Sed0021859 (gene) Chayote v1

Overview
NameSed0021859
Typegene
OrganismSechium edule (Chayote v1)
DescriptionLEA_2 domain-containing protein
LocationLG05: 28584425 .. 28584890 (-)
RNA-Seq ExpressionSed0021859
SyntenySed0021859
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGACACCTCTCTCCACTCTTCCCATTTCACATTCTTTTTCATCTAAATAATATTACCAAAAAATAAATTTTAAAAAAAACCCCAAAATTTCAAATCCCCTGTTTTTCTCTTGAAACCCAAAATGGAATTGAGTTTTTTAAGGCGCTTCTGCGGCGGTTCCGGGTACGTGAAAAGAGGGCACTACCCGGTGGCGGTGGCTGTTCTGGGGCGGCGGTCGCCGGAGAAGAGGGCGGCGCGTTGGAGAGCGCTGTGGCGGCGGCTGAAGAAGATCGGAATGTTGAGCAGCTGCGGTGGGCCACGTGAGGCGCACGTGCCGTACAATCCACAGACTTATTTGCAGAACTTCGATGAAGGTTCTGTGATGGTGATCGGAGATGATCTGGACGCCGTTTCTCGATCTTTCTCGGCCCGGTTCGCCATTTTTCAACGGCCGGCTCAGTTTGTGGTTCATAAAGTTAATGTTTAG

mRNA sequence

TGACACCTCTCTCCACTCTTCCCATTTCACATTCTTTTTCATCTAAATAATATTACCAAAAAATAAATTTTAAAAAAAACCCCAAAATTTCAAATCCCCTGTTTTTCTCTTGAAACCCAAAATGGAATTGAGTTTTTTAAGGCGCTTCTGCGGCGGTTCCGGGTACGTGAAAAGAGGGCACTACCCGGTGGCGGTGGCTGTTCTGGGGCGGCGGTCGCCGGAGAAGAGGGCGGCGCGTTGGAGAGCGCTGTGGCGGCGGCTGAAGAAGATCGGAATGTTGAGCAGCTGCGGTGGGCCACGTGAGGCGCACGTGCCGTACAATCCACAGACTTATTTGCAGAACTTCGATGAAGGTTCTGTGATGGTGATCGGAGATGATCTGGACGCCGTTTCTCGATCTTTCTCGGCCCGGTTCGCCATTTTTCAACGGCCGGCTCAGTTTGTGGTTCATAAAGTTAATGTTTAG

Coding sequence (CDS)

ATGGAATTGAGTTTTTTAAGGCGCTTCTGCGGCGGTTCCGGGTACGTGAAAAGAGGGCACTACCCGGTGGCGGTGGCTGTTCTGGGGCGGCGGTCGCCGGAGAAGAGGGCGGCGCGTTGGAGAGCGCTGTGGCGGCGGCTGAAGAAGATCGGAATGTTGAGCAGCTGCGGTGGGCCACGTGAGGCGCACGTGCCGTACAATCCACAGACTTATTTGCAGAACTTCGATGAAGGTTCTGTGATGGTGATCGGAGATGATCTGGACGCCGTTTCTCGATCTTTCTCGGCCCGGTTCGCCATTTTTCAACGGCCGGCTCAGTTTGTGGTTCATAAAGTTAATGTTTAG

Protein sequence

MELSFLRRFCGGSGYVKRGHYPVAVAVLGRRSPEKRAARWRALWRRLKKIGMLSSCGGPREAHVPYNPQTYLQNFDEGSVMVIGDDLDAVSRSFSARFAIFQRPAQFVVHKVNV
Homology
BLAST of Sed0021859 vs. NCBI nr
Match: KAG6606769.1 (hypothetical protein SDJN03_00111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 72/124 (58.06%), Postives = 85/124 (68.55%), Query Frame = 0

Query: 1   MELSFLRRFCGGSGYVKRGHY-PVAVAVLGRRSPEKRAARWRALWRRLKK-IGMLSSCG- 60
           M LS LR   GG GYV+RG+Y  V VAVL     EK  +RWR +WRRLKK    +  CG 
Sbjct: 1   MNLSCLRGAGGGIGYVERGYYSAVTVAVL-----EKTTSRWRVVWRRLKKEKKRMFRCGM 60

Query: 61  -GPREAHVPYNPQTYLQNFDEGSVMVIG-DDLDAVSRSFSARFAIF-----QRPAQFVVH 115
            G RE HVPYNP+TYLQNFD+GSVM++G DD DA+SRSFSARFAI      + P +FVV 
Sbjct: 61  SGAREVHVPYNPKTYLQNFDDGSVMMVGDDDPDAISRSFSARFAISSAILRRPPPEFVVL 119

BLAST of Sed0021859 vs. NCBI nr
Match: KAG7036482.1 (hypothetical protein SDJN02_00099, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-23
Identity = 72/122 (59.02%), Postives = 84/122 (68.85%), Query Frame = 0

