Sed0018916 (gene) Chayote v1

Overview


Name	Sed0018916
Type	gene
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S4
Location	LG13: 6717071 .. 6720414 (+)
RNA-Seq Expression	Sed0018916
Synteny	Sed0018916

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATTTATAGTCAATCTCTACACATTGAAATTCTATAACTTTGTTTTTGTTATTAAAGATGATTAAAAAATGAATAAAAATATGAAAATTTAACGTCATATATTACGAGATAATATATATCTATTTATTTTAATTTTTAAAATTCAAATATATTTAAATAAACATTTGATATAATAATAGTATAATTATTATAATTATATATTGATATATTAAAATAATAATATTATAGAAAATATATCAAACATAAAATAAGTAAATATATATAAATAAAAAGATGAAAAAATTTTAAATAAAAAAAAAAAAGAGGAGAGAGAAGATGAGATGAGGTGAAGAACACCTTGGACCAAACAAGGTGTTGGACTTCACACCTCACCTCATCTCACCTCCTCTTAAAACAAACACTCCCCAAAAGCTTGATTTTGTAAAAATCTTGCACCGTATTTTATAAATAACGTTTCTAAATATGAGAAATTCTTAAAAATTCAAGAAACAGAACCAGAGAAACTTCACTTTGGAGAGAAACTCCACTTTGGAGTTTCTCATTTTGAAGCCAAATTCTAGAAATGTTTCTTTAAAATTTTGAGAACAAGAAATAGGAATGATTACCAAACAAGTCTGTTTCTAAAAAAAAAGAAACAGAAACAAGAAACATGAACGTTACCAAACCGATCTTAAATTGCTCCAATTGCAGAATGTTTTTTTTTACACTCTCAACTCCTTCAAATTTATGGGAAATAAACCAGCGGTTGGATTAATGAGATAATCTGGATTGAAATAAACCATATAAACCGATTGGAACCGATCTATATAAGCAGTCATAAGAAAACCCTAAATCTTTTCGATCGAAGCAGCGCCGTTGTTTCCGCCTTATTTGCTCTTCCAGAACCCCAAACACCATTTGCAACTTCCGGCCACAAGCTCCCTTACCATGGTCAGTGATTGCTTCTAAGAATCCTAATTTTTTTTTTTTTTTTTTTTCATGTGTTCGTTCTCATTATTTGTTGAAAAGTTCAATGCAGATTCCGATTGTATCAGTATTTGCAATGTTTTGATAAGCTCGAGATTTGAATATGCTATTCTTAATTTGTTCCGAGAAATTTTATTGAATTCTTTGAGAATTTATGTATCTAAACAATGGCACTTTTGAGCTCTGAACTGCGAAATTGTACCTCCATAGTGTTGGTCACTAGCTAAGTTTCGATTTATTTTTGTTCATTTCTTTTTTCAAATCGAAAGAACAAAATTTTCCAGTCCTTCCAACATTTTGTAACCCCTAAAGGATTTTATTACTCGACATTTTCTTCAATATGTTCATAAAAAGGTATTCTTGGTTTTGGCCTATGCTATCTGGATCTATGTTTGCTTTCTTGTGTGTTGCATTTTGGTTTTTGGAATATTTAATATTGGATTTAATGGCTGTGTCTATTACAGGCTCGGGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCAAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGTGAGTCAAATTTATAGTTTTAAGTTCTGTTTACATTTTAGAGGAGTTCAACACTGAACTTTTTTTCATGTATATTGGATTTTTTTGTAGGCTCCCAAACCTTCCTCTGGACCACATAAATCAAGGGAATGCCTCCCGTTGATCCTTATTCTCCGAAACCGATTGAAGTATGCTCTCACATATCGTGAGGTGATTGCGATCTTAATGCAAAGACATGTTCTTGTAGATGGGAAAGTGAGAACTGACAAGACATACCCGGCTGGGTTTATGGGTATACCCTTTTTTTCTTTCTTTAATTTTAATTTTATTCTAATAATTGAATGAAAAGGCCATTCTTTTTTTTTGCTGAATTTTATTTTAGGCATTGCTTTCCTAGACAAATTGTAATGTATCATCATCTGTATGTGAATGAATGAGACAGATTATCTTTCTGTGAGAAATCTGATTTGAAGTGAATGGGTAATGGAGCATGTACTAAAGTGTCAGGTTTATGAATGAATTTATTTTTTGGGTGTGACCGCAATCTGTTATATTCTAGTTTCATATGGAATTATTCTTATAACTATTAAATAGCAACAGTTGTCTATTGGTCAAAAGAGCCGTGTAGAACTAAGAGGTTATGTGTTTGATCTATGATAGACACCTACTAAGAATTAATTTCTTATGAGTTTCATTGACAACAAAATGTTGTAAGGTTAGATGGTTGTCTCATAAGAATAGCCAATGTGGGTAAGCTGGATACTCATGAACATAACTAATGCATATTCTAGATTATTTGAGTAGAATTAGCCCCTTTCCTATTTAGATTATCTAGAACGTGCCCAAATTTCTTTTTGTGGAGTAAAATATGTAGATGTGAACAATAATTATGGAGATAGCTTTATTCATATTTCATCATAATTTTGCTTTGGAGATTTTGAGGAAGATAGTCCATAAATATGTACCTTATCATATAATCTGATGGTTAAATTTTAGATGTCCCTGTAGATTAGGTATCTATTGGAAAAGTGCCTATTGGTTGCATTCGTTTGTTTTATACTGTTATTATTTTATGTCCTCGGTAAACACGACACTTTGTTTATCCTTGTACTCTTGTAGATGTTGTATCAATCCCCAAAACGAATGAGAATTTCCGGCTTCTTTATGACACCAAAGGTCGATTCCGTCTTCACTCTGTGAGGGATGAGGAATCTAAGGTGAGTTACTTATTCTTTTTGGTATCAAATTTGATTTTCTATTTTTTTTTTTTCATAAATGTATTTCTGTCTTCTACCCTTTCCTCCTTACCTGTTAGAGTGAGTAGATATCCTTTTCAGCGACTGATAGTCTTACTATTATTGTAATTTGTCCATTTAAATATTGGATGATTTACATTGATTTACATGTACCTTATACAGTACAAACTCTGCAAAGTCCGCTCTGTGCAATTTGGGCAGAAGGGCATTCCATATCTGAACACCTACGATGGCCGTACTATTCGGTACCCTGATCCTCTCATCAAGGCCAATGACACAATCAAACTCGATCTTGACTCCAACAAGATTGCTGATTTCATCAAGTTTGATGTAGGTAATGTAGTCATGGTTACAGGTGGAAGGAATCGTGGAAGAGTTGGCGTAATTAAGAACAGGGAGAAGCATAAGGGAAGCTTTGAGACCATCCACATTCAGGATTCCACTGGCCATGAATTCGCCACTCGTCTCGGCAACGTCTTTACCATTGGTAAGGGTACCAAGCCATGGGTATCCCTTCCTAAGGGCAAGGGTATTAAATTATCCATCATTGAGGAGGCCAGGAAGAGGCTTGCGAGTCAGACAGCAGTTTCCGCGTAG

