Sed0020326 (gene) Chayote v1

Overview


Name	Sed0020326
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Microtubule-associated proteins 70-5 isoform 1
Location	LG01: 10378222 .. 10378518 (-)
RNA-Seq Expression	Sed0020326
Synteny	Sed0020326

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGATAACTGTAGTAGCAGCAGTTTCAGTGGTTCTTTCATTGTTTGCATATGCAGCCCCCAGTTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTTTTTCTCTCCACAGCCGTACTCTTGGTGGCAATGACTGCCTTTGGAGGAGGTTTTCAAGTTGGAACCGAAGTGCATGGTGAAAGAGCAGGTGAAAAGATCCTAGATTACGTTGCAGGACGGCCTGAATACGCCGAATACCAATATAAGTACCAATAA

mRNA sequence

ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGATAACTGTAGTAGCAGCAGTTTCAGTGGTTCTTTCATTGTTTGCATATGCAGCCCCCAGTTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTTTTTCTCTCCACAGCCGTACTCTTGGTGGCAATGACTGCCTTTGGAGGAGGTTTTCAAGTTGGAACCGAAGTGCATGGTGAAAGAGCAGGTGAAAAGATCCTAGATTACGTTGCAGGACGGCCTGAATACGCCGAATACCAATATAAGTACCAATAA

Coding sequence (CDS)

ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGATAACTGTAGTAGCAGCAGTTTCAGTGGTTCTTTCATTGTTTGCATATGCAGCCCCCAGTTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTTTTTCTCTCCACAGCCGTACTCTTGGTGGCAATGACTGCCTTTGGAGGAGGTTTTCAAGTTGGAACCGAAGTGCATGGTGAAAGAGCAGGTGAAAAGATCCTAGATTACGTTGCAGGACGGCCTGAATACGCCGAATACCAATATAAGTACCAATAA

Protein sequence

MDIQVIQTKVLQHKDQITVVAAVSVVLSLFAYAAPSFLSILAFFWPLFLSTAVLLVAMTAFGGGFQVGTEVHGERAGEKILDYVAGRPEYAEYQYKYQ

Homology

[Close]

BLAST of Sed0020326 vs. NCBI nr
Match: KAG7012637.1 (hypothetical protein SDJN02_25389, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.2 bits (448), Expect = 7.0e-41
Identity = 93/98 (94.90%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MDIQVIQTKVLQHKDQITVVAAVSVVLSLFAYAAPSFLSILAFFWPLFLSTAVLLVAMTA 60
          MDIQVIQTKVLQHKDQ+TVVAAVSVV+SLF YAAP FLSILAFFWPLFLSTAVLLVAMTA
Sbjct: 1  MDIQVIQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTA 60

Query: 61 FGGGFQVGTEVHGERAGEKILDYVAGRPEYAEYQYKYQ 99
          FGGGFQVGTEVHGERAGE+ILDYVAGRPEYAEYQYKYQ
Sbjct: 61 FGGGFQVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 98

[Close]

BLAST of Sed0020326 vs. NCBI nr
Match: KAG6573520.1 (hypothetical protein SDJN03_27407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.0 bits (445), Expect = 1.6e-40
Identity = 92/98 (93.88%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MDIQVIQTKVLQHKDQITVVAAVSVVLSLFAYAAPSFLSILAFFWPLFLSTAVLLVAMTA 60
          MDIQVIQTKVLQHKDQ+TVVAAVSVV+SLF YAAP FLSILAFFWPLFLSTAVLLVAMTA
Sbjct: 1  MDIQVIQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTA 60

Query: 61 FGGGFQVGTEVHGERAGEKILDYVAGRPEYAEYQYKYQ 99
          FGGGFQVGTEVHGE+AGE+ILDYVAGRPEYAEYQYKYQ
Sbjct: 61 FGGGFQVGTEVHGEKAGERILDYVAGRPEYAEYQYKYQ 98

[Close]

BLAST of Sed0020326 vs. NCBI nr
Match: KAA0042343.1 (hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK15467.1 hypothetical protein E5676_scaffold477G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 2.3e-31
Identity = 78/93 (83.87%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 6  IQTKVLQHKDQITVVAAVSVVLSLFAYAAPSFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          IQ K+LQHKDQITVVAAVSVVLSLF Y AP FLSILAFFWPLF STAVLLV MTAFGGGF
Sbjct: 3  IQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGF 62

Query: 66 QVGTEVHGERAGEKILDYVAGRPEYAEYQYKYQ 99
          QVG+E+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 63 QVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Sed0020326 vs. NCBI nr
Match: KGN64996.1 (hypothetical protein Csa_022896 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 3.0e-31
Identity = 78/93 (83.87%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 6  IQTKVLQHKDQITVVAAVSVVLSLFAYAAPSFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  KVLQHKDQ+TVVAAVSVVLSLF YAAP FLSILAFFWPLF STAVLLV M AFGGGF
Sbjct: 3  IHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62

Query: 66 QVGTEVHGERAGEKILDYVAGRPEYAEYQYKYQ 99
          QVGTE+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Sed0020326 vs. NCBI nr
Match: KAG6583721.1 (hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 67/95 (70.53%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 6   IQTKVLQHKDQITVVAAVSVVLSLFAYAAPSFLSILAFFWPLFLSTAVLLVAM-TAFGGG 65
           +QTKVLQ+KDQITVVAAVSVVLSLF          LAFFWPLF STA LLV M  AF GG
Sbjct: 134 VQTKVLQNKDQITVVAAVSVVLSLF----------LAFFWPLFASTAALLVGMIAAFRGG 193

