Sed0019945 (gene) Chayote v1

Overview


Name	Sed0019945
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Charged multivesicular body protein 1
Location	LG06: 45728959 .. 45729369 (-)
RNA-Seq Expression	Sed0019945
Synteny	Sed0019945

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAACGCGGAGAAATTGTTGAGCCAGATAATGGAATTGAAGTTCACCACAAGATCCTTGCAACGCCGAGCGAAGAACTGCGAGAACGATGAGAAATCCGAGAAGCTCAAACTCAAGAAGGCCTTGGCGAAAGGAAACACGGACGGAGCATGGATCTACGCCGAGAACGCCATCCTGAAGCATACAGAGCAGATGAACTATCTCCGACTAGCGTCCCGGCTCGATACGCTGGCAAAGATGTCCCTGATCAGAAAGTCCATGGGCTCGATCGTGAAATCTTTGGAAAGTACATTGGCGACTGGTAGTTTGAAGAAGATGGCTGATGACTATGGATTGGAGGTTTCTGTTGGTCTTCCACAGGCAGCGGGTCACGTCGTTCCCGCCCGGGAGACCGAGAAATTCGACTAG

mRNA sequence

ATGGGCAACGCGGAGAAATTGTTGAGCCAGATAATGGAATTGAAGTTCACCACAAGATCCTTGCAACGCCGAGCGAAGAACTGCGAGAACGATGAGAAATCCGAGAAGCTCAAACTCAAGAAGGCCTTGGCGAAAGGAAACACGGACGGAGCATGGATCTACGCCGAGAACGCCATCCTGAAGCATACAGAGCAGATGAACTATCTCCGACTAGCGTCCCGGCTCGATACGCTGGCAAAGATGTCCCTGATCAGAAAGTCCATGGGCTCGATCGTGAAATCTTTGGAAAGTACATTGGCGACTGGTAGTTTGAAGAAGATGGCTGATGACTATGGATTGGAGGTTTCTGTTGGTCTTCCACAGGCAGCGGGTCACGTCGTTCCCGCCCGGGAGACCGAGAAATTCGACTAG

Coding sequence (CDS)

ATGGGCAACGCGGAGAAATTGTTGAGCCAGATAATGGAATTGAAGTTCACCACAAGATCCTTGCAACGCCGAGCGAAGAACTGCGAGAACGATGAGAAATCCGAGAAGCTCAAACTCAAGAAGGCCTTGGCGAAAGGAAACACGGACGGAGCATGGATCTACGCCGAGAACGCCATCCTGAAGCATACAGAGCAGATGAACTATCTCCGACTAGCGTCCCGGCTCGATACGCTGGCAAAGATGTCCCTGATCAGAAAGTCCATGGGCTCGATCGTGAAATCTTTGGAAAGTACATTGGCGACTGGTAGTTTGAAGAAGATGGCTGATGACTATGGATTGGAGGTTTCTGTTGGTCTTCCACAGGCAGCGGGTCACGTCGTTCCCGCCCGGGAGACCGAGAAATTCGACTAG

Protein sequence

MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLASRLDTLAKMSLIRKSMGSIVKSLESTLATGSLKKMADDYGLEVSVGLPQAAGHVVPARETEKFD

Homology

[Close]

BLAST of Sed0019945 vs. NCBI nr
Match: XP_022949550.1 (ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_022998305.1 ESCRT-related protein CHMP1B-like [Cucurbita maxima] >XP_023523585.1 ESCRT-related protein CHMP1B-like [Cucurbita pepo subsp. pepo] >KAG6606731.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036449.1 ESCRT-related protein CHMP1A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.6 bits (462), Expect = 2.3e-42
Identity = 110/188 (58.51%), Postives = 120/188 (63.83%), Query Frame = 0


Query: 1   MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAIL 60
           MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI 
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVKSLESTLATGSLKKM------ 120
           K TEQMNYLRLAS       RLDT AKMS I K+MGSIVKSLESTLATG+L+KM      
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 ---------------------------------------ADDYGLEVSVGLPQAAGHVVP 137
                                                  ADDYGLEVSVGLPQ AGH VP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180

[Close]