mRNA sequence

ATGATATTTATAGTCAATCTCTACACATTGAAATTCTATAACTTTGTTTTTGCTCGGGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCAAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGCTCCCAAACCTTCCTCTGGACCACATAAATCAAGGGAATGCCTCCCGTTGATCCTTATTCTCCGAAACCGATTGAAGTATGCTCTCACATATCGTGAGGTGATTGCGATCTTAATGCAAAGACATGTTCTTGTAGATGGGAAAGTGAGAACTGACAAGACATACCCGGCTGGGTTTATGGATGTTGTATCAATCCCCAAAACGAATGAGAATTTCCGGCTTCTTTATGACACCAAAGGTCGATTCCGTCTTCACTCTGTGAGGGATGAGGAATCTAAGTACAAACTCTGCAAAGTCCGCTCTGTGCAATTTGGGCAGAAGGGCATTCCATATCTGAACACCTACGATGGCCGTACTATTCGGTACCCTGATCCTCTCATCAAGGCCAATGACACAATCAAACTCGATCTTGACTCCAACAAGATTGCTGATTTCATCAAGTTTGATGTAGGTAATGTAGTCATGGTTACAGGTGGAAGGAATCGTGGAAGAGTTGGCGTAATTAAGAACAGGGAGAAGCATAAGGGAAGCTTTGAGACCATCCACATTCAGGATTCCACTGGCCATGAATTCGCCACTCGTCTCGGCAACGTCTTTACCATTGGTAAGGGTACCAAGCCATGGGTATCCCTTCCTAAGGGCAAGGGTATTAAATTATCCATCATTGAGGAGGCCAGGAAGAGGCTTGCGAGTCAGACAGCAGTTTCCGCGTAG