Query: 66  FQVGTEVHGER-AGEKILDYVAGRPEYAEYQYKYQ 99
           FQVGT++HG R AGE ILDYVAGRPEY +  YKY+
Sbjct: 194 FQVGTKIHGVRAAGEGILDYVAGRPEYGKNHYKYR 218

[Close]

BLAST of Sed0020326 vs. ExPASy TrEMBL
Match: A0A5D3CU44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00380 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 78/93 (83.87%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 6  IQTKVLQHKDQITVVAAVSVVLSLFAYAAPSFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          IQ K+LQHKDQITVVAAVSVVLSLF Y AP FLSILAFFWPLF STAVLLV MTAFGGGF
Sbjct: 3  IQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGF 62

Query: 66 QVGTEVHGERAGEKILDYVAGRPEYAEYQYKYQ 99
          QVG+E+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 63 QVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Sed0020326 vs. ExPASy TrEMBL
Match: A0A0A0LYI8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 78/93 (83.87%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 6  IQTKVLQHKDQITVVAAVSVVLSLFAYAAPSFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  KVLQHKDQ+TVVAAVSVVLSLF YAAP FLSILAFFWPLF STAVLLV M AFGGGF
Sbjct: 3  IHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62

Query: 66 QVGTEVHGERAGEKILDYVAGRPEYAEYQYKYQ 99
          QVGTE+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Sed0020326 vs. ExPASy TrEMBL
Match: A0A396J444 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0290401 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.5e-17
Identity = 52/97 (53.61%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 2   DIQVIQTKVLQHKDQITVVAAVSVVLSLFAYAAPSFLSILAFFWPLFLSTAVLLVAMTAF 61
           D  V+  K+L+++ QIT+   +S+V SL  Y AP FL++LA+FWPLF ST V LVA+ AF
Sbjct: 66  DTMVLSQKLLKYRYQITIAILISLVFSLLIYGAPHFLTMLAYFWPLFASTTVFLVAIIAF 125

Query: 62  GGGFQVGTEVHGERAGEKILDYVAGRPEYA-EYQYKY 98
           GG  +  TE HGE+AGE +LDYVAG+PE+  E QY +
Sbjct: 126 GGVSKFSTESHGEKAGEGLLDYVAGKPEHTQESQYNF 162

[Close]

BLAST of Sed0020326 vs. ExPASy TrEMBL
Match: A0A061GGG1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-16
Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 6   IQTKVLQHKDQITVVAAVSVVLSLFAYAAPSFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
           IQ K++Q++   T+    S +++   Y AP  L+IL +FWPLF ST V LVA+ AFGGG 
Sbjct: 92  IQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGGGS 151

Query: 66  QVGTEVHGERAGEKILDYVAGRPEYAEYQYKYQ 99
           Q+ TEVHGE+AG+ ++DYVA RPE+AE   K++
Sbjct: 152 QLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of Sed0020326 vs. ExPASy TrEMBL
Match: A0A2N9EZM9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 49/85 (57.65%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 6  IQTKVLQHKDQITVVAAVSVVLSLFAYAAPSFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  K+LQ++  +T+ A V +VLSL  YAAP  ++ILAFFWPLF STAVLL+A+ AFGG  
Sbjct: 3  IPEKLLQYRYHLTIAAIVPLVLSLLLYAAPRLVNILAFFWPLFASTAVLLMAILAFGGLS 62

Query: 66 QVGTEVHGERAGEKILDYVAGRPEY 91
          Q  TE HG +AG+ IL+YV G+PE+
Sbjct: 63 QFSTEAHGAKAGQGILEYVGGQPEH 87

[Close]

BLAST of Sed0020326 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 8.6e-13
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 6   IQTKVLQHKDQITVVAAVSVVLSLFAYAAPSFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
           IQ K+++++    V   VSV+++   YAAP  L+ILA+FWPLF STA  L     FGG  
Sbjct: 124 IQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGGFQ 183

Query: 66  QVGTEVHGERAGEKILDYVAGRPE 90
           Q+  E  GER    ++DYVAGRPE
Sbjct: 184 QLSEEATGER----LMDYVAGRPE 203

[Close]

BLAST of Sed0020326 vs. TAIR 10
Match: AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 9  KVLQHKDQITVVAAVSVVLSLFAYAAPSFLSILAFFWPLFLSTAVLLVAMTAFGGGFQV- 68
          K+L+ K QI     +S++       +P FL++L++FWPLFLSTA+ L A+  F     + 
Sbjct: 6  KLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFARTSDLP 65

Query: 69 --GTEVHGERAG-----EKILDYVAG 87
             T + GE AG     E ILDYV G
Sbjct: 66 VSSTIIPGEGAGLKVAAEGILDYVVG 91

The following BLAST results are available for this feature:

BLAST of Sed0020326 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012637.1	7.0e-41	94.90	hypothetical protein SDJN02_25389, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6573520.1	1.6e-40	93.88	hypothetical protein SDJN03_27407, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0042343.1	2.3e-31	83.87	hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK1546...	[more]
KGN64996.1	3.0e-31	83.87	hypothetical protein Csa_022896 [Cucumis sativus]	[more]
KAG6583721.1	1.1e-20	70.53	hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0020326 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0020326 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CU44	1.1e-31	83.87	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LYI8	1.4e-31	83.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1	[more]
A0A396J444	4.5e-17	53.61	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0290401 ...	[more]
A0A061GGG1	1.7e-16	50.54	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1	[more]
A0A2N9EZM9	1.1e-15	57.65	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1	[more]

BLAST of Sed0020326 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16400.1	8.6e-13	47.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G13175.1	1.3e-05	39.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125:SF7	TRANSMEMBRANE PROTEIN	coord: 6..92
None	No IPR available	PANTHER	PTHR34125	OS01G0762900 PROTEIN	coord: 6..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020326.1	Sed0020326.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane