Sed0020664 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CACAAAATTCCCTTTTCTCTTCCATTTTTTACTTCAAAGCCCCCTTTTCTCATTTTCCTCTGTTTTCTTCGAATAAACCCTCTGTTTTTTTTCCCTTCAAAATCCCTCTTTTGTTGGTTGTTTTTTTTACATTTCATGTTTGGATTTCAAATGGGGTTTTCCAAAAAGTCCCAAATCGACGGCGGATTTGAAGCAGAGAGCAAAAAATGGGTAATCGCCGGCTTGCCGGCGAGGTCGTCGTTGAAGCCAATCAACACGAAATCGAAGGTCAAAGACGGCGGCGATGACGGCGGCGACAGGTCGTGTTCGACGACGCCGACAGCGAAGGAAGCGAGATTACCGGCGAAACTCAGCTGCCCGCCGGCGCCGAGGAAGCGGAGATCGGAAAAATCAAGCTCAAATCAAAATCACCTTAGGGAGTTTTTCAATCCACCGGATTTAGAATCTGTCTTCAAACTCCGAGTTTAAAAAGCCCAATTGGGTTTGTAATAGCTGAGAATTTAGGGGTTTCAAATTTTACTATGTGGTTTTAGTTTTGTGCTTGTTTAAATTTTCTCTGTTTAGGACTATAATATATATACTTTTCTAATGTTATTGGTAGTTCTTAGTAGTAAGATGAAGATGTTGTATAAAAGATTTGATATTTGTTATCTAAATGGGT CACAAAATTCCCTTTTCTCTTCCATTTTTTACTTCAAAGCCCCCTTTTCTCATTTTCCTCTGTTTTCTTCGAATAAACCCTCTGTTTTTTTTCCCTTCAAAATCCCTCTTTTGTTGGTTGTTTTTTTTACATTTCATGTTTGGATTTCAAATGGGGTTTTCCAAAAAGTCCCAAATCGACGGCGGATTTGAAGCAGAGAGCAAAAAATGGGTAATCGCCGGCTTGCCGGCGAGGTCGTCGTTGAAGCCAATCAACACGAAATCGAAGGTCAAAGACGGCGGCGATGACGGCGGCGACAGGTCGTGTTCGACGACGCCGACAGCGAAGGAAGCGAGATTACCGGCGAAACTCAGCTGCCCGCCGGCGCCGAGGAAGCGGAGATCGGAAAAATCAAGCTCAAATCAAAATCACCTTAGGGAGTTTTTCAATCCACCGGATTTAGAATCTGTCTTCAAACTCCGAGTTTAAAAAGCCCAATTGGGTTTGTAATAGCTGAGAATTTAGGGGTTTCAAATTTTACTATGTGGTTTTAGTTTTGTGCTTGTTTAAATTTTCTCTGTTTAGGACTATAATATATATACTTTTCTAATGTTATTGGTAGTTCTTAGTAGTAAGATGAAGATGTTGTATAAAAGATTTGATATTTGTTATCTAAATGGGT ATGTTTGGATTTCAAATGGGGTTTTCCAAAAAGTCCCAAATCGACGGCGGATTTGAAGCAGAGAGCAAAAAATGGGTAATCGCCGGCTTGCCGGCGAGGTCGTCGTTGAAGCCAATCAACACGAAATCGAAGGTCAAAGACGGCGGCGATGACGGCGGCGACAGGTCGTGTTCGACGACGCCGACAGCGAAGGAAGCGAGATTACCGGCGAAACTCAGCTGCCCGCCGGCGCCGAGGAAGCGGAGATCGGAAAAATCAAGCTCAAATCAAAATCACCTTAGGGAGTTTTTCAATCCACCGGATTTAGAATCTGTCTTCAAACTCCGAGTTTAA MFGFQMGFSKKSQIDGGFEAESKKWVIAGLPARSSLKPINTKSKVKDGGDDGGDRSCSTTPTAKEARLPAKLSCPPAPRKRRSEKSSSNQNHLREFFNPPDLESVFKLRV Homology
BLAST of Sed0020664 vs. NCBI nr
Match: XP_022991036.1 (cyclin-dependent protein kinase inhibitor SMR6-like [Cucurbita maxima]) HSP 1 Score: 184.9 bits (468), Expect = 3.8e-43 Identity = 94/110 (85.45%), Postives = 98/110 (89.09%), Query Frame = 0
BLAST of Sed0020664 vs. NCBI nr
Match: KAG7033096.1 (Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 179.1 bits (453), Expect = 2.1e-41 Identity = 92/105 (87.62%), Postives = 95/105 (90.48%), Query Frame = 0
BLAST of Sed0020664 vs. NCBI nr
Match: KAG6602418.1 (Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 176.8 bits (447), Expect = 1.0e-40 Identity = 91/105 (86.67%), Postives = 94/105 (89.52%), Query Frame = 0
BLAST of Sed0020664 vs. NCBI nr
Match: XP_023550994.1 (cyclin-dependent protein kinase inhibitor SMR6 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 173.3 bits (438), Expect = 1.1e-39 Identity = 89/105 (84.76%), Postives = 94/105 (89.52%), Query Frame = 0
BLAST of Sed0020664 vs. NCBI nr
Match: KAG7016206.1 (Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 172.9 bits (437), Expect = 1.5e-39 Identity = 89/105 (84.76%), Postives = 94/105 (89.52%), Query Frame = 0
BLAST of Sed0020664 vs. ExPASy Swiss-Prot
Match: Q29Q81 (Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 GN=SMR6 PE=1 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 6.5e-22 Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 0
BLAST of Sed0020664 vs. ExPASy Swiss-Prot
Match: Q9SAD3 (Cyclin-dependent protein kinase inhibitor SMR8 OS=Arabidopsis thaliana OX=3702 GN=SMR8 PE=1 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 1.5e-13 Identity = 47/105 (44.76%), Postives = 61/105 (58.10%), Query Frame = 0
BLAST of Sed0020664 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 2.1e-12 Identity = 48/108 (44.44%), Postives = 61/108 (56.48%), Query Frame = 0
BLAST of Sed0020664 vs. ExPASy Swiss-Prot
Match: Q9LVX6 (Cyclin-dependent protein kinase inhibitor SMR7 OS=Arabidopsis thaliana OX=3702 GN=SMR7 PE=2 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 2.4e-08 Identity = 40/102 (39.22%), Postives = 52/102 (50.98%), Query Frame = 0
BLAST of Sed0020664 vs. ExPASy Swiss-Prot
Match: F4IWB3 (Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 GN=SMR13 PE=4 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 6.1e-04 Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 0
BLAST of Sed0020664 vs. ExPASy TrEMBL
Match: A0A6J1JPL5 (cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita maxima OX=3661 GN=LOC111487749 PE=4 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 1.8e-43 Identity = 94/110 (85.45%), Postives = 98/110 (89.09%), Query Frame = 0
BLAST of Sed0020664 vs. ExPASy TrEMBL
Match: A0A6J1JVL3 (cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita maxima OX=3661 GN=LOC111489273 PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 8.0e-39 Identity = 88/105 (83.81%), Postives = 94/105 (89.52%), Query Frame = 0
BLAST of Sed0020664 vs. ExPASy TrEMBL
Match: A0A6J1FHD8 (cyclin-dependent protein kinase inhibitor SMR6 OS=Cucurbita moschata OX=3662 GN=LOC111445393 PE=4 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 1.4e-38 Identity = 87/105 (82.86%), Postives = 92/105 (87.62%), Query Frame = 0
BLAST of Sed0020664 vs. ExPASy TrEMBL
Match: A0A5D3BY33 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00180 PE=4 SV=1) HSP 1 Score: 165.6 bits (418), Expect = 1.2e-37 Identity = 85/105 (80.95%), Postives = 89/105 (84.76%), Query Frame = 0
BLAST of Sed0020664 vs. ExPASy TrEMBL
Match: A0A1S3C883 (uncharacterized protein LOC103498100 OS=Cucumis melo OX=3656 GN=LOC103498100 PE=4 SV=1) HSP 1 Score: 165.6 bits (418), Expect = 1.2e-37 Identity = 85/105 (80.95%), Postives = 89/105 (84.76%), Query Frame = 0
BLAST of Sed0020664 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 104.8 bits (260), Expect = 4.6e-23 Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 0
BLAST of Sed0020664 vs. TAIR 10
Match: AT1G10690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60783.1); Has 59 Blast hits to 59 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 77.0 bits (188), Expect = 1.0e-14 Identity = 47/105 (44.76%), Postives = 61/105 (58.10%), Query Frame = 0
BLAST of Sed0020664 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 73.2 bits (178), Expect = 1.5e-13 Identity = 48/108 (44.44%), Postives = 61/108 (56.48%), Query Frame = 0
BLAST of Sed0020664 vs. TAIR 10
Match: AT3G27630.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40460.1); Has 36 Blast hits to 36 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 59.7 bits (143), Expect = 1.7e-09 Identity = 40/102 (39.22%), Postives = 52/102 (50.98%), Query Frame = 0
BLAST of Sed0020664 vs. TAIR 10
Match: AT3G20898.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.1 bits (105), Expect = 4.4e-05 Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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