Coding sequence (CDS)

ATGATATTTATAGTCAATCTCTACACATTGAAATTCTATAACTTTGTTTTTGCTCGGGGATTGAAGAAGCATTTGAAGAGGCTCAATGCTCCAAAGCATTGGATGCTTGACAAACTTGGTGGTGCATTTGCTCCCAAACCTTCCTCTGGACCACATAAATCAAGGGAATGCCTCCCGTTGATCCTTATTCTCCGAAACCGATTGAAGTATGCTCTCACATATCGTGAGGTGATTGCGATCTTAATGCAAAGACATGTTCTTGTAGATGGGAAAGTGAGAACTGACAAGACATACCCGGCTGGGTTTATGGATGTTGTATCAATCCCCAAAACGAATGAGAATTTCCGGCTTCTTTATGACACCAAAGGTCGATTCCGTCTTCACTCTGTGAGGGATGAGGAATCTAAGTACAAACTCTGCAAAGTCCGCTCTGTGCAATTTGGGCAGAAGGGCATTCCATATCTGAACACCTACGATGGCCGTACTATTCGGTACCCTGATCCTCTCATCAAGGCCAATGACACAATCAAACTCGATCTTGACTCCAACAAGATTGCTGATTTCATCAAGTTTGATGTAGGTAATGTAGTCATGGTTACAGGTGGAAGGAATCGTGGAAGAGTTGGCGTAATTAAGAACAGGGAGAAGCATAAGGGAAGCTTTGAGACCATCCACATTCAGGATTCCACTGGCCATGAATTCGCCACTCGTCTCGGCAACGTCTTTACCATTGGTAAGGGTACCAAGCCATGGGTATCCCTTCCTAAGGGCAAGGGTATTAAATTATCCATCATTGAGGAGGCCAGGAAGAGGCTTGCGAGTCAGACAGCAGTTTCCGCGTAG

Protein sequence

MIFIVNLYTLKFYNFVFARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKYKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLASQTAVSA

Homology

[Close]

BLAST of Sed0018916 vs. NCBI nr
Match: XP_022132117.1 (40S ribosomal protein S4-3 [Momordica charantia])

HSP 1 Score: 527.3 bits (1357), Expect = 7.9e-146
Identity = 259/263 (98.48%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEE+KY
Sbjct: 62  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 181

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNVFTIGKGTKPWVSLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKG 241

Query: 258 KGIKLSIIEEARKRLASQTAVSA 281
           KGIKLSIIEEARKRLASQ AV+A
Sbjct: 242 KGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Sed0018916 vs. NCBI nr
Match: XP_038899765.1 (40S ribosomal protein S4-3-like [Benincasa hispida])

HSP 1 Score: 525.8 bits (1353), Expect = 2.3e-145
Identity = 258/263 (98.10%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           IAILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEE+KY
Sbjct: 62  IAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 181

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNVFTIGKGTKPWVSLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKG 241

Query: 258 KGIKLSIIEEARKRLASQTAVSA 281
           KGIKLSIIEEARKRLASQ AV+A
Sbjct: 242 KGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Sed0018916 vs. NCBI nr
Match: XP_022146851.1 (40S ribosomal protein S4-3-like [Momordica charantia])

HSP 1 Score: 524.6 bits (1350), Expect = 5.1e-145
Identity = 257/263 (97.72%), Postives = 261/263 (99.24%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           IAILMQRHVLVD KVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEE+KY
Sbjct: 62  IAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 181

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNVFTIGKGTKPWVSLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKG 241

Query: 258 KGIKLSIIEEARKRLASQTAVSA 281
           KG+KLSIIEEARKRLASQ AV+A
Sbjct: 242 KGVKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Sed0018916 vs. NCBI nr
Match: XP_038900121.1 (40S ribosomal protein S4-3 [Benincasa hispida])

HSP 1 Score: 524.2 bits (1349), Expect = 6.7e-145
Identity = 257/263 (97.72%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           IAILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEE+KY
Sbjct: 62  IAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVV 181

