (+)
RNA-Seq Expression	Sed0022195
Synteny	Sed0022195

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAATAAAAGAAGGAAAAAGAGAGCAATGAGTTGTTAACAATCAAAACAAAATATTATTATAAAGGAGCACTAAGCTCTCAATTGTTATTTCATATCTCTTTAATCCCAAATTCCCCCATTTTCATTTTCCATAGCAAAAAGCCCATCACCGGCGCCGGAATCTCTCCGCCGACGATATGGCCTCCGTTTGCATATCAGAATGCGTCGACAAGGCCTGCATCATTCCCGCCACCCGGCCGACGACATACGTGAGCCTACAGCGGTGTGATCAGGAGGAGGACGGCTGTGCAGAGCGCCGCCGCCCACGGCCGAGAGCGGCGGAGGGAATTTCCCGCCGGCAAATGTATCTGAGGAGCTATACTTTTTCAAGAGAGGACGCTGTGGACGCCTCTAAGAGTACTACTCAAAGCTGCCTTGGAAAGCTCAGGCCGCCGAAGATAGTCCGGAGGAGGAGCCGCTGTTTCGCCGTCGTGAGGGCCGTCGCCAAGCAGGCTTCTTCCGGCGGCGACTTGCTGTCAATGTTTCGACGGTGGCTTTGTTGTGTTGCTCAAGTTGATAGTCGCCGCCCCAAGCATTGGTGATCATGACTAAATCCTAATTATATGTTTGGTTGTATCAAAAACTTGGAAAATTAATAAATATCAATAATTGTTTCCTTTTATATGGAGTTTGAAGTTTAGACAAAAATTGATATTGCTTTGAACAAT

mRNA sequence

AATAATAAAAGAAGGAAAAAGAGAGCAATGAGTTGTTAACAATCAAAACAAAATATTATTATAAAGGAGCACTAAGCTCTCAATTGTTATTTCATATCTCTTTAATCCCAAATTCCCCCATTTTCATTTTCCATAGCAAAAAGCCCATCACCGGCGCCGGAATCTCTCCGCCGACGATATGGCCTCCGTTTGCATATCAGAATGCGTCGACAAGGCCTGCATCATTCCCGCCACCCGGCCGACGACATACGTGAGCCTACAGCGGTGTGATCAGGAGGAGGACGGCTGTGCAGAGCGCCGCCGCCCACGGCCGAGAGCGGCGGAGGGAATTTCCCGCCGGCAAATGTATCTGAGGAGCTATACTTTTTCAAGAGAGGACGCTGTGGACGCCTCTAAGAGTACTACTCAAAGCTGCCTTGGAAAGCTCAGGCCGCCGAAGATAGTCCGGAGGAGGAGCCGCTGTTTCGCCGTCGTGAGGGCCGTCGCCAAGCAGGCTTCTTCCGGCGGCGACTTGCTGTCAATGTTTCGACGGTGGCTTTGTTGTGTTGCTCAAGTTGATAGTCGCCGCCCCAAGCATTGGTGATCATGACTAAATCCTAATTATATGTTTGGTTGTATCAAAAACTTGGAAAATTAATAAATATCAATAATTGTTTCCTTTTATATGGAGTTTGAAGTTTAGACAAAAATTGATATTGCTTTGAACAAT

Coding sequence (CDS)

ATGGCCTCCGTTTGCATATCAGAATGCGTCGACAAGGCCTGCATCATTCCCGCCACCCGGCCGACGACATACGTGAGCCTACAGCGGTGTGATCAGGAGGAGGACGGCTGTGCAGAGCGCCGCCGCCCACGGCCGAGAGCGGCGGAGGGAATTTCCCGCCGGCAAATGTATCTGAGGAGCTATACTTTTTCAAGAGAGGACGCTGTGGACGCCTCTAAGAGTACTACTCAAAGCTGCCTTGGAAAGCTCAGGCCGCCGAAGATAGTCCGGAGGAGGAGCCGCTGTTTCGCCGTCGTGAGGGCCGTCGCCAAGCAGGCTTCTTCCGGCGGCGACTTGCTGTCAATGTTTCGACGGTGGCTTTGTTGTGTTGCTCAAGTTGATAGTCGCCGCCCCAAGCATTGGTGA