BLAST of Sed0019945 vs. NCBI nr
Match: XP_004146833.1 (ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008447589.1 PREDICTED: ESCRT-related protein CHMP1B-like [Cucumis melo] >KAA0061110.1 ESCRT-related protein CHMP1B [Cucumis melo var. makuwa])

HSP 1 Score: 181.8 bits (460), Expect = 4.0e-42
Identity = 110/188 (58.51%), Postives = 120/188 (63.83%), Query Frame = 0


Query: 1   MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAIL 60
           MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI 
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVKSLESTLATGSLKKM------ 120
           K TEQMNYLRL+S       RLDT AKMS I KSMGSIVKSLESTLATG+L+KM      
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 ---------------------------------------ADDYGLEVSVGLPQAAGHVVP 137
                                                  ADDYGLEVSVGLPQ A H VP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

[Close]

BLAST of Sed0019945 vs. NCBI nr
Match: KAE8651298.1 (hypothetical protein Csa_002473 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 4.0e-42
Identity = 110/188 (58.51%), Postives = 120/188 (63.83%), Query Frame = 0


Query: 1   MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAIL 60
           MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI 
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVKSLESTLATGSLKKM------ 120
           K TEQMNYLRL+S       RLDT AKMS I KSMGSIVKSLESTLATG+L+KM      
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 ---------------------------------------ADDYGLEVSVGLPQAAGHVVP 137
                                                  ADDYGLEVSVGLPQ A H VP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

[Close]

BLAST of Sed0019945 vs. NCBI nr
Match: XP_038878614.1 (ESCRT-related protein CHMP1B-like [Benincasa hispida])

HSP 1 Score: 181.8 bits (460), Expect = 4.0e-42
Identity = 110/188 (58.51%), Postives = 120/188 (63.83%), Query Frame = 0


Query: 1   MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAIL 60
           MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI 
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVKSLESTLATGSLKKM------ 120
           K TEQMNYLRLAS       RLDT AKMS I KSMGSIVKSLE+TLATG+L+KM      
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLETTLATGNLQKMSETMDR 120

Query: 121 ---------------------------------------ADDYGLEVSVGLPQAAGHVVP 137
                                                  ADDYGLEVSVGLPQ A H VP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

[Close]

BLAST of Sed0019945 vs. NCBI nr
Match: XP_022148096.1 (ESCRT-related protein CHMP1B-like isoform X1 [Momordica charantia])

HSP 1 Score: 181.4 bits (459), Expect = 5.2e-42
Identity = 110/188 (58.51%), Postives = 119/188 (63.30%), Query Frame = 0


Query: 1   MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAIL 60
           MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI 
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVKSLESTLATGSLKKM------ 120
           K TEQMNYLRLAS       RLDT AKMS I KSMGSIVKSLESTLATG+L+KM      
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 ---------------------------------------ADDYGLEVSVGLPQAAGHVVP 137
                                                  ADDYGLEVSVGLPQ A H VP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNTLMQQVADDYGLEVSVGLPQPAAHAVP 180

[Close]

BLAST of Sed0019945 vs. ExPASy Swiss-Prot
Match: Q9SSM4 (ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 9.5e-39
Identity = 96/188 (51.06%), Postives = 117/188 (62.23%), Query Frame = 0


Query: 1   MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAIL 60
           MGN +KL++QI +LKFT++SLQR+++ CE +EK+EKLK+KKA+ KGN DGA IYAENAI 
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVKSLESTLATGSLKKM------ 120
           K +EQMNYLRLAS       RLDT AKM+ I KSM +IVKSLES+LATG+L+KM      
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 ---------------------------------------ADDYGLEVSVGLPQAAGHVVP 137
                                                  ADDYGLEVSVGLPQ AGH +P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

[Close]

BLAST of Sed0019945 vs. ExPASy Swiss-Prot
Match: Q8LE58 (ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.6e-38
Identity = 95/188 (50.53%), Postives = 116/188 (61.70%), Query Frame = 0


Query: 1   MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAIL 60
           MGN +KL++QI ELKFT++SLQR+A+ CE +E+SEKLK+KKA+ KGN DGA IYAENAI 
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVKSLESTLATGSLKKM------ 120
           K +EQMNYLRL+S       RLDT AKM+ I KSM +IVKSLES+L TG+L+KM      
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 ---------------------------------------ADDYGLEVSVGLPQAAGHVVP 137
                                                  ADDYGLEVSVGLPQ AGH +P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

[Close]

BLAST of Sed0019945 vs. ExPASy Swiss-Prot
Match: Q84VG1 (ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.8e-37
Identity = 97/187 (51.87%), Postives = 115/187 (61.50%), Query Frame = 0


Query: 1   MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAIL 60
           MGN EKL++QI +LKFT++SLQR+A+ CE +EK +KLK+KKA+ KGN DGA IYAENAI 
Sbjct: 1   MGNPEKLMTQIFDLKFTSKSLQRQARKCEKEEKEQKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVKSLESTLATGSLKKM------ 120
           K TE MNYLRLAS       RLDT AKM +I KSM +IVKSL+S LATG+L+KM      
Sbjct: 61  KRTEHMNYLRLASRLDAVVARLDTQAKMQVIGKSMANIVKSLDSALATGNLQKMSETMDN 120

Query: 121 ---------------------------------------ADDYGLEVSVGLPQAAGHVVP 135
                                                  ADDYGLEVSVGLPQAA H +P
Sbjct: 121 FERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGLEVSVGLPQAAAHAIP 180

[Close]

BLAST of Sed0019945 vs. ExPASy Swiss-Prot
Match: O96552 (Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=chmp1 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-17
Identity = 47/106 (44.34%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 9   SQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNY 68
           +Q+ +LKFT++ L++++K  E  EK++K+KLKKA+ +GN DGA IYA+NAI +  + +NY
Sbjct: 3   NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNY 62

Query: 69  LRLASRLDTLA-------KMSLIRKSMGSIVKSLESTLATGSLKKM 108
           LRLASR+D +A       +M  +  SM +IVKS+E ++    L+K+
Sbjct: 63  LRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKI 108

[Close]

BLAST of Sed0019945 vs. ExPASy Swiss-Prot
Match: Q9CQD4 (Charged multivesicular body protein 1b-2 OS=Mus musculus OX=10090 GN=Chmp1b2 PE=2 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-16
Identity = 48/115 (41.74%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 1   MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAIL 60
           M N EK    +  LKF  + L R AK C+ +EK+EK K+KKA+ KGNT+ A I+AENAI 
Sbjct: 1   MSNMEK---HLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIR 60

Query: 61  KHTEQMNYLRLASRLDTLA-------KMSLIRKSMGSIVKSLESTLATGSLKKMA 109
           +  + +N+LR+++R+D +A        M  + KSM  +VKS+++TL + +L+K++
Sbjct: 61  QKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKIS 112

[Close]

BLAST of Sed0019945 vs. ExPASy TrEMBL
Match: A0A6J1KC50 (ESCRT-related protein CHMP1B-like OS=Cucurbita maxima OX=3661 GN=LOC111492980 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-42
Identity = 110/188 (58.51%), Postives = 120/188 (63.83%), Query Frame = 0


Query: 1   MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAIL 60
           MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI 
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVKSLESTLATGSLKKM------ 120
           K TEQMNYLRLAS       RLDT AKMS I K+MGSIVKSLESTLATG+L+KM      
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 ---------------------------------------ADDYGLEVSVGLPQAAGHVVP 137
                                                  ADDYGLEVSVGLPQ AGH VP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180

[Close]

BLAST of Sed0019945 vs. ExPASy TrEMBL
Match: A0A6J1GD16 (ESCRT-related protein CHMP1B-like OS=Cucurbita moschata OX=3662 GN=LOC111452864 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.1e-42
Identity = 110/188 (58.51%), Postives = 120/188 (63.83%), Query Frame = 0


Query: 1   MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAIL 60
           MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI 
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVKSLESTLATGSLKKM------ 120
           K TEQMNYLRLAS       RLDT AKMS I K+MGSIVKSLESTLATG+L+KM      
Sbjct: 61  KRTEQMNYLRLASRLDAVVARLDTQAKMSTINKAMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 ---------------------------------------ADDYGLEVSVGLPQAAGHVVP 137
                                                  ADDYGLEVSVGLPQ AGH VP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAVP 180

[Close]

BLAST of Sed0019945 vs. ExPASy TrEMBL
Match: A0A5A7V1A1 (ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold348G00240 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.9e-42
Identity = 110/188 (58.51%), Postives = 120/188 (63.83%), Query Frame = 0


Query: 1   MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAIL 60
           MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI 
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVKSLESTLATGSLKKM------ 120
           K TEQMNYLRL+S       RLDT AKMS I KSMGSIVKSLESTLATG+L+KM      
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 ---------------------------------------ADDYGLEVSVGLPQAAGHVVP 137
                                                  ADDYGLEVSVGLPQ A H VP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

[Close]

BLAST of Sed0019945 vs. ExPASy TrEMBL
Match: A0A0A0LIG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G849970 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.9e-42
Identity = 110/188 (58.51%), Postives = 120/188 (63.83%), Query Frame = 0


Query: 1   MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAIL 60
           MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI 
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVKSLESTLATGSLKKM------ 120
           K TEQMNYLRL+S       RLDT AKMS I KSMGSIVKSLESTLATG+L+KM      
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 ---------------------------------------ADDYGLEVSVGLPQAAGHVVP 137
                                                  ADDYGLEVSVGLPQ A H VP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

[Close]

BLAST of Sed0019945 vs. ExPASy TrEMBL
Match: A0A1S3BIE8 (ESCRT-related protein CHMP1B-like OS=Cucumis melo OX=3656 GN=LOC103490004 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.9e-42
Identity = 110/188 (58.51%), Postives = 120/188 (63.83%), Query Frame = 0


Query: 1   MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAIL 60
           MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI 
Sbjct: 1   MGNTEKLLNQIMELKFTAKSLQRQARKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIR 60

Query: 61  KHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVKSLESTLATGSLKKM------ 120
           K TEQMNYLRL+S       RLDT AKMS I KSMGSIVKSLESTLATG+L+KM      
Sbjct: 61  KRTEQMNYLRLSSRLDAVVARLDTQAKMSTINKSMGSIVKSLESTLATGNLQKMSETMDQ 120

Query: 121 ---------------------------------------ADDYGLEVSVGLPQAAGHVVP 137
                                                  ADDYGLEVSVGLPQ A H VP
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVP 180

[Close]

BLAST of Sed0019945 vs. TAIR 10
Match: AT1G73030.1 (SNF7 family protein )

HSP 1 Score: 161.0 bits (406), Expect = 6.7e-40
Identity = 96/188 (51.06%), Postives = 117/188 (62.23%), Query Frame = 0


Query: 1   MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAIL 60
           MGN +KL++QI +LKFT++SLQR+++ CE +EK+EKLK+KKA+ KGN DGA IYAENAI 
Sbjct: 1   MGNTDKLMNQIFDLKFTSKSLQRQSRKCEKEEKAEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVKSLESTLATGSLKKM------ 120
           K +EQMNYLRLAS       RLDT AKM+ I KSM +IVKSLES+LATG+L+KM      
Sbjct: 61  KRSEQMNYLRLASRLDAVVARLDTQAKMTTITKSMTNIVKSLESSLATGNLQKMSETMDS 120

Query: 121 ---------------------------------------ADDYGLEVSVGLPQAAGHVVP 137
                                                  ADDYGLEVSVGLPQ AGH +P
Sbjct: 121 FEKQFVNMEVQAEFMENAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

[Close]

BLAST of Sed0019945 vs. TAIR 10
Match: AT1G17730.1 (vacuolar protein sorting 46.1 )

HSP 1 Score: 159.1 bits (401), Expect = 2.6e-39
Identity = 95/188 (50.53%), Postives = 116/188 (61.70%), Query Frame = 0


Query: 1   MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAIL 60
           MGN +KL++QI ELKFT++SLQR+A+ CE +E+SEKLK+KKA+ KGN DGA IYAENAI 
Sbjct: 1   MGNTDKLMNQIFELKFTSKSLQRQARKCEKEERSEKLKVKKAIEKGNMDGARIYAENAIR 60

Query: 61  KHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVKSLESTLATGSLKKM------ 120
           K +EQMNYLRL+S       RLDT AKM+ I KSM +IVKSLES+L TG+L+KM      
Sbjct: 61  KRSEQMNYLRLSSRLDAVVARLDTQAKMATITKSMTNIVKSLESSLTTGNLQKMSETMDS 120

Query: 121 ---------------------------------------ADDYGLEVSVGLPQAAGHVVP 137
                                                  ADDYGLEVSVGLPQ AGH +P
Sbjct: 121 FEKQFVNMEVQAEFMDNAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAGHAIP 180

The following BLAST results are available for this feature:

BLAST of Sed0019945 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949550.1	2.3e-42	58.51	ESCRT-related protein CHMP1B-like [Cucurbita moschata] >XP_022998305.1 ESCRT-rel...	[more]
XP_004146833.1	4.0e-42	58.51	ESCRT-related protein CHMP1B [Cucumis sativus] >XP_008447589.1 PREDICTED: ESCRT-...	[more]
KAE8651298.1	4.0e-42	58.51	hypothetical protein Csa_002473 [Cucumis sativus]	[more]
XP_038878614.1	4.0e-42	58.51	ESCRT-related protein CHMP1B-like [Benincasa hispida]	[more]
XP_022148096.1	5.2e-42	58.51	ESCRT-related protein CHMP1B-like isoform X1 [Momordica charantia]	[more]

BLAST of Sed0019945 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSM4	9.5e-39	51.06	ESCRT-related protein CHMP1B OS=Arabidopsis thaliana OX=3702 GN=CHMP1B PE=1 SV=1	[more]
Q8LE58	3.6e-38	50.53	ESCRT-related protein CHMP1A OS=Arabidopsis thaliana OX=3702 GN=CHMP1A PE=1 SV=1	[more]
Q84VG1	1.8e-37	51.87	ESCRT-related protein CHMP1 OS=Oryza sativa subsp. japonica OX=39947 GN=CHMP1 PE...	[more]
O96552	2.7e-17	44.34	Charged multivesicular body protein 1 OS=Dictyostelium discoideum OX=44689 GN=ch...	[more]
Q9CQD4	3.0e-16	41.74	Charged multivesicular body protein 1b-2 OS=Mus musculus OX=10090 GN=Chmp1b2 PE=...	[more]

BLAST of Sed0019945 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KC50	1.1e-42	58.51	ESCRT-related protein CHMP1B-like OS=Cucurbita maxima OX=3661 GN=LOC111492980 PE...	[more]
A0A6J1GD16	1.1e-42	58.51	ESCRT-related protein CHMP1B-like OS=Cucurbita moschata OX=3662 GN=LOC111452864 ...	[more]
A0A5A7V1A1	1.9e-42	58.51	ESCRT-related protein CHMP1B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A0A0LIG8	1.9e-42	58.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G849970 PE=4 SV=1	[more]
A0A1S3BIE8	1.9e-42	58.51	ESCRT-related protein CHMP1B-like OS=Cucumis melo OX=3656 GN=LOC103490004 PE=4 S...	[more]

BLAST of Sed0019945 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73030.1	6.7e-40	51.06	SNF7 family protein	[more]
AT1G17730.1	2.6e-39	50.53	vacuolar protein sorting 46.1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.1230		coord: 3..115 e-value: 9.1E-12 score: 47.1
None	No IPR available	PANTHER	PTHR10476:SF47	ESCRT-RELATED PROTEIN CHMP1-RELATED	coord: 5..108
None	No IPR available	PANTHER	PTHR10476:SF47	ESCRT-RELATED PROTEIN CHMP1-RELATED	coord: 105..136
None	No IPR available	PANTHER	PTHR10476	CHARGED MULTIVESICULAR BODY PROTEIN	coord: 5..108
None	No IPR available	PANTHER	PTHR10476	CHARGED MULTIVESICULAR BODY PROTEIN	coord: 105..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019945.1	Sed0019945.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007034	vacuolar transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005768	endosome