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNVFTIGKGTKPWVSLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKG 241

Query: 258 KGIKLSIIEEARKRLASQTAVSA 281
           KGIKLSIIEEARKRLASQ AV+A
Sbjct: 242 KGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Sed0018916 vs. NCBI nr
Match: XP_022996364.1 (40S ribosomal protein S4-3-like [Cucurbita maxima] >KAG6599974.1 40S ribosomal protein S4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030653.1 40S ribosomal protein S4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 523.1 bits (1346), Expect = 1.5e-144
Identity = 256/263 (97.34%), Postives = 261/263 (99.24%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEESK+
Sbjct: 62  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKF 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 181

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NVFTIGKGTKPWVSLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPKG 241

Query: 258 KGIKLSIIEEARKRLASQTAVSA 281
           KGIKLSIIEEARKRLASQTA +A
Sbjct: 242 KGIKLSIIEEARKRLASQTAATA 264

[Close]

BLAST of Sed0018916 vs. ExPASy Swiss-Prot
Match: P46300 (40S ribosomal protein S4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 8.5e-143
Identity = 244/263 (92.78%), Postives = 258/263 (98.10%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           I+ILMQR V+VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEESK+
Sbjct: 62  ISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKF 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVV 181

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFET+HIQDS GHEFATRLGNVFT+GKGTKPWVSLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKG 241

Query: 258 KGIKLSIIEEARKRLASQTAVSA 281
           KGIKL+IIE+ARKRLA+Q+A  A
Sbjct: 242 KGIKLTIIEDARKRLAAQSATPA 264

[Close]

BLAST of Sed0018916 vs. ExPASy Swiss-Prot
Match: Q8VYK6 (40S ribosomal protein S4-3 OS=Arabidopsis thaliana OX=3702 GN=RPS4D PE=2 SV=2)

HSP 1 Score: 506.5 bits (1303), Expect = 1.9e-142
Identity = 242/260 (93.08%), Postives = 256/260 (98.46%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           I+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEE+K+
Sbjct: 62  ISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKF 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL++NKI +FIKFDVGNVV
Sbjct: 122 KLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVV 181

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNV+TIGKGTKPWVSLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKG 241

Query: 258 KGIKLSIIEEARKRLASQTA 278
           KGIKL+IIEEARKRLASQ A
Sbjct: 242 KGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Sed0018916 vs. ExPASy Swiss-Prot
Match: P49204 (40S ribosomal protein S4-2 OS=Arabidopsis thaliana OX=3702 GN=RPS4B PE=2 SV=4)

HSP 1 Score: 506.1 bits (1302), Expect = 2.5e-142
Identity = 242/260 (93.08%), Postives = 255/260 (98.08%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           I+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEE+K+
Sbjct: 62  ISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKF 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVV
Sbjct: 122 KLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNV+TIGKGTKPWVSLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKG 241

Query: 258 KGIKLSIIEEARKRLASQTA 278
           KGIKL+IIEEARKRLASQ A
Sbjct: 242 KGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Sed0018916 vs. ExPASy Swiss-Prot
Match: Q93VH9 (40S ribosomal protein S4-1 OS=Arabidopsis thaliana OX=3702 GN=RPS4A PE=2 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 1.2e-141
Identity = 240/260 (92.31%), Postives = 255/260 (98.08%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           I+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEE+K+
Sbjct: 62  ISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKF 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVV
Sbjct: 122 KLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNV+TIGKGTKPWVSLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKG 241

Query: 258 KGIKLSIIEEARKRLASQTA 278
           KGIKL+IIEEARKRL++Q A
Sbjct: 242 KGIKLTIIEEARKRLSAQQA 261

[Close]

BLAST of Sed0018916 vs. ExPASy Swiss-Prot
Match: P46299 (40S ribosomal protein S4 OS=Gossypium hirsutum OX=3635 GN=RPS4 PE=2 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 5.2e-140
Identity = 241/260 (92.69%), Postives = 253/260 (97.31%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           IAILMQRHV+VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRF LH++  +E+K+
Sbjct: 62  IAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKF 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKI DFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVV 181

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFETIH+QD+ GHEFATRLGNVFTIGKGTKPWVSLPK 
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKR 241