Protein sequence

MASVCISECVDKACIIPATRPTTYVSLQRCDQEEDGCAERRRPRPRAAEGISRRQMYLRSYTFSREDAVDASKSTTQSCLGKLRPPKIVRRRSRCFAVVRAVAKQASSGGDLLSMFRRWLCCVAQVDSRRPKHW

Homology

[Close]

BLAST of Sed0022195 vs. NCBI nr
Match: XP_022970388.1 (uncharacterized protein LOC111469389 [Cucurbita maxima])

HSP 1 Score: 163.3 bits (412), Expect = 1.4e-36
Identity = 94/136 (69.12%), Postives = 106/136 (77.94%), Query Frame = 0


Query: 1   MASVCISECVDKACIIPATRPTTYVSLQRCDQEEDGCAERRRPRPRAAEGISRRQMYLRS 60
           MASVCISEC++ ACIIPA RP TY SLQR  +EEDG  E RRPR RAA+GISRRQMYLRS
Sbjct: 1   MASVCISECINDACIIPAGRP-TYFSLQRWPEEEDGSVEPRRPRLRAADGISRRQMYLRS 60

Query: 61  YTFSREDAVDASKSTTQSCLGKL---RPPKIVR---RRSRCFAVVRAVAKQASSGGDLLS 120
           YTFSRED  +  +ST Q+CLGKL   R P  +R   RRSRCFA+VRA A +ASSG  LLS
Sbjct: 61  YTFSRED-TEVHESTAQTCLGKLKRRRRPAEIRGGGRRSRCFAIVRAAAAKASSGA-LLS 120

Query: 121 MFRRWLCCVAQVDSRR 131
           MFRR LCCVA+VD R+
Sbjct: 121 MFRRLLCCVAKVDGRK 133

[Close]

BLAST of Sed0022195 vs. NCBI nr
Match: XP_008457578.1 (PREDICTED: uncharacterized protein LOC103497245 [Cucumis melo] >KAA0033875.1 uncharacterized protein E6C27_scaffold43059G00600 [Cucumis melo var. makuwa] >TYK01259.1 uncharacterized protein E5676_scaffold49G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 5.5e-36
Identity = 92/136 (67.65%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 1   MASVCISECVDKACIIPATRPTTYVSLQRCDQEEDGCAERRRPRPRAAEGISRRQMYLRS 60
           MASVCISECVD ACI+ A +P TYV+LQR  +EE    ERRRPRPRAAEGISRRQMYLRS
Sbjct: 1   MASVCISECVDNACIVSAAQP-TYVNLQRWSEEEKWSTERRRPRPRAAEGISRRQMYLRS 60

Query: 61  YTFSREDAVDASKSTTQSCLGKL-----RPPKI--VRRRSRCFAVVRAVAKQASSGGDLL 120
           YTFSRED V   ++TTQ+C GK+     RP +I   RRRSRCFA+V+A A QASSG  L+
Sbjct: 61  YTFSREDTV-VPETTTQNCFGKIRRRRQRPARIRGSRRRSRCFAMVKAAATQASSGA-LV 120

Query: 121 SMFRRWLCCVAQVDSR 130
            MFRR LCCVA+VD R
Sbjct: 121 LMFRRLLCCVAKVDGR 133

[Close]

BLAST of Sed0022195 vs. NCBI nr
Match: XP_011648508.1 (uncharacterized protein LOC105434501 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 2.1e-35
Identity = 90/139 (64.75%), Postives = 104/139 (74.82%), Query Frame = 0


Query: 1   MASVCISECVDKACIIPATRPTTYVSLQRCDQEEDGCAERRRPRPRAAEGISRRQMYLRS 60
           MASVCISECVD ACI+ A RP TYV+LQR  +EE    ERRRPRPRAA+GISRRQMYLRS
Sbjct: 1   MASVCISECVDNACIVSAARP-TYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRS 60

Query: 61  YTFSREDAVDASKSTTQSCLGKL----RPPKIV---RRRSRCFAVVRAVAKQASSGGDLL 120
           YTFSRED V   ++TTQ+C GK+    R P  +   RRRSRC A+V+A A Q SSG  LL
Sbjct: 61  YTFSREDIV-VPETTTQNCFGKIRRRRRKPATIRGGRRRSRCLAMVKAAASQVSSGA-LL 120

Query: 121 SMFRRWLCCVAQVDSRRPK 133
            +FRR LCCVA+VD RR +
Sbjct: 121 FLFRRLLCCVAKVDGRRSR 136

[Close]

BLAST of Sed0022195 vs. NCBI nr
Match: KAE8653233.1 (hypothetical protein Csa_019953 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 2.1e-35
Identity = 90/139 (64.75%), Postives = 104/139 (74.82%), Query Frame = 0


Query: 1   MASVCISECVDKACIIPATRPTTYVSLQRCDQEEDGCAERRRPRPRAAEGISRRQMYLRS 60
           MASVCISECVD ACI+ A RP TYV+LQR  +EE    ERRRPRPRAA+GISRRQMYLRS
Sbjct: 1   MASVCISECVDNACIVSAARP-TYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRS 60

Query: 61  YTFSREDAVDASKSTTQSCLGKL----RPPKIV---RRRSRCFAVVRAVAKQASSGGDLL 120
           YTFSRED V   ++TTQ+C GK+    R P  +   RRRSRC A+V+A A Q SSG  LL
Sbjct: 61  YTFSREDIV-VPETTTQNCFGKIRRRRRKPATIRGGRRRSRCLAMVKAAASQVSSGA-LL 120

Query: 121 SMFRRWLCCVAQVDSRRPK 133
            +FRR LCCVA+VD RR +
Sbjct: 121 FLFRRLLCCVAKVDGRRSR 136

[Close]

BLAST of Sed0022195 vs. NCBI nr
Match: XP_022964754.1 (uncharacterized protein LOC111464745 [Cucurbita moschata])

HSP 1 Score: 158.7 bits (400), Expect = 3.5e-35
Identity = 93/136 (68.38%), Postives = 104/136 (76.47%), Query Frame = 0


Query: 1   MASVCISECVDKACIIPATRPTTYVSLQRCDQEEDGCAERRRPRPRAAEGISRRQMYLRS 60
           MASVCISEC++ ACIIPA RP TY SLQR  +EEDG  E RRPR RAA+GISRRQMYLRS
Sbjct: 1   MASVCISECINDACIIPAGRP-TYFSLQRWPEEEDGSVEPRRPRVRAADGISRRQMYLRS 60

Query: 61  YTFSREDAVDASKSTTQSCLGKL---RPPKIVR---RRSRCFAVVRAVAKQASSGGDLLS 120
           YTF RED V   +ST Q+CLGKL   R P  +R   RRSRCFA+VRA A +ASSG  LLS
Sbjct: 61  YTFCREDTV-VHESTAQTCLGKLKWRRRPAEIRGGGRRSRCFAIVRAAAAKASSGA-LLS 120

Query: 121 MFRRWLCCVAQVDSRR 131
           MFRR L CVA+VD R+
Sbjct: 121 MFRRLLSCVAKVDGRK 133

[Close]

BLAST of Sed0022195 vs. ExPASy TrEMBL
Match: A0A6J1I3Q2 (uncharacterized protein LOC111469389 OS=Cucurbita maxima OX=3661 GN=LOC111469389 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 7.0e-37
Identity = 94/136 (69.12%), Postives = 106/136 (77.94%), Query Frame = 0


Query: 1   MASVCISECVDKACIIPATRPTTYVSLQRCDQEEDGCAERRRPRPRAAEGISRRQMYLRS 60
           MASVCISEC++ ACIIPA RP TY SLQR  +EEDG  E RRPR RAA+GISRRQMYLRS
Sbjct: 1   MASVCISECINDACIIPAGRP-TYFSLQRWPEEEDGSVEPRRPRLRAADGISRRQMYLRS 60

Query: 61  YTFSREDAVDASKSTTQSCLGKL---RPPKIVR---RRSRCFAVVRAVAKQASSGGDLLS 120
           YTFSRED  +  +ST Q+CLGKL   R P  +R   RRSRCFA+VRA A +ASSG  LLS
Sbjct: 61  YTFSRED-TEVHESTAQTCLGKLKRRRRPAEIRGGGRRSRCFAIVRAAAAKASSGA-LLS 120

Query: 121 MFRRWLCCVAQVDSRR 131
           MFRR LCCVA+VD R+
Sbjct: 121 MFRRLLCCVAKVDGRK 133

[Close]

BLAST of Sed0022195 vs. ExPASy TrEMBL
Match: A0A5A7SXG3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00460 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.6e-36
Identity = 92/136 (67.65%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 1   MASVCISECVDKACIIPATRPTTYVSLQRCDQEEDGCAERRRPRPRAAEGISRRQMYLRS 60
           MASVCISECVD ACI+ A +P TYV+LQR  +EE    ERRRPRPRAAEGISRRQMYLRS
Sbjct: 1   MASVCISECVDNACIVSAAQP-TYVNLQRWSEEEKWSTERRRPRPRAAEGISRRQMYLRS 60

Query: 61  YTFSREDAVDASKSTTQSCLGKL-----RPPKI--VRRRSRCFAVVRAVAKQASSGGDLL 120
           YTFSRED V   ++TTQ+C GK+     RP +I   RRRSRCFA+V+A A QASSG  L+
Sbjct: 61  YTFSREDTV-VPETTTQNCFGKIRRRRQRPARIRGSRRRSRCFAMVKAAATQASSGA-LV 120

Query: 121 SMFRRWLCCVAQVDSR 130
            MFRR LCCVA+VD R
Sbjct: 121 LMFRRLLCCVAKVDGR 133

[Close]

BLAST of Sed0022195 vs. ExPASy TrEMBL
Match: A0A1S3C748 (uncharacterized protein LOC103497245 OS=Cucumis melo OX=3656 GN=LOC103497245 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.6e-36
Identity = 92/136 (67.65%), Postives = 105/136 (77.21%), Query Frame = 0


Query: 1   MASVCISECVDKACIIPATRPTTYVSLQRCDQEEDGCAERRRPRPRAAEGISRRQMYLRS 60
           MASVCISECVD ACI+ A +P TYV+LQR  +EE    ERRRPRPRAAEGISRRQMYLRS
Sbjct: 1   MASVCISECVDNACIVSAAQP-TYVNLQRWSEEEKWSTERRRPRPRAAEGISRRQMYLRS 60

Query: 61  YTFSREDAVDASKSTTQSCLGKL-----RPPKI--VRRRSRCFAVVRAVAKQASSGGDLL 120
           YTFSRED V   ++TTQ+C GK+     RP +I   RRRSRCFA+V+A A QASSG  L+
Sbjct: 61  YTFSREDTV-VPETTTQNCFGKIRRRRQRPARIRGSRRRSRCFAMVKAAATQASSGA-LV 120

Query: 121 SMFRRWLCCVAQVDSR 130
            MFRR LCCVA+VD R
Sbjct: 121 LMFRRLLCCVAKVDGR 133

[Close]

BLAST of Sed0022195 vs. ExPASy TrEMBL
Match: A0A0A0LXY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G497810 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.0e-35
Identity = 90/139 (64.75%), Postives = 104/139 (74.82%), Query Frame = 0


Query: 1   MASVCISECVDKACIIPATRPTTYVSLQRCDQEEDGCAERRRPRPRAAEGISRRQMYLRS 60
           MASVCISECVD ACI+ A RP TYV+LQR  +EE    ERRRPRPRAA+GISRRQMYLRS
Sbjct: 1   MASVCISECVDNACIVSAARP-TYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRS 60

Query: 61  YTFSREDAVDASKSTTQSCLGKL----RPPKIV---RRRSRCFAVVRAVAKQASSGGDLL 120
           YTFSRED V   ++TTQ+C GK+    R P  +   RRRSRC A+V+A A Q SSG  LL
Sbjct: 61  YTFSREDIV-VPETTTQNCFGKIRRRRRKPATIRGGRRRSRCLAMVKAAASQVSSGA-LL 120

Query: 121 SMFRRWLCCVAQVDSRRPK 133
            +FRR LCCVA+VD RR +
Sbjct: 121 FLFRRLLCCVAKVDGRRSR 136

[Close]

BLAST of Sed0022195 vs. ExPASy TrEMBL
Match: A0A6J1HP59 (uncharacterized protein LOC111464745 OS=Cucurbita moschata OX=3662 GN=LOC111464745 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.7e-35
Identity = 93/136 (68.38%), Postives = 104/136 (76.47%), Query Frame = 0


Query: 1   MASVCISECVDKACIIPATRPTTYVSLQRCDQEEDGCAERRRPRPRAAEGISRRQMYLRS 60
           MASVCISEC++ ACIIPA RP TY SLQR  +EEDG  E RRPR RAA+GISRRQMYLRS
Sbjct: 1   MASVCISECINDACIIPAGRP-TYFSLQRWPEEEDGSVEPRRPRVRAADGISRRQMYLRS 60

Query: 61  YTFSREDAVDASKSTTQSCLGKL---RPPKIVR---RRSRCFAVVRAVAKQASSGGDLLS 120
           YTF RED V   +ST Q+CLGKL   R P  +R   RRSRCFA+VRA A +ASSG  LLS
Sbjct: 61  YTFCREDTV-VHESTAQTCLGKLKWRRRPAEIRGGGRRSRCFAIVRAAAAKASSGA-LLS 120

Query: 121 MFRRWLCCVAQVDSRR 131
           MFRR L CVA+VD R+
Sbjct: 121 MFRRLLSCVAKVDGRK 133

[Close]

BLAST of Sed0022195 vs. TAIR 10
Match: AT5G02640.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46300.1); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-09
Identity = 57/159 (35.85%), Postives = 76/159 (47.80%), Query Frame = 0


Query: 1   MASVCISECVDKA--CIIPATRP--TTYVSLQRCDQEEDGCAERRR-----PRPRAAEGI 60
           M SVCIS C++ A    +P  RP   +YV+L +  + +       R     P  R  + I
Sbjct: 1   MNSVCISSCINDAHDPRVP-VRPVRASYVNLYKWPESDAEFVRSVRRGGGLPAARVVDSI 60

Query: 61  SRRQMYLRSYTFSREDAVDASKS------TTQSCLGKLRPPKIVRRRSR---CFAVVRAV 120
           S RQMYLRSYTFSRED  D SKS      T  SCLG+++     RR+S+      +V + 
Sbjct: 61  SCRQMYLRSYTFSRED--DESKSEKVSSGTQTSCLGRVKGTASSRRKSKEENGIIIVEST 120

Query: 121 A--------------KQASSGGDLLSMFRRWLCCVAQVD 128
                          KQ  +   +L +FRR L C A VD
Sbjct: 121 KPRRRGEKRRVSRKNKQEQACSVILRIFRRLLSCAATVD 156

The following BLAST results are available for this feature:

BLAST of Sed0022195 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970388.1	1.4e-36	69.12	uncharacterized protein LOC111469389 [Cucurbita maxima]	[more]
XP_008457578.1	5.5e-36	67.65	PREDICTED: uncharacterized protein LOC103497245 [Cucumis melo] >KAA0033875.1 unc...	[more]
XP_011648508.1	2.1e-35	64.75	uncharacterized protein LOC105434501 [Cucumis sativus]	[more]
KAE8653233.1	2.1e-35	64.75	hypothetical protein Csa_019953 [Cucumis sativus]	[more]
XP_022964754.1	3.5e-35	68.38	uncharacterized protein LOC111464745 [Cucurbita moschata]	[more]

BLAST of Sed0022195 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0022195 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I3Q2	7.0e-37	69.12	uncharacterized protein LOC111469389 OS=Cucurbita maxima OX=3661 GN=LOC111469389...	[more]
A0A5A7SXG3	2.6e-36	67.65	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C748	2.6e-36	67.65	uncharacterized protein LOC103497245 OS=Cucumis melo OX=3656 GN=LOC103497245 PE=...	[more]
A0A0A0LXY3	1.0e-35	64.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G497810 PE=4 SV=1	[more]
A0A6J1HP59	1.7e-35	68.38	uncharacterized protein LOC111464745 OS=Cucurbita moschata OX=3662 GN=LOC1114647...	[more]

BLAST of Sed0022195 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02640.1	2.1e-09	35.85	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35304:SF2	SUBFAMILY NOT NAMED	coord: 1..131
None	No IPR available	PANTHER	PTHR35304	OS05G0120300 PROTEIN-RELATED	coord: 1..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0022195.1	Sed0022195.1	mRNA