Query: 1   MELSFLRRFCGGSGYVKRGHY-PVAVAVLGRRSPEKRAARWRALWRRLKK-IGMLSSCG- 60
           M LS LR   GG GYV+RG+Y  V VAVL     EK  ARWR +WRRLKK    +  CG 
Sbjct: 1   MNLSCLRGAGGGIGYVERGYYSAVTVAVL-----EKTTARWRVVWRRLKKEKKRMFRCGM 60

Query: 61  -GPREAHVPYNPQTYLQNFDEGSVMVIG-DDLDAVSRSFSARFAIF-----QRPAQFVVH 113
            G RE HVPYNP+TYLQNFD+GSVM++G DD DA+SRSFSARFAI      + P +FVV 
Sbjct: 61  SGAREVHVPYNPKTYLQNFDDGSVMMVGDDDPDAISRSFSARFAISSAILRRPPPEFVVL 117

BLAST of Sed0021859 vs. NCBI nr
Match: GAY51209.1 (hypothetical protein CUMW_132530 [Citrus unshiu])

HSP 1 Score: 71.6 bits (174), Expect = 4.8e-09
Identity = 44/105 (41.90%), Postives = 56/105 (53.33%), Query Frame = 0

Query: 7   RRFCGGSGYVKRGHYPVAV---AVLGRRSPEKRAARWRALWRRLK--KIGMLSSCGGPRE 66
           +  C    YVKRG+  V      + G ++P     RWR LWR++K  K  +     G  +
Sbjct: 53  QNMCCCQSYVKRGYDRVLSFNGLITGSKTP-----RWRLLWRKIKRDKKRIFDCSSGGTD 112

Query: 67  AHVPYNPQTYLQNFDEGSVMVIGDDLDAVSRSFSARFAIFQRPAQ 107
            HVPY+P TY QNFD+G V     D D  SRSFSARFA+  R  Q
Sbjct: 113 VHVPYDPYTYSQNFDQGYVWA---DPDNASRSFSARFAVPSRVFQ 149

BLAST of Sed0021859 vs. NCBI nr
Match: KDO51221.1 (hypothetical protein CISIN_1g044132mg [Citrus sinensis])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 44/105 (41.90%), Postives = 55/105 (52.38%), Query Frame = 0

Query: 7   RRFCGGSGYVKRGHYPVAV---AVLGRRSPEKRAARWRALWRRLK--KIGMLSSCGGPRE 66
           +  C    YVKRG+  V      + G ++P     RWR LWR++K  K  +     G   
Sbjct: 53  QNMCCCQSYVKRGYDRVLSFNGLITGSKTP-----RWRLLWRKIKREKKRIFDCSSGSTN 112

Query: 67  AHVPYNPQTYLQNFDEGSVMVIGDDLDAVSRSFSARFAIFQRPAQ 107
            HVPY+P TY QNFD+G V     D D  SRSFSARFA+  R  Q
Sbjct: 113 VHVPYDPCTYSQNFDQGYVWA---DPDNASRSFSARFAVPSRVFQ 149

BLAST of Sed0021859 vs. NCBI nr
Match: ESR40256.1 (hypothetical protein CICLE_v10026796mg [Citrus clementina])

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 43/105 (40.95%), Postives = 55/105 (52.38%), Query Frame = 0

Query: 7   RRFCGGSGYVKRGHYPVAV---AVLGRRSPEKRAARWRALWRRLK--KIGMLSSCGGPRE 66
           +  C    YV+RG+  V      + G ++P     RWR LWR++K  K  +     G   
Sbjct: 12  QNMCCCQSYVRRGYDRVLSFNGLITGSKTP-----RWRLLWRKIKREKERIFDCSSGSTN 71

Query: 67  AHVPYNPQTYLQNFDEGSVMVIGDDLDAVSRSFSARFAIFQRPAQ 107
            HVPY+P TY QNFD+G V     D D  SRSFSARFA+  R  Q
Sbjct: 72  VHVPYDPYTYSQNFDQGYVWA---DPDNASRSFSARFAVPSRVFQ 108

BLAST of Sed0021859 vs. ExPASy TrEMBL
Match: A0A2H5PFR9 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_132530 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-09
Identity = 44/105 (41.90%), Postives = 56/105 (53.33%), Query Frame = 0

Query: 7   RRFCGGSGYVKRGHYPVAV---AVLGRRSPEKRAARWRALWRRLK--KIGMLSSCGGPRE 66
           +  C    YVKRG+  V      + G ++P     RWR LWR++K  K  +     G  +
Sbjct: 53  QNMCCCQSYVKRGYDRVLSFNGLITGSKTP-----RWRLLWRKIKRDKKRIFDCSSGGTD 112