Query: 258 KGIKLSIIEEARKRLASQTA 278
           KGIKLSIIEEARKRLA+Q A
Sbjct: 242 KGIKLSIIEEARKRLAAQNA 261

[Close]

BLAST of Sed0018916 vs. ExPASy TrEMBL
Match: A0A6J1BSY6 (40S ribosomal protein S4 OS=Momordica charantia OX=3673 GN=LOC111005064 PE=3 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 3.8e-146
Identity = 259/263 (98.48%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEE+KY
Sbjct: 62  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 181

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNVFTIGKGTKPWVSLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKG 241

Query: 258 KGIKLSIIEEARKRLASQTAVSA 281
           KGIKLSIIEEARKRLASQ AV+A
Sbjct: 242 KGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Sed0018916 vs. ExPASy TrEMBL
Match: A0A6J1D0L7 (40S ribosomal protein S4 OS=Momordica charantia OX=3673 GN=LOC111015952 PE=3 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 2.5e-145
Identity = 257/263 (97.72%), Postives = 261/263 (99.24%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           IAILMQRHVLVD KVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEE+KY
Sbjct: 62  IAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEEAKY 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 181

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNVFTIGKGTKPWVSLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKG 241

Query: 258 KGIKLSIIEEARKRLASQTAVSA 281
           KG+KLSIIEEARKRLASQ AV+A
Sbjct: 242 KGVKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Sed0018916 vs. ExPASy TrEMBL
Match: A0A6J1K8I3 (40S ribosomal protein S4 OS=Cucurbita maxima OX=3661 GN=LOC111491616 PE=3 SV=1)

HSP 1 Score: 523.1 bits (1346), Expect = 7.2e-145
Identity = 256/263 (97.34%), Postives = 261/263 (99.24%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RDEESK+
Sbjct: 62  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKF 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 181

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFETIH+QD+TGHEFATRL NVFTIGKGTKPWVSLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLCNVFTIGKGTKPWVSLPKG 241

Query: 258 KGIKLSIIEEARKRLASQTAVSA 281
           KGIKLSIIEEARKRLASQTA +A
Sbjct: 242 KGIKLSIIEEARKRLASQTAATA 264

[Close]

BLAST of Sed0018916 vs. ExPASy TrEMBL
Match: A0A5A7V1R9 (40S ribosomal protein S4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00160 PE=3 SV=1)

HSP 1 Score: 522.3 bits (1344), Expect = 1.2e-144
Identity = 256/263 (97.34%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 16  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 75

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           IAILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSVRDEE+KY
Sbjct: 76  IAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAKY 135

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVV
Sbjct: 136 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVV 195

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNVFTIGKGTKPWVSLPKG
Sbjct: 196 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTIGKGTKPWVSLPKG 255

Query: 258 KGIKLSIIEEARKRLASQTAVSA 281
           KGIKLSIIEEARKRLASQ AV+A
Sbjct: 256 KGIKLSIIEEARKRLASQAAVTA 278

[Close]

BLAST of Sed0018916 vs. ExPASy TrEMBL
Match: A0A0A0K4K7 (40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G282410 PE=3 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 1.6e-144
Identity = 255/263 (96.96%), Postives = 262/263 (99.62%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           IAILMQRHVLVDGKVRTDKT+PAGFMDVVSIPKT+ENFRLLYDTKGRFRLHSVRDEE+KY
Sbjct: 62  IAILMQRHVLVDGKVRTDKTFPAGFMDVVSIPKTSENFRLLYDTKGRFRLHSVRDEEAKY 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDL+SNKIADFIKFDVGNVV
Sbjct: 122 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIADFIKFDVGNVV 181

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFETIHIQD+TGHEFATRLGNVFT+GKGTKPWVSLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDATGHEFATRLGNVFTVGKGTKPWVSLPKG 241

Query: 258 KGIKLSIIEEARKRLASQTAVSA 281
           KGIKLSIIEEARKRLASQ AV+A
Sbjct: 242 KGIKLSIIEEARKRLASQAAVTA 264

[Close]

BLAST of Sed0018916 vs. TAIR 10
Match: AT5G58420.1 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 506.5 bits (1303), Expect = 1.3e-143
Identity = 242/260 (93.08%), Postives = 256/260 (98.46%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           I+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEE+K+
Sbjct: 62  ISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKF 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL++NKI +FIKFDVGNVV
Sbjct: 122 KLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVV 181

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNV+TIGKGTKPWVSLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKG 241

Query: 258 KGIKLSIIEEARKRLASQTA 278
           KGIKL+IIEEARKRLASQ A
Sbjct: 242 KGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Sed0018916 vs. TAIR 10
Match: AT5G07090.1 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 506.1 bits (1302), Expect = 1.8e-143
Identity = 242/260 (93.08%), Postives = 255/260 (98.08%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           I+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEE+K+
Sbjct: 62  ISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKF 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVV
Sbjct: 122 KLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNV+TIGKGTKPWVSLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKG 241

Query: 258 KGIKLSIIEEARKRLASQTA 278
           KGIKL+IIEEARKRLASQ A
Sbjct: 242 KGIKLTIIEEARKRLASQQA 261

[Close]

BLAST of Sed0018916 vs. TAIR 10
Match: AT2G17360.1 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 503.8 bits (1296), Expect = 8.7e-143
Identity = 240/260 (92.31%), Postives = 255/260 (98.08%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           I+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEE+K+
Sbjct: 62  ISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKF 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVV
Sbjct: 122 KLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVV 181

Query: 198 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKG 257
           MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNV+TIGKGTKPWVSLPKG
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKG 241

Query: 258 KGIKLSIIEEARKRLASQTA 278
           KGIKL+IIEEARKRL++Q A
Sbjct: 242 KGIKLTIIEEARKRLSAQQA 261

[Close]

BLAST of Sed0018916 vs. TAIR 10
Match: AT5G07090.2 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 468.8 bits (1205), Expect = 3.1e-132
Identity = 225/243 (92.59%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 35  MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 94
           MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VDGKVRT
Sbjct: 1   MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 60

Query: 95  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKYKLCKVRSVQFGQKGIPY 154
           DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEE+K+KLCKVRS+QFGQKGIPY
Sbjct: 61  DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 120

Query: 155 LNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVVMVTGGRNRGRVGVIKNR 214
           LNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVGNVVMVTGGRNRGRVGVIKNR
Sbjct: 121 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 180

Query: 215 EKHKGSFETIHIQDSTGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKRLAS 274
           EKHKGSFETIHIQDSTGHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+IIEEARKRLAS
Sbjct: 181 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLAS 240

Query: 275 QTA 278
           Q A
Sbjct: 241 QQA 243

[Close]

BLAST of Sed0018916 vs. TAIR 10
Match: AT2G17360.2 (Ribosomal protein S4 (RPS4A) family protein )

HSP 1 Score: 348.6 bits (893), Expect = 4.7e-96
Identity = 163/180 (90.56%), Postives = 174/180 (96.67%), Query Frame = 0


Query: 18  ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV 77
           ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREV
Sbjct: 2   ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREV 61

Query: 78  IAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDEESKY 137
           I+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEE+K+
Sbjct: 62  ISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKF 121

Query: 138 KLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIADFIKFDVGNVV 197
           KLCKVRS+QFGQKGIPYLNTYDGRTIRYPDPLIK NDTIKLDL+ NKI +FIKFDVG  V
Sbjct: 122 KLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGKCV 181

The following BLAST results are available for this feature:

BLAST of Sed0018916 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132117.1	7.9e-146	98.48	40S ribosomal protein S4-3 [Momordica charantia]	[more]
XP_038899765.1	2.3e-145	98.10	40S ribosomal protein S4-3-like [Benincasa hispida]	[more]
XP_022146851.1	5.1e-145	97.72	40S ribosomal protein S4-3-like [Momordica charantia]	[more]
XP_038900121.1	6.7e-145	97.72	40S ribosomal protein S4-3 [Benincasa hispida]	[more]
XP_022996364.1	1.5e-144	97.34	40S ribosomal protein S4-3-like [Cucurbita maxima] >KAG6599974.1 40S ribosomal p...	[more]