Query: 67  AHVPYNPQTYLQNFDEGSVMVIGDDLDAVSRSFSARFAIFQRPAQ 107
            HVPY+P TY QNFD+G V     D D  SRSFSARFA+  R  Q
Sbjct: 113 VHVPYDPYTYSQNFDQGYVWA---DPDNASRSFSARFAVPSRVFQ 149

BLAST of Sed0021859 vs. ExPASy TrEMBL
Match: A0A067EJZ4 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044132mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.2e-09
Identity = 44/105 (41.90%), Postives = 55/105 (52.38%), Query Frame = 0

Query: 7   RRFCGGSGYVKRGHYPVAV---AVLGRRSPEKRAARWRALWRRLK--KIGMLSSCGGPRE 66
           +  C    YVKRG+  V      + G ++P     RWR LWR++K  K  +     G   
Sbjct: 53  QNMCCCQSYVKRGYDRVLSFNGLITGSKTP-----RWRLLWRKIKREKKRIFDCSSGSTN 112

Query: 67  AHVPYNPQTYLQNFDEGSVMVIGDDLDAVSRSFSARFAIFQRPAQ 107
            HVPY+P TY QNFD+G V     D D  SRSFSARFA+  R  Q
Sbjct: 113 VHVPYDPCTYSQNFDQGYVWA---DPDNASRSFSARFAVPSRVFQ 149

BLAST of Sed0021859 vs. ExPASy TrEMBL
Match: V4ST02 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026796mg PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.8e-09
Identity = 43/105 (40.95%), Postives = 55/105 (52.38%), Query Frame = 0

Query: 7   RRFCGGSGYVKRGHYPVAV---AVLGRRSPEKRAARWRALWRRLK--KIGMLSSCGGPRE 66
           +  C    YV+RG+  V      + G ++P     RWR LWR++K  K  +     G   
Sbjct: 12  QNMCCCQSYVRRGYDRVLSFNGLITGSKTP-----RWRLLWRKIKREKERIFDCSSGSTN 71

Query: 67  AHVPYNPQTYLQNFDEGSVMVIGDDLDAVSRSFSARFAIFQRPAQ 107
            HVPY+P TY QNFD+G V     D D  SRSFSARFA+  R  Q
Sbjct: 72  VHVPYDPYTYSQNFDQGYVWA---DPDNASRSFSARFAVPSRVFQ 108

BLAST of Sed0021859 vs. ExPASy TrEMBL
Match: A0A5C7IIL3 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004028 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.8e-08
Identity = 42/103 (40.78%), Postives = 51/103 (49.51%), Query Frame = 0

Query: 9   FCGGSGYVKRGH---YPVAVAVLGRRSPEKRAARWRALWRRLKK-----IGMLSSCGGPR 68
           FC    YVK G+     +   V G   P      WR LWR++K+         SS     
Sbjct: 14  FCWCQNYVKAGYDQMLSLNELVTGSNIP-----GWRLLWRKIKREKKRIFNCSSSTSSTT 73

Query: 69  EAHVPYNPQTYLQNFDEGSVMVIGDDLDAVSRSFSARFAIFQR 104
             HVPY+P TY QNFD+G +     D D VSRSFSARFA+  R
Sbjct: 74  RVHVPYDPYTYSQNFDQGFIWA---DPDNVSRSFSARFAVPSR 108

BLAST of Sed0021859 vs. ExPASy TrEMBL
Match: M0U645 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.8e-08
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 0

Query: 38  ARWRALWRRL--KKIGMLSSCGGPREAHVPYNPQTYLQNFDEGSVMVIGDDLDAVSRSFS 97
           +RWR LWRR+  +K  MLSS       H+PY+P TY QNFDEGS  V  D+L   SRSFS
Sbjct: 55  SRWRGLWRRIVKEKRRMLSSA---NPTHLPYDPYTYAQNFDEGSASVEPDNL---SRSFS 113

Query: 98  ARFAI 101
           ARFA+
Sbjct: 115 ARFAV 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6606769.11.5e-2358.06hypothetical protein SDJN03_00111, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7036482.12.0e-2359.02hypothetical protein SDJN02_00099, partial [Cucurbita argyrosperma subsp. argyro... [more]
GAY51209.14.8e-0941.90hypothetical protein CUMW_132530 [Citrus unshiu][more]
KDO51221.11.1e-0841.90hypothetical protein CISIN_1g044132mg [Citrus sinensis][more]
ESR40256.11.4e-0840.95hypothetical protein CICLE_v10026796mg [Citrus clementina][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2H5PFR92.3e-0941.90Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_132530 PE=4 SV=1[more]
A0A067EJZ45.2e-0941.90Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g044132mg PE=4 SV=1[more]
V4ST026.8e-0940.95Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026796mg PE=4 ... [more]
A0A5C7IIL39.8e-0840.78Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_004028 PE=4 SV=1[more]
M0U6459.8e-0856.92Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 34..100
NoneNo IPR availablePANTHERPTHR33168:SF70OS01G0182300 PROTEINcoord: 34..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0021859.1Sed0021859.1mRNA