BLAST of Sed0018916 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46300	8.5e-143	92.78	40S ribosomal protein S4 OS=Solanum tuberosum OX=4113 GN=RPS4 PE=2 SV=1	[more]
Q8VYK6	1.9e-142	93.08	40S ribosomal protein S4-3 OS=Arabidopsis thaliana OX=3702 GN=RPS4D PE=2 SV=2	[more]
P49204	2.5e-142	93.08	40S ribosomal protein S4-2 OS=Arabidopsis thaliana OX=3702 GN=RPS4B PE=2 SV=4	[more]
Q93VH9	1.2e-141	92.31	40S ribosomal protein S4-1 OS=Arabidopsis thaliana OX=3702 GN=RPS4A PE=2 SV=1	[more]
P46299	5.2e-140	92.69	40S ribosomal protein S4 OS=Gossypium hirsutum OX=3635 GN=RPS4 PE=2 SV=1	[more]

BLAST of Sed0018916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSY6	3.8e-146	98.48	40S ribosomal protein S4 OS=Momordica charantia OX=3673 GN=LOC111005064 PE=3 SV=...	[more]
A0A6J1D0L7	2.5e-145	97.72	40S ribosomal protein S4 OS=Momordica charantia OX=3673 GN=LOC111015952 PE=3 SV=...	[more]
A0A6J1K8I3	7.2e-145	97.34	40S ribosomal protein S4 OS=Cucurbita maxima OX=3661 GN=LOC111491616 PE=3 SV=1	[more]
A0A5A7V1R9	1.2e-144	97.34	40S ribosomal protein S4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0K4K7	1.6e-144	96.96	40S ribosomal protein S4 OS=Cucumis sativus OX=3659 GN=Csa_7G282410 PE=3 SV=1	[more]

BLAST of Sed0018916 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58420.1	1.3e-143	93.08	Ribosomal protein S4 (RPS4A) family protein	[more]
AT5G07090.1	1.8e-143	93.08	Ribosomal protein S4 (RPS4A) family protein	[more]
AT2G17360.1	8.7e-143	92.31	Ribosomal protein S4 (RPS4A) family protein	[more]
AT5G07090.2	3.1e-132	92.59	Ribosomal protein S4 (RPS4A) family protein	[more]
AT2G17360.2	4.7e-96	90.56	Ribosomal protein S4 (RPS4A) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 58..122 e-value: 2.9E-5 score: 33.5
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 63..106 e-value: 3.8E-7 score: 29.7
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 67..128 e-value: 5.06435E-6 score: 41.4662
IPR005824	KOW	SMART	SM00739	kow_9	coord: 190..217 e-value: 7.7E-4 score: 28.8
IPR005824	KOW	PFAM	PF00467	KOW	coord: 193..226 e-value: 1.5E-6 score: 27.9
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 191..261 e-value: 3.3E-39 score: 134.6
IPR000876	Ribosomal protein S4e	PIRSF	PIRSF002116	RPS4a_RPS4e	coord: 17..257 e-value: 3.2E-97 score: 322.4
IPR000876	Ribosomal protein S4e	PANTHER	PTHR11581	30S/40S RIBOSOMAL PROTEIN S4	coord: 237..280 coord: 17..236
IPR000876	Ribosomal protein S4e	HAMAP	MF_00485	Ribosomal_S4e	coord: 23..254 score: 36.349121
IPR032277	40S ribosomal protein S4, C-terminal domain	PFAM	PF16121	40S_S4_C	coord: 228..274 e-value: 9.5E-26 score: 89.2
IPR013845	Ribosomal protein S4e, central region	PFAM	PF00900	Ribosomal_S4e	coord: 111..185 e-value: 7.1E-35 score: 118.7
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 17..133 e-value: 7.7E-61 score: 205.2
IPR038237	Ribosomal protein S4e, central domain superfamily	GENE3D	2.40.50.740		coord: 138..188 e-value: 1.2E-30 score: 107.0
IPR013843	Ribosomal protein S4e, N-terminal	PFAM	PF08071	RS4NT	coord: 19..55 e-value: 4.5E-19 score: 68.3
None	No IPR available	PANTHER	PTHR11581:SF33	40S RIBOSOMAL PROTEIN S4	coord: 237..280 coord: 17..236
None	No IPR available	PROSITE	PS50889	S4	coord: 58..120 score: 9.171491
IPR018199	Ribosomal protein S4e, N-terminal, conserved site	PROSITE	PS00528	RIBOSOMAL_S4E	coord: 24..38
IPR041982	Ribosomal protein S4, KOW domain	CDD	cd06087	KOW_RPS4	coord: 191..245 e-value: 4.93099E-30 score: 105.675

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018916.1	Sed0018916.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding